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233,249 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Source Organism Taxonomy Name (Full Lineage) = "Staphylococcus pseudintermedius"

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Search Summary

This query matches 11 Structures.

Refinements

Structure Determination Methodology

	experimental (8)
	computational (3)

CSM Source Database

AlphaFoldDB (3)

pLDDT Global Quality Score

	70.0 - 90.0 (2)
	> 90.0 (1)

Scientific Name of Source Organism

	Staphylococcus pseudintermedius (9)
	Staphylococcus pseudintermedius ED99 (1)
	Staphylococcus pseudintermedius HKU10-03 (1)

Taxonomy

Bacteria (11)

Experimental Method

	X-RAY DIFFRACTION (6)
	SOLUTION NMR (2)

Polymer Entity Type

Protein (11)

Refinement Resolution (Å)

	1.5 - 2.0 (2)
	2.0 - 2.5 (2)
	2.5 - 3.0 (2)

Release Date

	2010 - 2014 (2)
	2015 - 2019 (5)
	2020 - 2024 (4)

Enzyme Classification Name

Hydrolases (1)

Symmetry Type

	Asymmetric (9)
	Cyclic (3)
	Dihedral (1)

SCOP Classification

	Alpha and beta proteins (a/b) (2)
	All beta proteins (1)

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1 to 11 of 11 Structures

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4OXQ \| pdb_00004oxq	Download File View File

Structure of Staphylococcus pseudintermedius metal-binding protein SitA in complex with Zinc

Abate, F., Malito, E., Bottomley, M.

(2014) Biosci Rep 34: e00154-e00154

Released	2014-10-29
Method	X-RAY DIFFRACTION 2.62 Å
Organisms	Staphylococcus pseudintermedius
Macromolecule	Manganese ABC transporter, periplasmic-binding protein SitA (protein)
Unique Ligands	ZN

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4OXR \| pdb_00004oxr	Download File View File

Structure of Staphylococcus pseudintermedius metal-binding protein SitA in complex with Manganese

Abate, F., Malito, E., Bottomley, M.

(2014) Biosci Rep 34: e00154-e00154

Released	2014-10-29
Method	X-RAY DIFFRACTION 2 Å
Organisms	Staphylococcus pseudintermedius
Macromolecule	Manganese ABC transporter, periplasmic-binding protein SitA (protein)
Unique Ligands	MN

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5FLY \| pdb_00005fly	Download File View File

The FhuD protein from S.pseudintermedius

Malito, E.

(2016) Acta Crystallogr Sect F Struct Biol Cryst Commun 72: 214

Released	2015-12-02
Method	X-RAY DIFFRACTION 1.598 Å
Organisms	Staphylococcus pseudintermedius
Macromolecule	Ferrichrome ABC transporter substrate-binding protein (protein)
Unique Ligands	7PG, CD, CL

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5LWC \| pdb_00005lwc	Download File View File

NMR solution structure of bacteriocin BacSp222 from Staphylococcus pseudintermedius 222

Nowakowski, M.E., Ejchart, A.O., Jaremko, L., Wladyka, B., Mak, P.

(2018) Int J Biol Macromol 107: 2715-2724

Released	2017-10-25
Method	SOLUTION NMR
Organisms	Staphylococcus pseudintermedius
Macromolecule	Bacteriocin BacSp222 (protein)

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5UJD \| pdb_00005ujd	Download File View File

SbnI from Staphylococcus pseudintermedius

Murphy, M.E.P., Verstraete, M.M.

(2019) J Biological Chem 294: 11622-11636

Released	2018-01-24
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Staphylococcus pseudintermedius
Macromolecule	Siderophore biosynthesis protein SbnI (protein)
Unique Ligands	FMT

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6E0U \| pdb_00006e0u	Download File View File

Staphylococcus pseudintermedius exfoliative toxin EXI

Boone, C.D., Laganowsky, A.

To be published

Released	2019-07-10
Method	X-RAY DIFFRACTION 2.75 Å
Organisms	Staphylococcus pseudintermedius
Macromolecule	Serine protease (protein)

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6NR6 \| pdb_00006nr6	Download File View File

Crystal Structure of Staphylococcus pseudintermedius SbnI in complex with ADP

Verstraete, M.M., Morales, L.D., Kobylarz, M.J., Loutet, S.A., Laakso, H.A., Heinrichs, D.E., Murphy, M.E.P.

(2019) J Biological Chem 294: 11622-11636

Released	2019-06-19
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Staphylococcus pseudintermedius
Macromolecule	Bifunctional transcriptional regulator/O-phospho-L-serine synthase SbnI (protein)
Unique Ligands	ADP, MG

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7NYI \| pdb_00007nyi	Download File View File

BacSp222 bacteriocin: succinyl-K20 form

Nowakowski, M., Mak, P., Smialek, J.

(2021) Int J Mol Sci 22:

Released	2021-07-07
Method	SOLUTION NMR
Organisms	Staphylococcus pseudintermedius
Macromolecule	Bacteriocin BacSp222 (protein)

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AF_AFA0A0P0C3P7F1	Download File

Computed structure model of Bacteriocin BacSp222

AlphaFold DB	AF-A0A0P0C3P7-F1
pLDDT (global)	93.19
Organisms	Staphylococcus pseudintermedius
Macromolecule	Bacteriocin BacSp222 (protein)

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AF_AFE8SFP1F1	Download File

Computed structure model of Cell division protein DivIB

AlphaFold DB	AF-E8SFP1-F1
pLDDT (global)	84.77
Organisms	Staphylococcus pseudintermedius HKU10-03
Macromolecule	Cell division protein DivIB (protein)

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AF_AFF0P5S5F1	Download File

Computed structure model of Accessory Sec system protein translocase subunit SecY2

AlphaFold DB	AF-F0P5S5-F1
pLDDT (global)	83.47
Organisms	Staphylococcus pseudintermedius ED99
Macromolecule	Accessory Sec system protein translocase subunit SecY2 (protein)

1 to 11 of 11 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

4OXQ | pdb_00004oxq

Structure of Staphylococcus pseudintermedius metal-binding protein SitA in complex with Zinc

4OXR | pdb_00004oxr

Structure of Staphylococcus pseudintermedius metal-binding protein SitA in complex with Manganese

5FLY | pdb_00005fly

The FhuD protein from S.pseudintermedius

5LWC | pdb_00005lwc

NMR solution structure of bacteriocin BacSp222 from Staphylococcus pseudintermedius 222

5UJD | pdb_00005ujd

SbnI from Staphylococcus pseudintermedius

6E0U | pdb_00006e0u

Staphylococcus pseudintermedius exfoliative toxin EXI

6NR6 | pdb_00006nr6

Crystal Structure of Staphylococcus pseudintermedius SbnI in complex with ADP

7NYI | pdb_00007nyi

BacSp222 bacteriocin: succinyl-K20 form

AF_AFA0A0P0C3P7F1

Computed structure model of Bacteriocin BacSp222

AF_AFE8SFP1F1

Computed structure model of Cell division protein DivIB

AF_AFF0P5S5F1

Computed structure model of Accessory Sec system protein translocase subunit SecY2

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Structure Determination Methodology

CSM Source Database

pLDDT Global Quality Score

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

4OXQ | pdb_00004oxq

4OXR | pdb_00004oxr

5FLY | pdb_00005fly

5LWC | pdb_00005lwc

5UJD | pdb_00005ujd

6E0U | pdb_00006e0u

6NR6 | pdb_00006nr6

7NYI | pdb_00007nyi