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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Prangishvili, D."

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Search Summary

This query matches 26 Structures.

Refinements

Structure Determination Methodology

experimental (26)

Scientific Name of Source Organism

	Captovirus AFV1 (11)
	Sulfolobus acidocaldarius DSM 639 (3)
	Acidianus filamentous virus 1 (isolate Yellowstone) (1)
	Betalipothrixvirus pozzuoliense (1)
	Bicaudavirus pozzuoliense (1)
	Pyrobaculum arsenaticum (1)
	Pyrobaculum filamentous virus 1 (1)
	Saccharolobus islandicus LAL14/1 (1)
	Saccharolobus solfataricus (1)
	Saccharolobus solfataricus P2 (1)

More...

Taxonomy

	Adnaviria (19)
	Archaea (6)
	Viruses incertae sedis (2)

Experimental Method

	ELECTRON MICROSCOPY (13)
	X-RAY DIFFRACTION (11)
	SOLUTION NMR (2)

Polymer Entity Type

	Protein (26)
	DNA (6)

Refinement Resolution (Å)

	1.0 - 1.5 (2)
	1.5 - 2.0 (1)
	2.0 - 2.5 (3)
	2.5 - 3.0 (5)
	3.0 - 3.5 (6)
	3.5 - 4.0 (4)
	4.0 - 4.5 (2)
	> 4.5 (1)

Release Date

	2005 - 2009 (7)
	2010 - 2014 (6)
	2015 - 2019 (5)
	2020 - 2024 (8)

Enzyme Classification Name

Transferases (3)

Membrane Protein Annotation

OPM (3)

Symmetry Type

	Asymmetric (11)
	Helical (9)
	Cyclic (5)
	Dihedral (1)
	Icosahedral (1)

SCOP Classification

Alpha and beta proteins (a+b) (2)

AllSelected

1 to 25 of 26 Structures

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2J6B \| pdb_00002j6b	Download File View File

crystal structure of AFV3-109, a highly conserved protein from crenarchaeal viruses

Keller, J., Leulliot, N., Cambillau, C., Campanacci, V., Porciero, S., Prangishvili, D., Cortez, D., Quevillon-Cheruel, S., Van Tilbeurgh, H.

(2007) Virol J 4: 12

Released	2007-02-20
Method	X-RAY DIFFRACTION 1.3 Å
Organisms	Captovirus AFV1
Macromolecule	AFV3-109 (protein)

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2J6C \| pdb_00002j6c	Download File View File

crystal structure of AFV3-109, a highly conserved protein from crenarchaeal viruses

Keller, J., Leulliot, N., Cambillau, C., Campanacci, V., Porciero, S., Prangishvili, D., Cortez, D., Quevillon-Cheruel, S., Van Tilbeurgh, H.

(2007) Virol J 4: 12

Released	2007-02-20
Method	X-RAY DIFFRACTION 1.3 Å
Organisms	Captovirus AFV1
Macromolecule	AFV3-109 (protein)
Unique Ligands	GOL

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2KEL \| pdb_00002kel	Download File View File

Structure of the transcription regulator SvtR from the hyperthermophilic archaeal virus SIRV1

Guilliere, F., Kessler, A., Peixeiro, N., Sezonov, G., Prangishvili, D., Delepierre, M., Guijarro, J.I.

(2009) J Biological Chem 284: 22222-22237

Released	2009-06-16
Method	SOLUTION NMR
Organisms	Sulfolobus islandicus rod-shaped virus 1
Macromolecule	Uncharacterized protein 56B (protein)

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2LVH \| pdb_00002lvh	Download File View File

Solution structure of the zinc finger AFV1p06 protein from the hyperthermophilic archaeal virus AFV1

Guilliere, F., Sezonov, G., Prangishvili, D., Delepierre, M., Guijarro, J.

(2013) PLoS One 8: e52908-e52908

Released	2013-01-30
Method	SOLUTION NMR
Organisms	Acidianus filamentous virus 1 (isolate Yellowstone)
Macromolecule	Putative zinc finger protein ORF59a (protein)
Unique Ligands	ZN

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3DF6 \| pdb_00003df6	Download File View File

The thermo- and acido-stable ORF-99 from the archaeal virus AFV1

Goulet, A., Spinelli, S., Prangishvili, D., van Tilbeurgh, H., Cambillau, C., Campanacci, V.

(2009) Protein Sci 18: 1316-1320

Released	2009-06-16
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Captovirus AFV1
Macromolecule	ORF99 (protein)
Unique Ligands	CA

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3DJW \| pdb_00003djw	Download File View File

The thermo- and acido-stable ORF-99 from the archaeal virus AFV1

Goulet, A., Spinelli, S., Prangishvili, D., van Tilbeurgh, H., Cambillau, C., Campanacci, V.

(2009) Protein Sci 18: 1316-1320

Released	2009-06-16
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Captovirus AFV1
Macromolecule	ORF99 (protein)

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3FBL \| pdb_00003fbl	Download File View File

Crystal structure of ORF132 of the archaeal virus Acidianus Filamentous Virus 1 (AFV1)

Goulet, A., Leulliot, N., Prangishvili, D., van Tilbeurgh, H., Campanacci, V., Cambillau, C.

(2009) Proc Natl Acad Sci U S A 106: 21155-21160

Released	2009-11-10
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Captovirus AFV1
Macromolecule	Putative uncharacterized protein (protein)
Unique Ligands	CL

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3FBZ \| pdb_00003fbz	Download File View File

Crystal structure of ORF140 of the archaeal virus Acidianus Filamentous Virus 1 (AFV1)

Goulet, A., Prangishvili, D., van Tilbeurgh, H., Campanacci, V., Cambillau, C.

(2009) Proc Natl Acad Sci U S A 106: 21155-21160

Released	2009-11-10
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Captovirus AFV1
Macromolecule	Putative uncharacterized protein (protein)
Unique Ligands	BOG, CL

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3II2 \| pdb_00003ii2	Download File View File

Structure of ORF157 from Acidianus Filamentous Virus 1

Goulet, A., Porciero, S., Prangishvili, D., van Tilbeurgh, H., Cambillau, C., Campanacci, V.

(2010) J Virol 84: 5025-5031

Released	2010-03-23
Method	X-RAY DIFFRACTION 2 Å
Organisms	Captovirus AFV1
Macromolecule	Putative uncharacterized protein (protein)
Unique Ligands	CL, GOL, HG, NI

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3II3 \| pdb_00003ii3	Download File View File

Structure of ORF157 from Acidianus filamentous Virus 1

Goulet, A., Redder, P., Pina, M., Prangishvili, D., van Tilbeurgh, H., Cambillau, C., Campanacci, V.

(2010) J Virol 84: 5025-5031

Released	2010-03-23
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Captovirus AFV1
Macromolecule	Putative uncharacterized protein (protein)
Unique Ligands	GOL, NI

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3ILD \| pdb_00003ild	Download File View File

Structure of ORF157-K57A from Acidianus filamentous virus 1

Goulet, A., Lichiere, J., Prangishvili, D., van Tilbeurgh, H., Cambillau, C., Campanacci, V.

(2010) J Virol 84: 5025-5031

Released	2010-03-23
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Captovirus AFV1
Macromolecule	Putative uncharacterized protein (protein)
Unique Ligands	MG

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3ILE \| pdb_00003ile	Download File View File

Crystal structure of ORF157-E86A of Acidianus filamentous virus 1

Goulet, A., Lichiere, J., Prangishvili, D., van Tilbeurgh, H., Cambillau, C., Campanacci, V.

(2010) J Virol 84: 5025-5031

Released	2010-03-23
Method	X-RAY DIFFRACTION 3.3 Å
Organisms	Captovirus AFV1
Macromolecule	Putative uncharacterized protein (protein)
Unique Ligands	NI

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3J9X \| pdb_00003j9x	Download File View File

A Virus that Infects a Hyperthermophile Encapsidates A-Form DNA

DiMaio, F., Yu, X., Rensen, E., Krupovic, M., Prangishvili, D., Egelman, E.

(2015) Science 348: 914-917

Released	2015-06-03
Method	ELECTRON MICROSCOPY 3.8 Å
Organisms	Sulfolobus islandicus rod-shaped virus 2
Macromolecule	coat protein (protein) DNA (nucleic acid)

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4HV0 \| pdb_00004hv0	Download File View File

Structure and Function of AvtR, a Novel Transcriptional Regulator from a Hyperthermophilic Archaeal Lipothrixvirus

Peixeiro, N., Keller, J., Collinet, B., Leulliot, N., Campanacci, V., Cortez, D., Cambillau, C., Nitta, K.R., Vincentelli, R., Forterre, P., Prangishvili, D., Sezonov, G., van Tilbeurgh, H.

(2013) J Virol 87: 124-136

Released	2012-11-21
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Betalipothrixvirus pozzuoliense
Macromolecule	AvtR (protein)

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5W7G \| pdb_00005w7g	Download File View File

An envelope of a filamentous hyperthermophilic virus carries lipids in a horseshoe conformation

Kasson, P., DiMaio, F., Yu, X., Lucas-Staat, S., Krupovic, M., Schouten, S., Prangishvili, D., Egelman, E.

(2017) Elife 6:

Released	2017-07-19
Method	ELECTRON MICROSCOPY 4.5 Å
Organisms	Captovirus AFV1
Macromolecule	ORF132 (protein) ORF140 (protein) DNA (253-MER) (nucleic acid)

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6D5F \| pdb_00006d5f	Download File View File

Cryo-EM reconstruction of membrane-enveloped filamentous virus SFV1 (Sulfolobus filamentous virus 1)

Wang, F., Osinski, T., Liu, Y., Krupovic, M., Prangishvili, D., Egelman, E.H.

(2018) Nat Commun 9: 3360-3360

Released	2018-08-29
Method	ELECTRON MICROSCOPY 3.7 Å
Organisms	Sulfolobus filamentous virus 1
Macromolecule	Fimbrial protein (protein) DNA (336-MER) (nucleic acid)

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6NAV \| pdb_00006nav	Download File View File

Cryo-EM reconstruction of Sulfolobus islandicus LAL14/1 Pilus

Wang, F., Cvirkaite-Krupovic, V., Prangishvili, D., Krupovic, M., Egelman, E.H.

(2019) Nat Microbiol 4: 1401-1410

Released	2019-05-08
Method	ELECTRON MICROSCOPY 4.1 Å
Organisms	Saccharolobus islandicus LAL14/1
Macromolecule	M9UD72 (protein)

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6OJ0 \| pdb_00006oj0	Download File View File

Cryo-EM reconstruction of Sulfolobus polyhedral virus 1 (SPV1)

Wang, F., Liu, Y., Conway, J.F., Krupovic, M., Prangishvili, D., Egelman, E.H.

(2019) Proc Natl Acad Sci U S A 116: 22591-22597

Released	2019-10-02
Method	ELECTRON MICROSCOPY 3.7 Å
Organisms	Sulfolobus polyhedral virus 1
Macromolecule	Structural protein VP4 (protein) Uncharacterized protein (protein)

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6V7B \| pdb_00006v7b	Download File View File

Cryo-EM reconstruction of Pyrobaculum filamentous virus 2 (PFV2)

Wang, F., Baquero, D.P., Su, Z., Prangishvili, D., Krupovic, M., Egelman, E.H.

(2020) Virus Evol 6: veaa023-veaa023

Released	2020-04-01
Method	ELECTRON MICROSCOPY 3.4 Å
Organisms	Pyrobaculum filamentous virus 1
Macromolecule	Structural protein VP1 (protein) Structural protein VP2 (protein) A-DNA (nucleic acid)

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6W8U \| pdb_00006w8u	Download File View File

Cryo-EM of the Pyrobaculum arsenaticum pilus

Wang, F., Baquero, D.P., Su, Z., Beltran, L.C., Prangishvili, D., Krupovic, M., Egelman, E.H.

(2020) Nat Commun 11: 3424-3424

Released	2020-07-08
Method	ELECTRON MICROSCOPY 3.8 Å
Organisms	Pyrobaculum arsenaticum
Macromolecule	pilin (protein)

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6W8X \| pdb_00006w8x	Download File View File

Cryo-EM of the S. solfataricus pilus

Wang, F., Baquero, D.P., Su, Z., Beltran, L.C., Prangishvili, D., Krupovic, M., Egelman, E.H.

(2020) Nat Commun 11: 3424-3424

Released	2020-07-08
Method	ELECTRON MICROSCOPY 3.4 Å
Organisms	Saccharolobus solfataricus
Macromolecule	pilin (protein)

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6WQ0 \| pdb_00006wq0	Download File View File

Cryo-EM of the S. solfataricus rod-shaped virus, SSRV1

Wang, F., Baquero, D.P., Beltran, L.C., Prangishvili, D., Krupovic, M., Egelman, E.H.

(2020) Proc Natl Acad Sci U S A 117: 19643-19652

Released	2020-07-29
Method	ELECTRON MICROSCOPY 2.8 Å
Organisms	unclassified Rudivirus
Macromolecule	Structural protein (protein) DNA (301-MER) (nucleic acid)

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6WQ2 \| pdb_00006wq2	Download File View File

Cryo-EM of the S. islandicus filamentous virus, SIFV

Wang, F., Baquero, D.P., Su, Z., Zheng, W., Prangishvili, D., Krupovic, M., Egelman, E.H.

(2020) Proc Natl Acad Sci U S A 117: 19643-19652

Released	2020-07-29
Method	ELECTRON MICROSCOPY 4 Å
Organisms	Sulfolobus islandicus filamentous virus
Macromolecule	Structural protein MCP1 (protein) Structural protein MCP2 (protein) A-DNA (nucleic acid)

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7OK0 \| pdb_00007ok0	Download File View File

Cryo-EM structure of the Sulfolobus acidocaldarius RNA polymerase at 2.88 A

Pilotto, S., Fouqueau, T., Lukoyanova, N., Sheppard, C., Lucas-Staat, S., Diaz-Santin, L.M., Matelska, D., Prangishvili, D., Cheung, A.C.M., Werner, F.

(2021) Nat Commun 12: 5523-5523

Released	2021-08-25
Method	ELECTRON MICROSCOPY 2.9 Å
Organisms	Sulfolobus acidocaldarius DSM 639
Macromolecule	Unique protein chains: 13
Unique Ligands	F3S, MG, ZN

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7OQ4 \| pdb_00007oq4	Download File View File

Cryo-EM structure of the ATV RNAP Inhibitory Protein (RIP) bound to the DNA-binding channel of the host's RNA polymerase

Pilotto, S., Fouqueau, T., Lukoyanova, N., Sheppard, C., Lucas-Staat, S., Diaz-Santin, L.M., Matelska, D., Prangishvili, D., Cheung, A.C.M., Werner, F.

(2021) Nat Commun 12: 5523-5523

Released	2021-08-25
Method	ELECTRON MICROSCOPY 3.27 Å
Organisms	Bicaudavirus pozzuoliense Sulfolobus acidocaldarius DSM 639
Macromolecule	Unique protein chains: 14
Unique Ligands	F3S, MG, ZN

1 to 25 of 26 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

2J6B | pdb_00002j6b

2J6C | pdb_00002j6c

2KEL | pdb_00002kel

2LVH | pdb_00002lvh

3DF6 | pdb_00003df6

3DJW | pdb_00003djw

3FBL | pdb_00003fbl

3FBZ | pdb_00003fbz

3II2 | pdb_00003ii2

3II3 | pdb_00003ii3

3ILD | pdb_00003ild

3ILE | pdb_00003ile

3J9X | pdb_00003j9x

4HV0 | pdb_00004hv0

5W7G | pdb_00005w7g

6D5F | pdb_00006d5f

6NAV | pdb_00006nav

6OJ0 | pdb_00006oj0

6V7B | pdb_00006v7b

6W8U | pdb_00006w8u

6W8X | pdb_00006w8x

6WQ0 | pdb_00006wq0

6WQ2 | pdb_00006wq2

7OK0 | pdb_00007ok0

7OQ4 | pdb_00007oq4