Ligand validation:4Y28

LUT: (3R,3'R,6S)-4,5-DIDEHYDRO-5,6-DIHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL

LUT is a Ligand Of Interest in 4Y28 designated by the RCSB

	Best-fitted instance in this entry
	Other instances in this entry

	Best-fitted instance in this entry
	Best-fitted PDB instances with same target (top 5)

	Best-fitted instance in this entry
	Best-fitted PDB instances with different target (top 5)

Identifier	Ranking for goodness of fit	Ranking for geometry	Real space R factor	Real space correlation coefficient	RMSZ-bond-length	RMSZ-bond-angle	Outliers of bond length	Outliers of bond angle	Atomic clashes	Stereochemical errors	Model completeness	Average occupancy
4Y28_LUT_I_6018	60%	8%	0.148	0.933	2.46	2.21	1	18	18	1	100%	1
4Y28_LUT_4_4501	58%	8%	0.152	0.93	2.44	2.19	3	16	29	1	100%	1
4Y28_LUT_4_4502	55%	10%	0.156	0.926	2.38	1.95	3	15	39	1	100%	1
4Y28_LUT_1_1502	39%	8%	0.19	0.898	2.47	2.21	4	18	22	1	100%	1
4Y28_LUT_2_2501	36%	9%	0.204	0.899	2.43	2.11	1	14	28	1	100%	1
4Y28_LUT_3_3502	36%	8%	0.207	0.902	2.39	2.28	3	17	35	1	100%	1
4Y28_LUT_2_2502	31%	8%	0.217	0.886	2.47	2.1	3	16	39	1	100%	1
4Y28_LUT_4_4503	31%	7%	0.221	0.89	2.41	2.42	3	15	42	1	100%	1
4Y28_LUT_1_1501	29%	7%	0.228	0.888	2.5	2.31	4	14	34	1	100%	1
4Y28_LUT_3_3501	19%	8%	0.255	0.854	2.34	2.37	1	19	46	1	100%	1
4XK8_LUT_3_316	61%	39%	0.111	0.898	0.74	1.63	-	14	0	0	100%	1
4RKU_LUT_4_4502	39%	2%	0.157	0.864	2.55	3.83	4	26	58	1	100%	1
6ZXS_LUT_1_5004	12%	9%	0.342	0.869	2.38	2.05	1	15	9	1	100%	1
1RWT_LUT_J_9620	87%	36%	0.101	0.972	0.99	1.52	4	5	0	0	100%	1
4LCZ_LUT_C_302	72%	36%	0.153	0.978	0.82	1.69	1	11	6	0	100%	1
5L8R_LUT_1_501	69%	12%	0.126	0.94	2.39	1.69	1	10	7	0	100%	1
7DKZ_LUT_4_316	66%	0%	0.141	0.946	5.53	5.74	22	35	5	0	100%	1

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.