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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Spitzfaden, C."

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Search Summary

This query matches 45 Structures.

Refinements

Structure Determination Methodology

experimental (45)

Scientific Name of Source Organism

	Homo sapiens (16)
	Severe acute respiratory syndrome coronavirus 2 (14)
	Macaca mulatta (13)
	Human herpesvirus 4 strain B95-8 (4)
	Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044 (4)
	Macaca fascicularis (4)
	Zika virus ZIKV/H. sapiens/FrenchPolynesia/10087PF/2013 (4)
	Brevibacillus brevis (2)
	Mus musculus (2)
	human gammaherpesvirus 4 (2)

More...

Taxonomy

	Eukaryota (36)
	Riboviria (18)
	Bacteria (8)
	Duplodnaviria (6)

Experimental Method

	X-RAY DIFFRACTION (43)
	ELECTRON MICROSCOPY (2)

Polymer Entity Type

Protein (45)

Refinement Resolution (Å)

	1.0 - 1.5 (1)
	1.5 - 2.0 (10)
	2.0 - 2.5 (11)
	2.5 - 3.0 (10)
	3.0 - 3.5 (6)
	3.5 - 4.0 (5)
	4.0 - 4.5 (2)

Release Date

	2010 - 2014 (5)
	2015 - 2019 (3)
	2020 - 2024 (37)

Enzyme Classification Name

	Oxidoreductases (5)
	Isomerases (2)

Symmetry Type

	Asymmetric (39)
	Cyclic (6)

SCOP Classification

All beta proteins (2)

AllSelected

1 to 25 of 45 Structures

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3PHL \| pdb_00003phl	Download File View File

The apo-form UDP-glucose 6-dehydrogenase

Chen, Y.Y., Ko, T.P., Lin, C.H., Chen, W.H., Wang, A.H.J.

(2011) J Struct Biol 175: 300-310

Released	2011-09-28
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044
Macromolecule	UDP-glucose 6-dehydrogenase (protein)

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3PID \| pdb_00003pid	Download File View File

The apo-form UDP-glucose 6-dehydrogenase with a C-terminal six-histidine tag

Chen, Y.-Y., Ko, T.-P., Lin, C.-H., Chen, W.-H., Wang, A.H.-J.

(2011) J Struct Biol 175: 300-310

Released	2011-09-28
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044
Macromolecule	UDP-glucose 6-dehydrogenase (protein)

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3PJG \| pdb_00003pjg	Download File View File

Crystal structure of UDP-glucose dehydrogenase from Klebsiella pneumoniae complexed with product UDP-glucuronic acid

Chen, Y.-Y., Ko, T.-P., Lin, C.-H., Chen, W.-H., Wang, A.H.-J.

(2011) J Struct Biol 175: 300-310

Released	2011-09-28
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Klebsiella pneumoniae
Macromolecule	UDP-glucose 6-dehydrogenase (protein)
Unique Ligands	CXS, UGA

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3PLN \| pdb_00003pln	Download File View File

Crystal structure of Klebsiella pneumoniae UDP-glucose 6-dehydrogenase complexed with UDP-glucose

Chen, Y.-Y., Ko, T.-P., Lin, C.-H., Chen, W.-H., Wang, A.H.-J.

(2011) J Struct Biol 175: 300-310

Released	2011-09-28
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044
Macromolecule	UDP-glucose 6-dehydrogenase (protein)
Unique Ligands	U5P

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3PLR \| pdb_00003plr	Download File View File

Crystal structure of Klebsiella pneumoniae UDP-glucose 6-dehydrogenase complexed with NADH and UDP-glucose

Chen, Y.-Y., Ko, T.-P., Lin, C.-H., Chen, W.-H., Wang, A.H.-J.

(2011) J Struct Biol 175: 300-310

Released	2011-09-28
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044
Macromolecule	UDP-glucose 6-dehydrogenase (protein)
Unique Ligands	NAI, U5P

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4YHB \| pdb_00004yhb	Download File View File

Crystal structure of a siderophore utilization protein from T. fusca

Li, K., Bruner, S.D.

(2015) Biochemistry 54: 3989-4000

Released	2015-07-15
Method	X-RAY DIFFRACTION 1.8892 Å
Organisms	Thermobifida fusca TM51
Macromolecule	Iron-chelator utilization protein (protein)
Unique Ligands	FAD, MPD, ZN

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5ISW \| pdb_00005isw	Download File View File

Structure of the apo PCP-E didomain of the gramicidin S synthetase A

Chen, W.-H., Li, K., Bruner, S.D.

(2016) ACS Chem Biol 11: 2293-2303

Released	2016-06-29
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Brevibacillus brevis
Macromolecule	Gramicidin S synthase 1 (protein)
Unique Ligands	GOL

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5ISX \| pdb_00005isx	Download File View File

Structure of the holo PCP-E didomain of the gramicidin S synthetase A

Chen, W.-H., Li, K., Bruner, S.D.

(2016) ACS Chem Biol 11: 2293-2303

Released	2016-06-29
Method	X-RAY DIFFRACTION 2.335 Å
Organisms	Brevibacillus brevis
Macromolecule	Gramicidin S synthase 1 (protein)
Unique Ligands	GOL, PNS

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6U6M \| pdb_00006u6m	Download File View File

Crystal structure of a vaccine-elicited anti-HIV-1 rhesus macaque antibody DH840.1

Chen, W.-H., Choe, M., Saunders, K.O., Joyce, M.G.

(2021) PLoS Pathog 17: e1009624-e1009624

Released	2021-03-24
Method	X-RAY DIFFRACTION 2.683 Å
Organisms	Macaca mulatta
Macromolecule	DH840.1 Fab heavy chain (protein) DH840.1 Fab light chain (protein)

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6U6O \| pdb_00006u6o	Download File View File

Crystal structure of a vaccine-elicited anti-HIV-1 rhesus macaque antibody DH846

Chen, W.-H., Choe, M., Saunders, K.O., Joyce, M.G.

(2021) PLoS Pathog 17: e1009624-e1009624

Released	2021-03-24
Method	X-RAY DIFFRACTION 2.806 Å
Organisms	Macaca mulatta
Macromolecule	DH846 Fab heavy chain (protein) DH846 Fab light chain (protein)

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6W7Y \| pdb_00006w7y	Download File View File

Crystal structure of SARS-CoV and SARS-CoV-2 reactive human antibody CR3022

Chen, W.H., Joyce, M.G.

To be published

Released	2020-05-06
Method	X-RAY DIFFRACTION 3.3 Å
Organisms	Homo sapiens
Macromolecule	CR3022 Heavy chain (protein) CR3022 Light chain (protein)

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7N4I \| pdb_00007n4i	Download File View File

Crystal structure of SARS-CoV-2 receptor binding domain in complex with neutralizing human antibody WRAIR-2057.

Sankhala, R.S., Joyce, M.G.

(2021) Nat Immunol 22: 1503-1514

Released	2021-10-06
Method	X-RAY DIFFRACTION 2.284 Å
Organisms	Homo sapiens Severe acute respiratory syndrome coronavirus 2
Macromolecule	Spike protein S1 (protein) WRAIR-2057 Antibody Fab Heavy Chain (protein) WRAIR-2057 Antibody Fab Light Chain (protein)
Unique Ligands	GOL
Unique branched monosaccharides	BMA, NAG

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7N4J \| pdb_00007n4j	Download File View File

Crystal structure of SARS-CoV-2 receptor binding domain in complex with neutralizing human antibody WRAIR-2173.

Sankhala, R.S., Joyce, M.G.

(2021) Nat Immunol 22: 1503-1514

Released	2021-10-06
Method	X-RAY DIFFRACTION 2.207 Å
Organisms	Homo sapiens Severe acute respiratory syndrome coronavirus 2
Macromolecule	Spike protein S1 (protein) WRAIR-2173 antibody Fab heavy chain (protein) WRAIR-2173 antibody Fab light chain (protein)
Unique branched monosaccharides	BMA, NAG

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7N4L \| pdb_00007n4l	Download File View File

Crystal structure of SARS-CoV-2 receptor binding domain in complex with neutralizing human antibody WRAIR-2125.

Sankhala, R.S., Joyce, M.G.

(2021) Nat Immunol 22: 1503-1514

Released	2021-11-10
Method	X-RAY DIFFRACTION 3.601 Å
Organisms	Homo sapiens Severe acute respiratory syndrome coronavirus 2
Macromolecule	Spike protein S1 (protein) WRAIR-2125 antibody Fab heavy chain (protein) WRAIR-2125 antibody Fab light chain (protein)

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7N4M \| pdb_00007n4m	Download File View File

Crystal structure of SARS-CoV-2 receptor binding domain in complex with neutralizing human antibody WRAIR-2151.

Sankhala, R.S., Joyce, M.G.

(2021) Nat Immunol 22: 1503-1514

Released	2021-11-10
Method	X-RAY DIFFRACTION 3.79 Å
Organisms	Homo sapiens Severe acute respiratory syndrome coronavirus 2
Macromolecule	Spike protein S1 (protein) WRAIR-2151 antibody Fab heavy chain (protein) WRAIR-2151 antibody Fab light chain (protein)
Unique branched monosaccharides	NAG

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7S07 \| pdb_00007s07	Download File View File

Crystal structure of Epstein-Barr virus glycoprotein gH/gL/gp42-peptide in complex with human neutralizing antibodies 769B10 and 769C2

Chen, W.-H., Kanekiyo, M., Cohen, J.I., Joyce, M.G.

(2022) Immunity 55: 2135-2148.e6

Released	2022-11-09
Method	X-RAY DIFFRACTION 3.29 Å
Organisms	Homo sapiens human gammaherpesvirus 4
Macromolecule	Unique protein chains: 7
Unique Ligands	NAG

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7S08 \| pdb_00007s08	Download File View File

Crystal structure of Epstein-Barr virus gH/gL targeting antibody 770F7

Chen, W.-H., Joyce, M.G.

(2022) Immunity 55: 2135-2148.e6

Released	2022-11-09
Method	X-RAY DIFFRACTION 2.42 Å
Organisms	Homo sapiens
Macromolecule	770F7 Fab Heavy chain (protein) 770F7 Fab Light chain (protein)
Unique Ligands	GOL

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7S0J \| pdb_00007s0j	Download File View File

Crystal structure of Epstein-Barr virus gH/gL targeting antibody 769B10

Chen, W.-H., Kanekiyo, M., Cohen, J.I., Joyce, M.G.

(2022) Immunity 55: 2135-2148.e6

Released	2022-11-09
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Homo sapiens
Macromolecule	769B10 Fab Heavy chain (protein) 769B10 Fab Light chain (protein)
Unique Ligands	GOL

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7S1B \| pdb_00007s1b	Download File View File

Crystal structure of Epstein-Barr virus glycoproteins gH/gL/gp42-peptide in complex with human neutralizing antibodies 769C2 and 770F7

Chen, W.-H., Cohen, J.I., Kanekiyo, M., Joyce, M.G.

(2022) Immunity 55: 2135-2148.e6

Released	2022-11-09
Method	X-RAY DIFFRACTION 3.03 Å
Organisms	Homo sapiens human gammaherpesvirus 4
Macromolecule	Unique protein chains: 7
Unique Ligands	NAG

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7S83 \| pdb_00007s83	Download File View File

Crystal structure of SARS CoV-2 Spike Receptor Binding Domain in complex with shark neutralizing VNARs ShAb01 and ShAb02

Chen, W.-H., Hajduczki, A., Dooley, H.M., Joyce, M.G.

(2023) Nat Commun 14: 580-580

Released	2022-11-23
Method	X-RAY DIFFRACTION 2.52 Å
Organisms	Ginglymostoma cirratum Severe acute respiratory syndrome coronavirus 2
Macromolecule	ShAb01 VNAR (protein) ShAb02 VNAR (protein) Spike protein S1 (protein)
Unique Ligands	GOL
Unique branched monosaccharides	NAG

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7U8E \| pdb_00007u8e	Download File View File

Crystal structure of antibody Ab246 in complex with SARS-CoV-2 receptor binding domain

Sankhala, R.S., Joyce, M.G.

(2024) Structure 32: 131-147.e7

Released	2023-03-15
Method	X-RAY DIFFRACTION 2.29 Å
Organisms	Homo sapiens Severe acute respiratory syndrome coronavirus 2
Macromolecule	Antibody Ab246 Fab heavy chain (protein) Antibody Ab246 Fab light chain (protein) Spike protein S1 (protein)
Unique Ligands	CL, GOL, NAG

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8EE5 \| pdb_00008ee5	Download File View File

Crystal structure of a NHP anti-ZIKV neutralizing antibody rhMZ119-D in complex with ZIKV E glycoprotein

Sankhala, R.S., Joyce, M.G.

(2023) Cell Rep 42: 112942-112942

Released	2023-08-30
Method	X-RAY DIFFRACTION 3.583 Å
Organisms	Macaca mulatta Zika virus ZIKV/H. sapiens/FrenchPolynesia/10087PF/2013
Macromolecule	Envelope protein E (protein) rhMZ119-D antibody heavy chain (protein) rhMZ119-D antibody light chain (protein)
Unique branched monosaccharides	NAG

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8EE8 \| pdb_00008ee8	Download File View File

Crystal structure of a NHP anti-ZIKV neutralizing antibody rhMZ100-C in complex with ZIKV E glycoprotein

Sankhala, R.S., Joyce, M.G.

(2023) Cell Rep 42: 112942-112942

Released	2023-08-30
Method	X-RAY DIFFRACTION 2.803 Å
Organisms	Macaca mulatta Zika virus ZIKV/H. sapiens/FrenchPolynesia/10087PF/2013
Macromolecule	Envelope protein E (protein) rhMZ100-C antibody heavy chain (protein) rhMZ100-C antibody light chain (protein)

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8EED \| pdb_00008eed	Download File View File

Crystal structure of a NHP anti-ZIKV neutralizing antibody rhMZ107-B in complex with ZIKV E glycoprotein

Sankhala, R.S., Joyce, M.G.

(2023) Cell Rep 42: 112942-112942

Released	2023-08-30
Method	X-RAY DIFFRACTION 3.487 Å
Organisms	Macaca mulatta Zika virus ZIKV/H. sapiens/FrenchPolynesia/10087PF/2013
Macromolecule	Envelope protein E (protein) rhMZ107-B antibody heavy chain (protein) rhMZ107-B antibody light chain (protein)

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8EEE \| pdb_00008eee	Download File View File

Crystal structure of a NHP anti-ZIKV neutralizing antibody rhMZ104-d in complex with ZIKV E glycoprotein

Sankhala, R.S., Joyce, M.G.

(2023) Cell Rep 42: 112942-112942

Released	2023-08-30
Method	X-RAY DIFFRACTION 2.819 Å
Organisms	Macaca mulatta Zika virus ZIKV/H. sapiens/FrenchPolynesia/10087PF/2013
Macromolecule	Envelope protein E (protein) rhMZ104-D antibody heavy chain (protein) rhMZ104-D antibody light chain (protein)
Unique Ligands	SO4

1 to 25 of 45 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

3PHL | pdb_00003phl

3PID | pdb_00003pid

3PJG | pdb_00003pjg

3PLN | pdb_00003pln

3PLR | pdb_00003plr

4YHB | pdb_00004yhb

5ISW | pdb_00005isw

5ISX | pdb_00005isx

6U6M | pdb_00006u6m

6U6O | pdb_00006u6o

6W7Y | pdb_00006w7y

7N4I | pdb_00007n4i

7N4J | pdb_00007n4j

7N4L | pdb_00007n4l

7N4M | pdb_00007n4m

7S07 | pdb_00007s07

7S08 | pdb_00007s08

7S0J | pdb_00007s0j

7S1B | pdb_00007s1b

7S83 | pdb_00007s83

7U8E | pdb_00007u8e

8EE5 | pdb_00008ee5

8EE8 | pdb_00008ee8

8EED | pdb_00008eed

8EEE | pdb_00008eee