1IRY
Solution structure of the hMTH1, a nucleotide pool sanitization enzyme
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 3D_15N-separated_NOESY | 1.7mM hMTH1 U-15N,13C; 50mM K-phosphate buffer, 20mM KCl, 0.1mM EDTA and 1mM DTT; 95% H2O, 5% D2O | 95% H2O/5% D2O | 70 | 6.9 | ambient | 303 | |
2 | 4D_13C/15N-separated_NOESY | 1.7mM hMTH1 U-15N,13C; 50mM K-phosphate buffer, 20mM KCl, 0.1mM EDTA and 1mM DTT; 95% H2O, 5% D2O | 95% H2O/5% D2O | 70 | 6.9 | ambient | 303 | |
3 | HNHA | 1.7mM hMTH1 U-15N,13C; 50mM K-phosphate buffer, 20mM KCl, 0.1mM EDTA and 1mM DTT; 95% H2O, 5% D2O | 95% H2O/5% D2O | 70 | 6.9 | ambient | 303 | |
4 | 4D_13C-separated_NOESY | 1.7mM hMTH1 U-15N,13C; 50mM K-phosphate buffer, 20mM KCl, 0.1mM EDTA and 1mM DTT; 99.8% D2O | 99.8% D2O | 70 | 6.9 | ambient | 303 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | DMX | 500 |
2 | Bruker | DRX | 800 |
NMR Refinement | ||
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Method | Details | Software |
simulated annealing | The structures are based on a total of 2312 restraints, 2043 are NOE-derived distance constraints, 177 dihedral angle restraints,92 distance restraints from hydrogen bonds detected through 3hJNC. | DYANA |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 30 |
Representative Model | 1 (lowest energy) |
Additional NMR Experimental Information | |
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Details | STEREOSPECIFIC ASSIGNMENTS OF THE METHYL GROUPS OF THE LEUCINE AND VALINE RESIDUES WERE ACHIEVED WITH 15% FRACTIONALLY 13C-LABELED hMTH1 DISSOLVED IN 99.8% D2O. |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | structure solution | DYANA | 1.5 | Guentert, P. |
2 | processing | NMRPipe | 1.8 | Delaglio, F. |
3 | collection | XwinNMR | 2.6 | Bruker |
4 | refinement | CNS | 1.0 | Brunger, A.T. |
5 | data analysis | NMRpipp | 4.2.4 | Garrett, D. |