CDP: CYTIDINE-5'-DIPHOSPHATE

CDP is a Ligand Of Interest in 3ETM designated by the RCSB


Created with Raphaël 2.3.0WorseGeometryBetterWorseExperiment Data FittingBetter3ETM_CDP_A_201Click to see a 3Delectron density viewof this ligand instance
Created with Raphaël 2.3.0WorseGeometryBetterWorseExperiment Data FittingBetter3ETM_CDP_A_201Click to see a 3Delectron density viewof this ligand instance
Created with Raphaël 2.3.0WorseGeometryBetterWorseExperiment Data FittingBetter3ETM_CDP_A_201Click to see a 3Delectron density viewof this ligand instance
Created with Raphaël 2.3.0
Best-fitted instance in this entry
Created with Raphaël 2.3.0
Other instances in this entry
Created with Raphaël 2.3.0
Best-fitted instance in this entry
Created with Raphaël 2.3.0
Best-fitted PDB instances with same target (top 5)
Created with Raphaël 2.3.0
Best-fitted instance in this entry
Created with Raphaël 2.3.0
Best-fitted PDB instances with different target (top 5)
IdentifierRanking for goodness of fit Ranking for geometry Real space R factor Real space correlation coefficient RMSZ-bond-length RMSZ-bond-angleOutliers of bond length Outliers of bond angle Atomic clashesStereochemical errorsModel completenessAverage occupancy
3ETM_CDP_A_201 95% 34% 0.076 0.9790.93 1.67 - 500100%1
3ETM_CDP_B_201 92% 46% 0.082 0.9730.91 1.17 - 400100%1
3FC9_CDP_B_143 88% 51% 0.104 0.980.81 1.08 - 300100%1
6SDK_CDP_C_301 100% 5% 0.043 0.9873.72 1.58 12 600100%1
3BOS_CDP_B_300 100% 55% 0.046 0.9880.92 0.81 1 100100%1
8VHP_CDP_D_809 98% 52% 0.051 0.9750.89 0.96 - 220100%1
2VBU_CDP_A_1133 96% 45% 0.078 0.9890.89 1.22 - 300100%1
1ORR_CDP_B_1301 96% 34% 0.06 0.971.28 1.32 3 600100%1