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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Hara, T."

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Search Summary

This query matches 32 Structures.

Refinements

Structure Determination Methodology

experimental (32)

Scientific Name of Source Organism

	Homo sapiens (17)
	Streptomyces clavuligerus (7)
	Escherichia coli B (3)
	Bos taurus (2)
	Mus musculus (2)
	Pseudomonas aeruginosa (1)
	Saccharomyces cerevisiae (1)
	Xenopus laevis (1)

Taxonomy

	Eukaryota (21)
	Bacteria (11)
	Eukaryota (eukaryotes) (1)

Experimental Method

	X-RAY DIFFRACTION (29)
	SOLUTION NMR (3)

Polymer Entity Type

Protein (32)

Refinement Resolution (Å)

	0.5 - 1.0 (6)
	1.0 - 1.5 (4)
	1.5 - 2.0 (7)
	2.0 - 2.5 (9)
	2.5 - 3.0 (2)
	3.0 - 3.5 (1)

Release Date

	1995 - 1999 (7)
	2000 - 2004 (8)
	2005 - 2009 (3)
	2010 - 2014 (1)
	2015 - 2019 (8)
	2020 - 2024 (5)

Enzyme Classification Name

	Oxidoreductases (7)
	Hydrolases (3)
	Ligases (3)

Symmetry Type

	Asymmetric (22)
	Cyclic (9)
	Dihedral (3)

SCOP Classification

	All beta proteins (18)
	Alpha and beta proteins (a+b) (5)
	All alpha proteins (3)
	Alpha and beta proteins (a/b) (3)
	Peptides (1)
	Small proteins (1)

AllSelected

1 to 25 of 32 Structures

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1DCS \| pdb_00001dcs	Download File View File

DEACETOXYCEPHALOSPORIN C SYNTHASE FROM S. CLAVULIGERUS

Valegard, K., Terwisscha Van Scheltinga, A.C., Lloyd, M.D., Hara, T., Ramaswamy, S., Perrakis, A., Thompson, A., Lee, H.J., Baldwin, J.E., Schofield, C.J., Hajdu, J., Andersson, I.

(1998) Nature 394: 805-809

Released	1999-06-08
Method	X-RAY DIFFRACTION 1.3 Å
Organisms	Streptomyces clavuligerus
Macromolecule	DEACETOXYCEPHALOSPORIN C SYNTHASE (protein)
Unique Ligands	SO4

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1DUM \| pdb_00001dum	Download File View File

NMR STRUCTURE OF [F5Y, F16W] MAGAININ 2 BOUND TO PHOSPHOLIPID VESICLES

Takeda, A., Wakamatsu, K., Tachi, T., Matsuzaki, K.

(2001) Biopolymers 58: 437-446

Released	2001-06-27
Method	SOLUTION NMR
Organisms	Xenopus laevis
Macromolecule	MAGAININ 2 (protein)

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1E5H \| pdb_00001e5h	Download File View File

DELTA-R307A DEACETOXYCEPHALOSPORIN C SYNTHASE COMPLEXED WITH SUCCINATE AND CARBON DIOXIDE

Lee, H.J., Lloyd, M.D., Harlos, K., Clifton, I.J., Baldwin, J.E., Schofield, C.J.

(2001) J Mol Biology 308: 937

Released	2001-07-26
Method	X-RAY DIFFRACTION 1.96 Å
Organisms	Streptomyces clavuligerus
Macromolecule	DEACETOXYCEPHALOSPORIN C SYNTHASE (protein)
Unique Ligands	CO2, FE2, SIN

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1E5I \| pdb_00001e5i	Download File View File

DELTA-R306 DEACETOXYCEPHALOSPORIN C SYNTHASE COMPLEXED WITH IRON AND 2-OXOGLUTARATE.

Lee, H.J., Lloyd, M.D., Harlos, K., Clifton, I.J., Baldwin, J.E., Schofield, C.J.

(2001) J Mol Biology 308: 937

Released	2001-07-26
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Streptomyces clavuligerus
Macromolecule	DEACETOXYCEPHALOSPORIN C SYNTHASE (protein)
Unique Ligands	AKG, FE2

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1FAX \| pdb_00001fax	Download File View File

COAGULATION FACTOR XA INHIBITOR COMPLEX

Brandstetter, H., Engh, R.A.

(1996) J Biological Chem 271: 29988-29992

Released	1997-10-29
Method	X-RAY DIFFRACTION 3 Å
Organisms	Homo sapiens
Macromolecule	FACTOR XA (protein)
Unique Ligands	CA, DX9

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1GSA \| pdb_00001gsa	Download File View File

STRUCTURE OF GLUTATHIONE SYNTHETASE COMPLEXED WITH ADP AND GLUTATHIONE

Hara, T., Kato, H., Nishioka, T., Katsube, Y., Oda, J.

(1996) Biochemistry 35: 11967-11974

Released	1996-06-20
Method	X-RAY DIFFRACTION 2 Å
Organisms	Escherichia coli B
Macromolecule	GLUTATHIONE SYNTHETASE (protein)
Unique Ligands	ADP, GSH, MG, SO4

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1GSH \| pdb_00001gsh	Download File View File

STRUCTURE OF ESCHERICHIA COLI GLUTATHIONE SYNTHETASE AT PH 7.5

Matsuda, K., Kato, H., Yamaguchi, H., Nishioka, T., Katsube, Y., Oda, J.

(1996) Protein Eng 9: 1083-1092

Released	1996-07-11
Method	X-RAY DIFFRACTION 2 Å
Organisms	Escherichia coli B
Macromolecule	GLUTATHIONE BIOSYNTHETIC LIGASE (protein)

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1HJF \| pdb_00001hjf	Download File View File

Alteration of the co-substrate selectivity of deacetoxycephalosporin C synthase: The role of arginine-258

Lee, H.J., Lloyd, M.D., Clifton, I.J., Harlos, K., Dubus, A., Baldwin, J.E., Frere, J.M., Schofield, C.J.

(2001) J Biological Chem 276: 18290

Released	2001-06-01
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Streptomyces clavuligerus
Macromolecule	DEACETOXYCEPHALOSPORIN C SYNTHASE (protein)
Unique Ligands	COI, FE2

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1HJG \| pdb_00001hjg	Download File View File

Alteration of the co-substrate selectivity of deacetoxycephalosporin C synthase: The role of arginine-258

Lee, H.J., Lloyd, M.D., Clifton, I.J., Harlos, K., Dubus, A., Baldwin, J.E., Frere, J.M., Schofield, C.J.

(2001) J Biological Chem 276: 18290

Released	2001-06-01
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Streptomyces clavuligerus
Macromolecule	DEACETOXYCEPHALOSPORIN C SYNTHASE (protein)
Unique Ligands	FE2, KIV

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1ITO \| pdb_00001ito	Download File View File

Crystal Structure Analysis of Bovine Spleen Cathepsin B-E64c complex

Yamamoto, A., Tomoo, T., Matsugi, K., Hara, T., In, Y., Murata, M., Kitamura, K., Ishida, T.

(2002) Biochim Biophys Acta 1597: 244-251

Released	2003-01-19
Method	X-RAY DIFFRACTION 2.286 Å
Organisms	Bos taurus
Macromolecule	Cathepsin B (protein)
Unique Ligands	E6C

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1J0S \| pdb_00001j0s	Download File View File

Solution structure of the human interleukin-18

Kato, Z., Jee, J., Shikano, H., Mishima, M., Ohki, I., Yoneda, T., Hara, T., Torigoe, K., Kondo, N., Shirakawa, M.

(2003) Nat Struct Biol 10: 966-971

Released	2003-11-11
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Interleukin-18 (protein)

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1QDQ \| pdb_00001qdq	Download File View File

X-RAY CRYSTAL STRUCTURE OF BOVINE CATHEPSIN B-CA074 COMPLEX

Yamamoto, A.

(2000) J Biochem 127: 635-643

Released	2000-07-10
Method	X-RAY DIFFRACTION 2.18 Å
Organisms	Bos taurus
Macromolecule	CATHEPSIN B (protein)
Unique Ligands	074

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1RXF \| pdb_00001rxf	Download File View File

DEACETOXYCEPHALOSPORIN C SYNTHASE COMPLEXED WITH FE(II)

Valegard, K., Terwisscha Van Scheltinga, A.C., Lloyd, M.D., Hara, T., Ramaswamy, S., Perrakis, A., Thompson, A., Lee, H.J., Baldwin, J.E., Schofield, C.J., Hajdu, J., Andersson, I.

(1998) Nature 394: 805-809

Released	1999-06-08
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Streptomyces clavuligerus
Macromolecule	DEACETOXYCEPHALOSPORIN C SYNTHASE (protein)
Unique Ligands	FE

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1RXG \| pdb_00001rxg	Download File View File

DEACETOXYCEPHALOSPORIN C SYNTHASE COMPLEXED WITH FE(II) AND 2-OXOGLUTARATE

Valegard, K., Terwisscha Van Scheltinga, A.C., Lloyd, M.D., Hara, T., Ramaswamy, S., Perrakis, A., Thompson, A., Lee, H.J., Baldwin, J.E., Shofield, C.J., Hajdu, J., Andersson, I.

(1998) Nature 394: 805-809

Released	1999-06-08
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Streptomyces clavuligerus
Macromolecule	DEACETOXYCEPHALOSPORIN C SYNTHASE (protein)
Unique Ligands	AKG, FE, SO4

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2DQT \| pdb_00002dqt	Download File View File

High resolution crystal structure of the complex of the hydrolytic antibody Fab 6D9 and a transition-state analog

Kristensen, O., Vassylyev, D.G., Tanaka, F., Ito, N., Morikawa, K., Fujii, I.

(2007) J Mol Biology 369: 198-209

Released	2006-06-20
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Mus musculus
Macromolecule	IMMUNOGLOBULIN 6D9 (protein)
Unique Ligands	CPD

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2DQU \| pdb_00002dqu	Download File View File

Crystal form II: high resolution crystal structure of the complex of the hydrolytic antibody Fab 6D9 and a transition-state analog

Kristensen, O., Vassylyev, D.G., Tanaka, F., Ito, N., Morikawa, K., Fujii, I.

(2007) J Mol Biology 369: 198-209

Released	2006-06-20
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Mus musculus
Macromolecule	IMMUNOGLOBULIN 6D9 (protein)
Unique Ligands	CPD

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2GLT \| pdb_00002glt	Download File View File

STRUCTURE OF ESCHERICHIA COLI GLUTATHIONE SYNTHETASE AT PH 6.0.

Matsuda, K., Yamaguchi, H., Kato, H., Nishioka, T., Katsube, Y., Oda, J.

(1996) Protein Eng 9: 1083-1092

Released	1995-07-31
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Escherichia coli B
Macromolecule	GLUTATHIONE BIOSYNTHETIC LIGASE (protein)

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2GS0 \| pdb_00002gs0	Download File View File

NMR structure of the complex between the PH domain of the Tfb1 subunit from TFIIH and the activation domain of p53

Di Lello, P., Jones, T.N., Nguyen, B.D., Legault, P., Omichinski, J.G.

(2006) Mol Cell 22: 731-740

Released	2006-10-31
Method	SOLUTION NMR
Organisms	Homo sapiens Saccharomyces cerevisiae
Macromolecule	Cellular tumor antigen p53 (protein) RNA polymerase II transcription factor B subunit 1 (protein)

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3WBG \| pdb_00003wbg	Download File View File

Structure of the human heart fatty acid-binding protein in complex with 1-anilinonaphtalene-8-sulphonic acid

Hirose, M., Sugiyama, S., Ishida, H., Niiyama, M., Matsuoka, D., Hara, T., Sato, F., Mizohata, E., Murakami, S., Inoue, T., Matsuoka, S., Murata, M.

(2013) J Synchrotron Radiat 20: 923-928

Released	2013-10-30
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Homo sapiens
Macromolecule	Fatty acid-binding protein, heart (protein)
Unique Ligands	2AN

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3WVM \| pdb_00003wvm	Download File View File

The 0.88 angstrom X-ray structure of the human heart fatty acid-binding protein complexed with stearic acid

Sugiyama, S., Matsuoka, S., Mizohata, E., Matsuoka, D., Ishida, H., Hirose, M., Kakinouchi, K., Hara, T., Matsumura, H., Murakami, S., Inoue, T., Murata, M.

(2015) Angew Chem Int Ed Engl 54: 1508-1511

Released	2015-01-28
Method	X-RAY DIFFRACTION 0.88 Å
Organisms	Homo sapiens
Macromolecule	Fatty acid-binding protein, heart (protein)
Unique Ligands	P6G, STE

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4TJZ \| pdb_00004tjz	Download File View File

The 0.87 angstrom X-ray structure of the human heart fatty acid-binding protein complexed with capric acid

Sugiyama, S., Matsuoka, S., Mizohata, E., Ishida, H., Hirose, M., Kakinouchi, K., Hara, T., Murakami, S., Inoue, T., Murata, M.

(2015) Angew Chem Int Ed Engl 54: 1508-1511

Released	2015-01-28
Method	X-RAY DIFFRACTION 0.87 Å
Organisms	Homo sapiens
Macromolecule	Fatty acid-binding protein, heart (protein)
Unique Ligands	DKA, P6G

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4TKB \| pdb_00004tkb	Download File View File

The 0.86 angstrom X-ray structure of the human heart fatty acid-binding protein complexed with lauric acid

Sugiyama, S., Matsuoka, S., Mizohata, E., Matsuoka, D., Ishida, H., Hirose, M., Kakinouchi, K., Hara, T., Murakami, S., Inoue, T., Murata, M.

(2015) Angew Chem Int Ed Engl 54: 1508-1511

Released	2015-01-28
Method	X-RAY DIFFRACTION 0.86 Å
Organisms	Homo sapiens
Macromolecule	Fatty acid-binding protein, heart (protein)
Unique Ligands	DAO, P6G

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4TKH \| pdb_00004tkh	Download File View File

The 0.93 angstrom X-ray structure of the human heart fatty acid-binding protein complexed with myristic acid

Sugiyama, S., Matsuoka, S., Mizohata, E., Matsuoka, D., Ishida, H., Hirose, M., Kakinouchi, K., Hara, T., Murakami, S., Inoue, T., Murata, M.

(2015) Angew Chem Int Ed Engl 54: 1508-1511

Released	2015-01-28
Method	X-RAY DIFFRACTION 0.93 Å
Organisms	Homo sapiens
Macromolecule	Fatty acid-binding protein, heart (protein)
Unique Ligands	MYR, P6G

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4TKJ \| pdb_00004tkj	Download File View File

The 0.87 angstrom X-ray structure of the human heart fatty acid-binding protein complexed with palmitic acid

Sugiyama, S., Matsuoka, S., Mizohata, E., Matsuoka, D., Ishida, H., Hirose, M., Kakinouchi, K., Hara, T., Murakami, S., Inoue, T., Murata, M.

(2015) Angew Chem Int Ed Engl 54: 1508-1511

Released	2015-01-28
Method	X-RAY DIFFRACTION 0.87 Å
Organisms	Homo sapiens
Macromolecule	Fatty acid-binding protein, heart (protein)
Unique Ligands	GLP, P6G, PLM