RCSB PDB: Search

3J3Z \| pdb_00003j3z	Download File View File

Structure of MA28-7 neutralizing antibody Fab fragment from electron cryo-microscopy of enterovirus 71 complexed with a Fab fragment

Lee, H., Cifuente, J.O., Ashley, R.E., Conway, J.F., Makhov, A.M., Tano, Y., Shimizu, H., Nishimura, Y., Hafenstein, S.

(2013) J Virol 87: 11363-11370

Released	2013-08-28
Method	ELECTRON MICROSCOPY 23.4 Å
Organisms	Mus musculus
Macromolecule	MA28-7 neutralizing antibody heavy chain (protein) MA28-7 neutralizing antibody light chain (protein)

Explore in 3D

3J91 \| pdb_00003j91	Download File View File

Cryo-electron microscopy of Enterovirus 71 (EV71) procapsid in complex with Fab fragments of neutralizing antibody 22A12

Shingler, K.L., Cifuente, J.O., Ashley, R.E., Makhov, A.M., Conway, J.F., Hafenstein, S.

(2015) J Virol 89: 1900-1908

Released	2014-12-10
Method	ELECTRON MICROSCOPY 8.8 Å
Organisms	Enterovirus A71
Macromolecule	VP0 (protein) VP1 (protein) VP3 (protein)

Explore in 3D

3J93 \| pdb_00003j93	Download File View File

Fitting of Fab into the cryoEM density map of EV71 procapsid in complex with Fab22A12

Shingler, K.L., Cifuente, J.O., Ashley, R.E., Makhov, A.M., Conway, J.F., Hafenstein, S.

(2015) J Virol 89: 1900-1908

Released	2014-12-24
Method	ELECTRON MICROSCOPY 8.8 Å
Organisms	Mus musculus
Macromolecule	neutralizing antibody 22A12, heavy chain (protein) neutralizing antibody 22A12, light chain (protein)

Explore in 3D

3JBA \| pdb_00003jba	Download File View File

The U4 antibody epitope on human papillomavirus 16 identified by cryo-EM

Guan, J., Bywaters, S.M., Brendle, S.A., Lee, H., Ashley, R.E., Christensen, N.D., Hafenstein, S.

(2015) J Virol 89: 12108-12117

Released	2015-10-07
Method	ELECTRON MICROSCOPY 12 Å
Organisms	Human papillomavirus 16 Mus musculus
Macromolecule	H16.U4 antibody heavy chain (protein) H16.U4 antibody light chain (protein) Major capsid protein L1 (protein)

Explore in 3D

3JCX \| pdb_00003jcx	Download File View File

Canine Parvovirus complexed with Fab E

Organtini, L.J., Iketani, S., Huang, K., Ashley, R.E., Makhov, A.M., Conway, J.F., Parrish, C.R., Hafenstein, S.

(2016) J Virol 90: 9733-9742

Released	2016-07-20
Method	ELECTRON MICROSCOPY 4.1 Å
Organisms	Canine parvovirus Rattus norvegicus
Macromolecule	Capsid protein 2 (protein) Fab E heavy chain (protein) Fab E light chain (protein)

Explore in 3D

3JD7 \| pdb_00003jd7	Download File View File

The novel asymmetric entry intermediate of a picornavirus captured with nanodiscs

Lee, H., Shingler, K.L., Organtini, L.J., Ashley, R.E., Makhov, A.M., Conway, J.F., Hafenstein, S.

(2016) Sci Adv 2: e1501929-e1501929

Released	2016-09-14
Method	ELECTRON MICROSCOPY 3.9 Å
Organisms	Coxsackievirus B3
Macromolecule	Capsid protein VP1 (protein) Capsid protein VP2 (protein) Capsid protein VP3 (protein) Capsid protein VP4 (protein)
Unique Ligands	PLM

Explore in 3D

5KEP \| pdb_00005kep	Download File View File

High resolution cryo-EM maps of Human Papillomavirus 16 reveal L2 location and heparin-induced conformational changes

Guan, J., Bywaters, S.M., Brendle, S.A., Ashley, R.E., Makhov, A.M., Conway, J.F., Christensen, N.D., Hafenstein, S.

(2017) Structure 25: 253-263

Released	2017-01-25
Method	ELECTRON MICROSCOPY 4.3 Å
Organisms	Human papillomavirus 16
Macromolecule	Major capsid protein L1 (protein)

Explore in 3D

5KEQ \| pdb_00005keq	Download File View File

High resolution cryo-EM maps of Human papillomavirus 16 reveal L2 location and heparin-induced conformational changes

Guan, J., Bywaters, S.M., Brendle, S.A., Ashley, R.E., Makhov, A.M., Conway, J.F., Christensen, N.D., Hafenstein, S.

(2017) Structure 25: 253-263

Released	2017-01-25
Method	ELECTRON MICROSCOPY 4.3 Å
Organisms	Human papillomavirus 16
Macromolecule	Major capsid protein L1 (protein)

Explore in 3D

6BSP \| pdb_00006bsp	Download File View File

High-Resolution Structure Analysis of Antibody V5 and U4 Conformational Epitope on Human Papillomavirus 16

Guan, J., Bywaters, S.M., Brendle, S.A., Ashley, R.E., Makhov, A.M., Conway, J.F., Christenson, N.D., Hafenstein, S.

(2017) Viruses 9:

Released	2018-02-14
Method	ELECTRON MICROSCOPY 4.7 Å
Organisms	Human papillomavirus 16 Mus musculus
Macromolecule	Major capsid protein L1 (protein) U4 Heavy chain (protein) U4 Light chain (protein)

Explore in 3D

6BT3 \| pdb_00006bt3	Download File View File

High-Resolution Structure Analysis of Antibody V5 Conformational Epitope on Human Papillomavirus 16

Guan, J., Bywaters, S.M., Brendle, S.A., Ashley, R.E., Makhov, A.M., Conway, J.F., Christensen, N.D., Hafenstein, S.

(2017) Viruses 9:

Released	2018-01-17
Method	ELECTRON MICROSCOPY 4.7 Å
Organisms	Human papillomavirus 16 Mus musculus
Macromolecule	Major capsid protein L1 (protein) V5 Fab Heavy-chain (protein) V5 Fab Light-chain (protein)

3J3Z | pdb_00003j3z

Structure of MA28-7 neutralizing antibody Fab fragment from electron cryo-microscopy of enterovirus 71 complexed with a Fab fragment

3J91 | pdb_00003j91

Cryo-electron microscopy of Enterovirus 71 (EV71) procapsid in complex with Fab fragments of neutralizing antibody 22A12

3J93 | pdb_00003j93

Fitting of Fab into the cryoEM density map of EV71 procapsid in complex with Fab22A12

3JBA | pdb_00003jba

The U4 antibody epitope on human papillomavirus 16 identified by cryo-EM

3JCX | pdb_00003jcx

Canine Parvovirus complexed with Fab E

3JD7 | pdb_00003jd7

The novel asymmetric entry intermediate of a picornavirus captured with nanodiscs

5KEP | pdb_00005kep

High resolution cryo-EM maps of Human Papillomavirus 16 reveal L2 location and heparin-induced conformational changes

5KEQ | pdb_00005keq

High resolution cryo-EM maps of Human papillomavirus 16 reveal L2 location and heparin-induced conformational changes

6BSP | pdb_00006bsp

High-Resolution Structure Analysis of Antibody V5 and U4 Conformational Epitope on Human Papillomavirus 16

6BT3 | pdb_00006bt3

High-Resolution Structure Analysis of Antibody V5 Conformational Epitope on Human Papillomavirus 16

Prepare Data

Validate Data

Deposit Data

Help and Resources

Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Symmetry Type

3J3Z | pdb_00003j3z

3J91 | pdb_00003j91

3J93 | pdb_00003j93

3JBA | pdb_00003jba

3JCX | pdb_00003jcx

3JD7 | pdb_00003jd7

5KEP | pdb_00005kep

5KEQ | pdb_00005keq

6BSP | pdb_00006bsp

6BT3 | pdb_00006bt3