5H5I | pdb_00005h5i


GDP: GUANOSINE-5'-DIPHOSPHATE

GDP is a Ligand Of Interest in 5H5I designated by the RCSB
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Created with Raphaël 2.3.0WorseGeometryBetterWorseExperiment Data FittingBetter5H5I_GDP_A_401Click to see a 3Delectron density viewof this ligand instance
Created with Raphaël 2.3.0WorseGeometryBetterWorseExperiment Data FittingBetter5H5I_GDP_A_401Click to see a 3Delectron density viewof this ligand instance
Created with Raphaël 2.3.0WorseGeometryBetterWorseExperiment Data FittingBetter5H5I_GDP_A_401Click to see a 3Delectron density viewof this ligand instance
Created with Raphaël 2.3.0
Best-fitted instance in this entry
Created with Raphaël 2.3.0
Other instances in this entry
Created with Raphaël 2.3.0
Best-fitted instance in this entry
Created with Raphaël 2.3.0
Best-fitted PDB instances with same target (top 5)
Created with Raphaël 2.3.0
Best-fitted instance in this entry
Created with Raphaël 2.3.0
Best-fitted PDB instances with different target (top 5)
IdentifierRanking for goodness of fit Ranking for geometry Real space R factor Real space correlation coefficient RMSZ-bond-length RMSZ-bond-angleOutliers of bond length Outliers of bond angle Atomic clashesStereochemical errorsModel completenessAverage occupancy
5H5I_GDP_A_401 88% 43% 0.108 0.9841.07 1.13 2 100100%1
5XDT_GDP_A_401 99% 47% 0.059 0.991.17 0.87 2 100100%1
8HTB_GDP_A_401 98% 50% 0.066 0.9891.02 0.93 3 100100%1
6KVP_GDP_A_401 98% 48% 0.067 0.9880.99 1.02 3 300100%1
6YD1_GDP_A_401 97% 13% 0.071 0.9831.58 2.35 4 800100%1
5XDW_GDP_A_401 96% 37% 0.071 0.9811.17 1.31 2 400100%1
1TVK_GDP_B_1500 100% 23% 0.012 0.9992.28 0.95 3 280100%1
8QEG_GDP_A_401 100% 51% 0.031 0.9931.02 0.87 3 100100%1
8QEH_GDP_A_405 100% 55% 0.03 0.9930.89 0.85 1 100100%1
1RRG_GDP_A_183 100% 17% 0.036 0.9972.05 1.56 7 300100%1
2CXX_GDP_B_2401 100% 29% 0.031 0.9891.26 1.57 1 300100%1