RCSB PDB: Search

Warning You are using a web browser that we do not support. Our website will not work properly. Please update to a newer version or download a new web browser, such as Chrome or Firefox.

Help

Help

RCSB PDB

Deposit
- PDBx/mmCIF file
- pdb_extract
- SF-Tool
- Ligand Expo
- MAXIT
- Validation Server
- Validation API
- Information for Journals
- Validation Task Forces
- wwPDB OneDep System
- PDB-IHM
Search
Visualize
Analyze
Download
Learn
- Training Courses
- Guide to PDB Data
- Molecule of the Month
- Educational Resources
- Curricula
- Browse
- News
- SciArt Galleries
- Irving Geis
- David Goodsell
About
Careers
COVID-19

233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

	Include CSM
Advanced Search \| Browse Annotations		Help

Search
Query History
Browse Annotations
MyPDB

QUERY: Structure Author = "Joint Center for Structural Genomics (JCSG)"

MyPDB Login

Search API

Advanced Search Query Builder

Help

Full Text

Structure Attributes

Help

NOT

Count

Add Subquery

Chemical Attributes

Sequence Similarity

Sequence Motif

Structure Similarity

Structure Motif

Chemical Similarity

Return

grouped by

Include Computed Structure Models (CSM)

Count

Clear

Search Summary

This query matches 1,605 Structures.

Refinements

Structure Determination Methodology

experimental (1,605)

Scientific Name of Source Organism

	Thermotoga maritima (141)
	Bacteroides thetaiotaomicron VPI-5482 (76)
	Homo sapiens (62)
	Thermotoga maritima MSB8 (61)
	Parabacteroides distasonis ATCC 8503 (55)
	Bacteroides ovatus ATCC 8483 (49)
	Bacteroides fragilis NCTC 9343 (47)
	Phocaeicola vulgatus ATCC 8482 (33)
	Mus musculus (31)
	Bacteroides uniformis ATCC 8492 (30)

More...

Taxonomy

	Bacteria (1,430)
	Eukaryota (99)
	Archaea (53)
	Riboviria (15)
	unclassified sequences (6)
	other sequences (3)

Experimental Method

	X-RAY DIFFRACTION (1,507)
	SOLUTION NMR (98)

Polymer Entity Type

	Protein (1,605)
	DNA (4)
	RNA (2)

Refinement Resolution (Å)

	0.5 - 1.0 (2)
	1.0 - 1.5 (170)
	1.5 - 2.0 (669)
	2.0 - 2.5 (513)
	2.5 - 3.0 (145)
	3.0 - 3.5 (8)

Release Date

	2000 - 2004 (148)
	2005 - 2009 (810)
	2010 - 2014 (607)
	2015 - 2019 (40)

Enzyme Classification Name

	Transferases (101)
	Hydrolases (97)
	Oxidoreductases (60)
	Lyases (35)
	Ligases (24)
	Isomerases (14)
	Translocases (4)

Membrane Protein Annotation

OPM (3)

Symmetry Type

	Asymmetric (719)
	Cyclic (821)
	Dihedral (213)
	Tetrahedral (3)
	Octahedral (1)

SCOP Classification

	Alpha and beta proteins (a/b) (241)
	Alpha and beta proteins (a+b) (231)
	Artifacts (279)
	All alpha proteins (100)
	All beta proteins (80)
	Multi-domain proteins (alpha and beta) (10)
	Small proteins (6)

AllSelected

1 to 25 of 1,605 Structures

Page 1 of 65

Sort by

Explore in 3D

1J5P \| pdb_00001j5p	Download File View File

Crystal structure of aspartate dehydrogenase (TM1643) from Thermotoga maritima at 1.9 A resolution

Joint Center for Structural Genomics (JCSG)

To be published

Released	2002-07-10
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Thermotoga maritima
Macromolecule	ASPARTATE DEHYDROGENASE (protein)
Unique Ligands	NAD

Explore in 3D

1J5S \| pdb_00001j5s	Download File View File

Crystal structure of uronate isomerase (TM0064) from Thermotoga maritima at 2.85 A resolution

Joint Center for Structural Genomics (JCSG)

(2003) Proteins 53: 142-145

Released	2002-07-17
Method	X-RAY DIFFRACTION 2.85 Å
Organisms	Thermotoga maritima
Macromolecule	URONATE ISOMERASE (protein)

Explore in 3D

1J5T \| pdb_00001j5t	Download File View File

Crystal structure of indole-3-glycerol phosphate synthase (TM0140) from Thermotoga maritima at 3.0 A resolution

Joint Center for Structural Genomics (JCSG)

To be published

Released	2002-07-31
Method	X-RAY DIFFRACTION 3 Å
Organisms	Thermotoga maritima
Macromolecule	INDOLE-3-GLYCEROL PHOSPHATE SYNTHASE (protein)
Unique Ligands	CL

Explore in 3D

1J5U \| pdb_00001j5u	Download File View File

CRYSTAL STRUCTURE OF AN ARCHEASE, POSSIBLE CHAPERONE (TM1083) FROM THERMOTOGA MARITIMA AT 2.0 A RESOLUTION

Joint Center for Structural Genomics (JCSG)

To be published

Released	2002-07-31
Method	X-RAY DIFFRACTION 2 Å
Organisms	Thermotoga maritima
Macromolecule	archease, possible chaperone (protein)
Unique Ligands	CA

Explore in 3D

1J5W \| pdb_00001j5w	Download File View File

Crystal structure of Glycyl-tRNA synthetase alpha chain (TM0216) from Thermotoga maritima at 1.95 A resolution

Joint Center for Structural Genomics (JCSG)

To be published

Released	2002-07-17
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Thermotoga maritima
Macromolecule	Glycyl-tRNA synthetase alpha chain (protein)

Explore in 3D

1J5X \| pdb_00001j5x	Download File View File

Crystal structure of Glucosamine-6-phosphate deaminase (TM0813) from Thermotoga maritima at 1.8 A resolution

Joint Center for Structural Genomics (JCSG)

To be published

Released	2002-07-31
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Thermotoga maritima
Macromolecule	GLUCOSAMINE-6-PHOSPHATE DEAMINASE (protein)

Explore in 3D

1J5Y \| pdb_00001j5y	Download File View File

Crystal structure of transcriptional regulator (TM1602) from Thermotoga maritima at 2.3 A resolution

Joint Center for Structural Genomics (JCSG)

(2007) Proteins 67: 247-252

Released	2002-07-31
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Thermotoga maritima
Macromolecule	TRANSCRIPTIONAL REGULATOR, BIOTIN REPRESSOR FAMILY (protein)
Unique Ligands	K, NI

Explore in 3D

1J6O \| pdb_00001j6o	Download File View File

Crystal structure of TatD-related deoxyribonuclease (TM0667) from Thermotoga maritima at 1.8 A resolution

Joint Center for Structural Genomics (JCSG)

To be published

Released	2002-10-30
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Thermotoga maritima
Macromolecule	TatD-related deoxyribonuclease (protein)
Unique Ligands	IPA

Explore in 3D

1J6P \| pdb_00001j6p	Download File View File

Crystal structure of Metal-dependent hydrolase of cytosinedemaniase/chlorohydrolase family (TM0936) from Thermotoga maritima at 1.9 A resolution

Joint Center for Structural Genomics (JCSG)

To be published

Released	2002-10-30
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Thermotoga maritima
Macromolecule	METAL-DEPENDENT HYDROLASE OF CYTOSINEDEMANIASE/CHLOROHYDROLASE FAMILY (protein)
Unique Ligands	NI

Explore in 3D

1J6R \| pdb_00001j6r	Download File View File

Crystal structure of Activation (AdoMet binding) domain of Methionine synthase (TM0269) from Thermotoga maritima at 2.2 A resolution

Joint Center for Structural Genomics (JCSG)

To be published

Released	2002-08-14
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Thermotoga maritima
Macromolecule	METHIONINE SYNTHASE (protein)

Explore in 3D

1J6U \| pdb_00001j6u	Download File View File

Crystal structure of UDP-N-acetylmuramate-alanine ligase MurC (TM0231) from Thermotoga maritima at 2.3 A resolution

Joint Center for Structural Genomics (JCSG)

(2004) Proteins 55: 1078-1081

Released	2002-11-06
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Thermotoga maritima
Macromolecule	UDP-N-acetylmuramate-alanine ligase MurC (protein)

Explore in 3D

1KQ3 \| pdb_00001kq3	Download File View File

CRYSTAL STRUCTURE OF A GLYCEROL DEHYDROGENASE (TM0423) FROM THERMOTOGA MARITIMA AT 1.5 A RESOLUTION

Wilson, I.A., Miller, M.D., Joint Center for Structural Genomics (JCSG)

(2002) Proc Natl Acad Sci U S A 99: 11664-11669

Released	2002-02-27
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Thermotoga maritima
Macromolecule	glycerol dehydrogenase (protein)
Unique Ligands	CL, TRS, ZN

Explore in 3D

1KQ4 \| pdb_00001kq4	Download File View File

CRYSTAL STRUCTURE OF A THY1-COMPLEMENTING PROTEIN (TM0449) FROM THERMOTOGA MARITIMA AT 2.25 A RESOLUTION

Wilson, I.A., Miller, M.D., Joint Center for Structural Genomics (JCSG)

(2002) Proc Natl Acad Sci U S A 99: 11664-11669

Released	2002-02-27
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Thermotoga maritima
Macromolecule	HYPOTHETICAL PROTEIN TM0449 (protein)
Unique Ligands	FAD

Explore in 3D

1LME \| pdb_00001lme	Download File View File

Crystal Structure of Peptide Deformylase from Thermotoga maritima

Kreusch, A., Spraggon, G., Lee, C.C., Klock, H., McMullan, D., Ng, K., Shin, T., Vincent, J., Warner, I., Ericson, C., Lesley, S.A., Joint Center for Structural Genomics (JCSG)

(2003) J Mol Biology 330: 309-321

Released	2003-06-24
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Thermotoga maritima
Macromolecule	peptide deformylase (protein)

Explore in 3D

1O0W \| pdb_00001o0w	Download File View File

Crystal structure of Ribonuclease III (TM1102) from Thermotoga maritima at 2.0 A resolution

Joint Center for Structural Genomics (JCSG)

To be published

Released	2002-11-13
Method	X-RAY DIFFRACTION 2 Å
Organisms	Thermotoga maritima
Macromolecule	Ribonuclease III (protein)

Explore in 3D

1O0X \| pdb_00001o0x	Download File View File

Crystal structure of Methionine aminopeptidase (TM1478) from Thermotoga maritima at 1.90 A resolution

Joint Center for Structural Genomics (JCSG)

(2004) Proteins 56: 396-400

Released	2002-11-06
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Thermotoga maritima
Macromolecule	Methionine aminopeptidase (protein)

Explore in 3D

1O12 \| pdb_00001o12	Download File View File

Crystal structure of N-acetylglucosamine-6-phosphate deacetylase (TM0814) from Thermotoga maritima at 2.5 A resolution

Joint Center for Structural Genomics (JCSG)

To be published

Released	2002-12-18
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Thermotoga maritima
Macromolecule	N-acetylglucosamine-6-phosphate deacetylase (protein)
Unique Ligands	FE

Explore in 3D

1O13 \| pdb_00001o13	Download File View File

Crystal structure of a putative dinitrogenase iron-molybdenum cofactor (tm1816) from thermotoga maritima at 1.83 A resolution

Joint Center for Structural Genomics (JCSG)

To be published

Released	2002-12-18
Method	X-RAY DIFFRACTION 1.83 Å
Organisms	Thermotoga maritima
Macromolecule	probable NifB protein (protein)

Explore in 3D

1O1X \| pdb_00001o1x	Download File View File

Crystal structure of a ribose 5-phosphate isomerase rpib (tm1080) from thermotoga maritima at 1.90 A resolution

Joint Center for Structural Genomics (JCSG)

(2004) Proteins 56: 171-175

Released	2003-04-01
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Thermotoga maritima
Macromolecule	ribose-5-phosphate isomerase RpiB (protein)
Unique Ligands	MPD

Explore in 3D

1O1Y \| pdb_00001o1y	Download File View File

Crystal structure of a glutamine amidotransferase (tm1158) from thermotoga maritima at 1.70 A resolution

Joint Center for Structural Genomics (JCSG)

(2004) Proteins 54: 801-805

Released	2003-03-11
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Thermotoga maritima
Macromolecule	conserved hypothetical protein TM1158 (protein)
Unique Ligands	SO4

Explore in 3D

1O1Z \| pdb_00001o1z	Download File View File

Crystal structure of glycerophosphodiester phosphodiesterase (GDPD) (TM1621) from Thermotoga maritima at 1.60 A resolution

Joint Center for Structural Genomics (JCSG)

(2004) Proteins 56: 167-170

Released	2003-04-01
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Thermotoga maritima
Macromolecule	glycerophosphodiester phosphodiesterase (protein)
Unique Ligands	NA