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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Lee, K.K."

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Search Summary

This query matches 9 Structures.

Refinements

Structure Determination Methodology

experimental (9)

Scientific Name of Source Organism

	Human immunodeficiency virus 1 (3)
	Byrnievirus HK97 (2)
	Clostridium botulinum (2)
	Homo sapiens (2)
	Aquifex aeolicus (1)
	Chikungunya virus strain S27-African prototype (1)

Taxonomy

	Riboviria (4)
	Bacteria (3)
	Duplodnaviria (2)
	Eukaryota (2)

Experimental Method

	ELECTRON MICROSCOPY (6)
	X-RAY DIFFRACTION (3)

Polymer Entity Type

Protein (9)

Refinement Resolution (Å)

	1.5 - 2.0 (1)
	2.0 - 2.5 (1)
	2.5 - 3.0 (1)
	4.0 - 4.5 (1)
	> 4.5 (5)

Release Date

	2005 - 2009 (1)
	2010 - 2014 (3)
	2015 - 2019 (1)
	2020 - 2024 (4)

Enzyme Classification Name

	Hydrolases (2)
	Transferases (1)

Symmetry Type

	Cyclic (4)
	Icosahedral (3)
	Asymmetric (2)

SCOP Classification

	All beta proteins (2)
	Artifacts (2)

AllSelected

1 to 9 of 9 Structures

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3DDX \| pdb_00003ddx	Download File View File

HK97 bacteriophage capsid Expansion Intermediate-II model

Lee, K.K., Gan, L., Conway, J.F., Hendrix, R.W., Steven, A.C., Johnson, J.E.

(2008) Structure 16: 1491-1502

Released	2008-11-04
Method	ELECTRON MICROSCOPY 14 Å
Organisms	Byrnievirus HK97
Macromolecule	Major capsid protein (protein)

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3OBR \| pdb_00003obr	Download File View File

Crystal structure of Botulinum neurotoxin serotype D binding domain

Zong, Y., Lee, K.K., Jin, R.

(2010) Biochem J 431: 207-216

Released	2010-09-08
Method	X-RAY DIFFRACTION 1.72 Å
Organisms	Clostridium botulinum
Macromolecule	Botulinum neurotoxin type D (protein)
Unique Ligands	GOL

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3OBT \| pdb_00003obt	Download File View File

Crystal structure of Botulinum neurotoxin serotype D ligand binding domain in complex with N-Acetylneuraminic acid

Lee, K.K., Zong, Y., Jin, R.

(2010) Biochem J 431: 207-216

Released	2010-09-08
Method	X-RAY DIFFRACTION 2 Å
Organisms	Clostridium botulinum
Macromolecule	Botulinum neurotoxin type D (protein)
Unique Ligands	GOL, SLB

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3QPR \| pdb_00003qpr	Download File View File

HK97 Prohead I encapsidating inactive virally encoded protease

Huang, R.K., Khayat, R., Lee, K.K., Gertsman, I., Duda, R.L., Hendrix, R.W., Johnson, J.E.

(2011) J Mol Biology 408: 541-554

Released	2011-03-30
Method	X-RAY DIFFRACTION 5.2 Å
Organisms	Byrnievirus HK97
Macromolecule	Major capsid protein (protein)

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6MN7 \| pdb_00006mn7	Download File View File

Cryo-EM structure of BG505.SOSIP.664 in complex with BF520.1 antigen binding fragment

Williams, J.A., Lee, K.K., Overbaugh, J.

(2019) Nat Commun 10: 2190-2190

Released	2019-03-06
Method	ELECTRON MICROSCOPY 4.8 Å
Organisms	Homo sapiens Human immunodeficiency virus 1
Macromolecule	BF520.1 Fab variable region (protein) Envelope Glycoprotein gp120 (protein) Envelope Glycoprotein gp41 (protein)
Unique Ligands	NAG
Unique branched monosaccharides	BMA, MAN, NAG

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7N65 \| pdb_00007n65	Download File View File

Complex structure of HIV superinfection Fab QA013.2 and BG505.SOSIP.664

Mangala Prasad, V., Shipley, M.M., Overbaugh, J.M., Lee, K.K.

(2021) Elife 10:

Released	2021-07-28
Method	ELECTRON MICROSCOPY 4.15 Å
Organisms	Homo sapiens Human immunodeficiency virus 1
Macromolecule	Envelope glycoprotein gp41 (protein) Fab QA013.2 Heavy Chain, variable region (protein) Fab QA013.2 Light Chain, , variable region (protein)
Unique Ligands	MAN, NAG
Unique branched monosaccharides	BMA, MAN, NAG

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7SKA \| pdb_00007ska	Download File View File

Sub-tomogram averaged structure of HIV-1 Envelope protein in native membrane

Mangala Prasad, V., Lee, K.K.

(2022) Cell 185: 641-653.e17

Released	2022-03-09
Method	ELECTRON MICROSCOPY 9.1 Å
Organisms	Human immunodeficiency virus 1
Macromolecule	Envelope glycoprotein gp120 (protein) Envelope glycoprotein gp41 (protein)
Unique Ligands	FUC, NAG
Unique branched monosaccharides	BMA, FUC, GAL, MAN, NAG

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8D87 \| pdb_00008d87	Download File View File

Fitted crystal structure of the homotrimer of fusion glycoprotein E1 from SFV into subtomogram averaged CHIKV E1 glycoprotein density

Mangala Prasad, V., Lee, K.K.

(2022) Nat Commun 13: 4772-4772

Released	2022-08-31
Method	ELECTRON MICROSCOPY 27.2 Å
Organisms	Chikungunya virus strain S27-African prototype
Macromolecule	Spike glycoprotein E1 (protein)
Unique Ligands	BR, HO, PO4
Unique branched monosaccharides	BMA, FUC, FUL, MAN, NAG, NDG