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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Bolognesi, M."

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Search Summary

This query matches 273 Structures.

Refinements

Structure Determination Methodology

experimental (273)

Scientific Name of Source Organism

	Homo sapiens (83)
	Methanosarcina acetivorans (18)
	Escherichia coli (14)
	Mycobacterium tuberculosis (13)
	Cerebratulus lacteus (9)
	Photobacterium leiognathi subsp. leiognathi (8)
	Aplysia limacina (6)
	Burkholderia pseudomallei K96243 (6)
	Severe acute respiratory syndrome coronavirus 2 (6)
	Wesselsbron virus (6)

More...

Taxonomy

	Eukaryota (149)
	Bacteria (80)
	Archaea (26)
	Riboviria (24)
	Duplodnaviria (5)
	Eukaryota (eukaryotes) (1)
	other sequences (1)
	unclassified sequences (1)

Experimental Method

	X-RAY DIFFRACTION (252)
	ELECTRON MICROSCOPY (20)
	SOLUTION NMR (1)

Polymer Entity Type

	Protein (273)
	DNA (5)

Refinement Resolution (Å)

	1.0 - 1.5 (28)
	1.5 - 2.0 (91)
	2.0 - 2.5 (80)
	2.5 - 3.0 (36)
	3.0 - 3.5 (20)
	3.5 - 4.0 (11)
	4.0 - 4.5 (6)

Release Date

	1980 - 1984 (1)
	1990 - 1994 (15)
	1995 - 1999 (23)
	2000 - 2004 (56)
	2005 - 2009 (44)
	2010 - 2014 (72)
	2015 - 2019 (41)
	2020 - 2024 (21)

Enzyme Classification Name

	Oxidoreductases (51)
	Transferases (31)
	Hydrolases (20)
	Ligases (9)
	Isomerases (7)
	Lyases (1)

Membrane Protein Annotation

	OPM (4)
	MemProtMD (3)
	PDBTM (3)
	mpstruc (2)

Symmetry Type

	Asymmetric (168)
	Cyclic (97)
	Dihedral (20)
	Helical (1)

SCOP Classification

	All beta proteins (70)
	All alpha proteins (70)
	Alpha and beta proteins (a+b) (18)
	Alpha and beta proteins (a/b) (34)
	Artifacts (15)
	Multi-domain proteins (alpha and beta) (9)
	Small proteins (6)
	Coiled coil proteins (2)

AllSelected

1 to 25 of 273 Structures

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1ACB \| pdb_00001acb	Download File View File

CRYSTAL AND MOLECULAR STRUCTURE OF THE BOVINE ALPHA-CHYMOTRYPSIN-EGLIN C COMPLEX AT 2.0 ANGSTROMS RESOLUTION

Bolognesi, M., Frigerio, F., Coda, A., Pugliese, L., Lionetti, C., Menegatti, E., Amiconi, G., Schnebli, H.P., Ascenzi, P.

(1992) J Mol Biology 225: 107-123

Released	1993-10-31
Method	X-RAY DIFFRACTION 2 Å
Organisms	Bos taurus Hirudo medicinalis
Macromolecule	ALPHA-CHYMOTRYPSIN (protein) Eglin C (protein)

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1AE8 \| pdb_00001ae8	Download File View File

HUMAN ALPHA-THROMBIN INHIBITION BY EOC-D-PHE-PRO-AZALYS-ONP

De Simone, G., Balliano, G., Milla, P., Gallina, C., Giordano, C., Tarricone, C., Rizzi, M., Bolognesi, M., Ascenzi, P.

(1997) J Mol Biology 269: 558-569

Released	1997-12-03
Method	X-RAY DIFFRACTION 2 Å
Organisms	Hirudo medicinalis Homo sapiens
Macromolecule	ALPHA-THROMBIN (LARGE SUBUNIT) (protein) ALPHA-THROMBIN (SMALL SUBUNIT) (protein) HIRUGEN (protein)
Unique Ligands	AZL, NAG

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1AFE \| pdb_00001afe	Download File View File

HUMAN ALPHA-THROMBIN INHIBITION BY CBZ-PRO-AZALYS-ONP

De Simone, G., Balliano, G., Milla, P., Gallina, C., Giordano, C., Tarricone, C., Rizzi, M., Bolognesi, M., Ascenzi, P.

(1997) J Mol Biology 269: 558-569

Released	1997-12-03
Method	X-RAY DIFFRACTION 2 Å
Organisms	Hirudo medicinalis Homo sapiens
Macromolecule	ALPHA-THROMBIN (LARGE SUBUNIT) (protein) ALPHA-THROMBIN (SMALL SUBUNIT) (protein) HIRUGEN (protein)
Unique Ligands	ALZ, NAG

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1AVD \| pdb_00001avd	Download File View File

THREE-DIMENSIONAL STRUCTURE OF THE TETRAGONAL CRYSTAL FORM OF EGG-WHITE AVIDIN IN ITS FUNCTIONAL COMPLEX WITH BIOTIN AT 2.7 ANGSTROMS RESOLUTION

Pugliese, L., Coda, A., Malcovati, M., Bolognesi, M.

(1993) J Mol Biology 231: 698-710

Released	1994-01-31
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Gallus gallus
Macromolecule	AVIDIN (protein)
Unique Ligands	BTN, NAG

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1AVE \| pdb_00001ave	Download File View File

CRYSTAL STRUCTURE OF HEN EGG-WHITE APO-AVIDIN IN RELATION TO ITS THERMAL STABILITY PROPERTIES

Pugliese, L., Coda, A., Malcovati, M., Bolognesi, M.

(1994) J Mol Biology 235: 42-46

Released	1994-01-31
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Gallus gallus
Macromolecule	AVIDIN (protein)
Unique Ligands	NAG

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1B0B \| pdb_00001b0b	Download File View File

HEMOGLOBIN I FROM THE CLAM LUCINA PECTINATA, CYANIDE COMPLEX AT 100 KELVIN

Rosano, C., Rizzi, M., Ascenzi, P., Bolognesi, M.

(1999) Biophys J 77: 1093-1099

Released	2000-02-18
Method	X-RAY DIFFRACTION 1.43 Å
Organisms	Phacoides pectinatus
Macromolecule	HEMOGLOBIN (protein)
Unique Ligands	CYN, HEM

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1BWS \| pdb_00001bws	Download File View File

CRYSTAL STRUCTURE OF GDP-4-KETO-6-DEOXY-D-MANNOSE EPIMERASE/REDUCTASE FROM ESCHERICHIA COLI A KEY ENZYME IN THE BIOSYNTHESIS OF GDP-L-FUCOSE

Rizzi, M., Tonetti, M., Flora, A.D., Bolognesi, M.

(1998) Structure 6: 1453-1465

Released	1999-01-13
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Escherichia coli
Macromolecule	PROTEIN (GDP-4-KETO-6-DEOXY-D-MANNOSE EPIMERASE/REDUCTASE) (protein)
Unique Ligands	NDP

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1BZO \| pdb_00001bzo	Download File View File

THREE-DIMENSIONAL STRUCTURE OF PROKARYOTIC CU,ZN SUPEROXIDE DISMUTASE FROM P.LEIOGNATHI, SOLVED BY X-RAY CRYSTALLOGRAPHY.

Bordo, D., Matak, D., Djinovic-Carugo, K., Rosano, C., Pesce, A., Bolognesi, M., Stroppolo, M.E., Falconi, M., Battistoni, A., Desideri, A.

(1999) J Mol Biology 285: 283-296

Released	1999-04-09
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Photobacterium leiognathi subsp. leiognathi
Macromolecule	PROTEIN (SUPEROXIDE DISMUTASE) (protein)
Unique Ligands	CU, IUM, ZN

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1COB \| pdb_00001cob	Download File View File

CRYSTAL STRUCTURE SOLUTION AND REFINEMENT OF THE SEMISYNTHETIC COBALT SUBSTITUTED BOVINE ERYTHROCYTE ENZYME SUPEROXIDE DISMUTASE AT 2.0 ANGSTROMS RESOLUTION

Djinovic, K., Coda, A., Antolini, L., Pelosi, G., Desideri, A., Falconi, M., Rotilio, G., Bolognesi, M.

(1992) J Mol Biology 226: 227-238

Released	1993-10-31
Method	X-RAY DIFFRACTION 2 Å
Organisms	Bos taurus
Macromolecule	SUPEROXIDE DISMUTASE (protein)
Unique Ligands	CO, CU

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1DKE \| pdb_00001dke	Download File View File

NI BETA HEME HUMAN HEMOGLOBIN

Bruno, S., Bettatti, S., Mozzarelli, A., Bolognesi, M., Deriu, D., Rosano, C., Tsuneshige, A., Yonetani, T., Henry, E.R.

(2000) Protein Sci 9: 683-692

Released	2000-05-23
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	HEMOGLOBIN: ALPHA CHAIN (protein) HEMOGLOBIN: BETA CHAIN (protein)
Unique Ligands	HEM, SO4

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1DLW \| pdb_00001dlw	Download File View File

X-RAY CRYSTAL STRUCTURE OF TRUNCATED HEMOGLOBIN FROM P.CAUDATUM.

Pesce, A., Couture, M., Guertin, M., Dewilde, S., Moens, L., Bolognesi, M.

(2000) EMBO J 19: 2424-2434

Released	2000-09-20
Method	X-RAY DIFFRACTION 1.54 Å
Organisms	Paramecium caudatum
Macromolecule	HEMOGLOBIN (protein)
Unique Ligands	HEM

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1DLY \| pdb_00001dly	Download File View File

X-RAY CRYSTAL STRUCTURE OF HEMOGLOBIN FROM THE GREEN UNICELLULAR ALGA CHLAMYDOMONAS EUGAMETOS

Pesce, A., Couture, M., Guertin, M., Dewilde, S., Moens, L., Bolognesi, M.

(2000) EMBO J 19: 2424-2434

Released	2000-09-20
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Chlamydomonas moewusii
Macromolecule	HEMOGLOBIN (protein)
Unique Ligands	CYN, EDO, HEM, SO4

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1E0C \| pdb_00001e0c	Download File View File

SULFURTRANSFERASE FROM AZOTOBACTER VINELANDII

Bordo, D., Deriu, D., Colnaghi, R., Carpen, A., Pagani, S., Bolognesi, M.

(2000) J Mol Biology 298: 691

Released	2000-05-08
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Azotobacter vinelandii
Macromolecule	SULFURTRANSFERASE (protein)
Unique Ligands	EDO, MG, SO4

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1E6U \| pdb_00001e6u	Download File View File

GDP 4-keto-6-deoxy-D-mannose epimerase reductase

Rosano, C., Izzo, G., Bolognesi, M.

(2000) J Mol Biology 303: 77

Released	2000-10-22
Method	X-RAY DIFFRACTION 1.45 Å
Organisms	Escherichia coli
Macromolecule	GDP-FUCOSE SYNTHETASE (protein)
Unique Ligands	NAP, SO4, TRS, UVW

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1E7Q \| pdb_00001e7q	Download File View File

GDP 4-keto-6-deoxy-D-mannose epimerase reductase S107A

Rosano, C., Izzo, G., Bolognesi, M.

(2000) J Mol Biology 303: 77

Released	2000-10-18
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Escherichia coli
Macromolecule	GDP-FUCOSE SYNTHETASE (protein)
Unique Ligands	NAP, SO4, TRS, UVW

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1E7R \| pdb_00001e7r	Download File View File

GDP 4-keto-6-deoxy-D-mannose epimerase reductase Y136E

Rosano, C., Izzo, G., Bolognesi, M.

(2000) J Mol Biology 303: 77

Released	2000-10-18
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Escherichia coli
Macromolecule	GDP-FUCOSE SYNTHETASE (protein)
Unique Ligands	NAP, SO4, TRS, UVW

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1E7S \| pdb_00001e7s	Download File View File

GDP 4-keto-6-deoxy-D-mannose epimerase reductase K140R

Rosano, C., Zuccotti, S., Izzo, G., Bolognesi, M.

(2000) J Mol Biology 303: 77

Released	2000-10-18
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Escherichia coli
Macromolecule	GDP-FUCOSE SYNTHETASE (protein)
Unique Ligands	NAP, SO4, TRS, UVW

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1EBC \| pdb_00001ebc	Download File View File

SPERM WHALE MET-MYOGLOBIN:CYANIDE COMPLEX

Rosano, C., Ascenzi, P., Rizzi, M., Losso, R., Bolognesi, M.

(1999) Biophys J 77: 1093-1099

Released	1999-08-13
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Physeter macrocephalus
Macromolecule	PROTEIN (MYOGLOBIN) (protein)
Unique Ligands	CYN, HEM, SO4

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1EBT \| pdb_00001ebt	Download File View File

HEMOGLOBIN I FROM THE CLAM LUCINA PECTINATA BOUND WITH CYANIDE

Rosano, C., Bolognesi, M., Ascenzi, P.

(1999) Biophys J 77: 1093-1099

Released	2000-01-13
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Phacoides pectinatus
Macromolecule	HEMOGLOBIN (protein)
Unique Ligands	CYN, HEM

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1EQW \| pdb_00001eqw	Download File View File

CRYSTAL STRUCTURE OF SALMONELLA TYPHIMURIUM CU,ZN SUPEROXIDE DISMUTASE

Pesce, A., Battistoni, A., Stroppolo, M.E., Polizio, F., Nardini, M., Kroll, J.S., Langford, P.R., O'Neill, P., Sette, M., Desideri, A., Bolognesi, M.

(2000) J Mol Biology 302: 465-478

Released	2000-09-08
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Salmonella enterica subsp. enterica serovar Typhimurium
Macromolecule	CU,ZN SUPEROXIDE DISMUTASE (protein)
Unique Ligands	CU, ZN

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1ESO \| pdb_00001eso	Download File View File

MONOMERIC CU,ZN SUPEROXIDE DISMUTASE FROM ESCHERICHIA COLI

Pesce, A., Capasso, C., Battistoni, A., Folcarelli, S., Rotilio, G., Desideri, A., Bolognesi, M.

(1997) J Mol Biology 274: 408-420

Released	1998-07-01
Method	X-RAY DIFFRACTION 2 Å
Organisms	Escherichia coli
Macromolecule	CU, ZN SUPEROXIDE DISMUTASE (protein)
Unique Ligands	CU, ZN

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1FCS \| pdb_00001fcs	Download File View File

CRYSTAL STRUCTURE OF A DISTAL SITE DOUBLE MUTANT OF SPERM WHALE MYOGLOBIN AT 1.6 ANGSTROMS RESOLUTION

Rizzi, M., Bolognesi, M., Coda, A., Cutruzzola, F., Travaglini Allocatelli, C., Brancaccio, A., Brunori, M.

(1993) FEBS Lett 320: 13-16

Released	1993-10-31
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Physeter macrocephalus
Macromolecule	MYOGLOBIN (protein)
Unique Ligands	HEM, SO4

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1FLP \| pdb_00001flp	Download File View File

STRUCTURE OF THE SULFIDE-REACTIVE HEMOGLOBIN FROM THE CLAM LUCINA PECTINATA: CRYSTALLOGRAPHIC ANALYSIS AT 1.5 ANGSTROMS RESOLUTION

Rizzi, M., Wittenberg, J.B., Ascenzi, P., Fasano, M., Coda, A., Bolognesi, M.

(1994) J Mol Biology 244: 86-99

Released	1994-07-31
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Phacoides pectinatus
Macromolecule	HEMOGLOBIN I (AQUO MET) (protein)
Unique Ligands	HEM

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1G8Q \| pdb_00001g8q	Download File View File

CRYSTAL STRUCTURE OF HUMAN CD81 EXTRACELLULAR DOMAIN, A RECEPTOR FOR HEPATITIS C VIRUS

Kitadokoro, K., Bolognesi, M., Bordo, D., Grandi, G., Galli, G., Petracca, R., Falugi, F.

(2001) EMBO J 20: 12-18

Released	2001-02-21
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Homo sapiens
Macromolecule	CD81 ANTIGEN, EXTRACELLULAR DOMAIN (protein)

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1GMX \| pdb_00001gmx	Download File View File

Escherichia coli GlpE sulfurtransferase

Spallarossa, A., Donahue, J.T., Larson, T.J., Bolognesi, M., Bordo, D.

(2001) Structure 9: 1117

Released	2001-11-28
Method	X-RAY DIFFRACTION 1.1 Å
Organisms	Escherichia coli BL21(DE3)
Macromolecule	THIOSULFATE SULFURTRANSFERASE GLPE (protein)
Unique Ligands	ACT, EDO

1 to 25 of 273 Structures

Page 1 of 11

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1ACB | pdb_00001acb

1AE8 | pdb_00001ae8

1AFE | pdb_00001afe

1AVD | pdb_00001avd

1AVE | pdb_00001ave

1B0B | pdb_00001b0b

1BWS | pdb_00001bws

1BZO | pdb_00001bzo

1COB | pdb_00001cob

1DKE | pdb_00001dke

1DLW | pdb_00001dlw

1DLY | pdb_00001dly

1E0C | pdb_00001e0c

1E6U | pdb_00001e6u

1E7Q | pdb_00001e7q

1E7R | pdb_00001e7r

1E7S | pdb_00001e7s

1EBC | pdb_00001ebc

1EBT | pdb_00001ebt

1EQW | pdb_00001eqw

1ESO | pdb_00001eso

1FCS | pdb_00001fcs

1FLP | pdb_00001flp

1G8Q | pdb_00001g8q

1GMX | pdb_00001gmx