7BSI | pdb_00007bsi

Epstein-Barr virus, one asymmetric unit structure of the icosahedral tegumented capsid

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A [auth m]	Herpes_capsid	e7bsim1	A: alpha bundles	X: Smallest capsid protein (SCP) (From Topology)	H: Smallest capsid protein (SCP) (From Topology)	T: Smallest capsid protein (SCP)	F: Herpes_capsid	ECOD (1.6)
B [auth Y]	Herpes_capsid	e7bsiY1	A: alpha bundles	X: Smallest capsid protein (SCP) (From Topology)	H: Smallest capsid protein (SCP) (From Topology)	T: Smallest capsid protein (SCP)	F: Herpes_capsid	ECOD (1.6)
BA [auth G]	Herpes_capsid	e7bsiG1	A: alpha bundles	X: Smallest capsid protein (SCP) (From Topology)	H: Smallest capsid protein (SCP) (From Topology)	T: Smallest capsid protein (SCP)	F: Herpes_capsid	ECOD (1.6)
C [auth Z]	Herpes_capsid	e7bsiZ1	A: alpha bundles	X: Smallest capsid protein (SCP) (From Topology)	H: Smallest capsid protein (SCP) (From Topology)	T: Smallest capsid protein (SCP)	F: Herpes_capsid	ECOD (1.6)
DA [auth H]	Herpes_capsid	e7bsiH1	A: alpha bundles	X: Smallest capsid protein (SCP) (From Topology)	H: Smallest capsid protein (SCP) (From Topology)	T: Smallest capsid protein (SCP)	F: Herpes_capsid	ECOD (1.6)
FA [auth I]	Herpes_capsid	e7bsiI1	A: alpha bundles	X: Smallest capsid protein (SCP) (From Topology)	H: Smallest capsid protein (SCP) (From Topology)	T: Smallest capsid protein (SCP)	F: Herpes_capsid	ECOD (1.6)
HA [auth J]	Herpes_capsid	e7bsiJ1	A: alpha bundles	X: Smallest capsid protein (SCP) (From Topology)	H: Smallest capsid protein (SCP) (From Topology)	T: Smallest capsid protein (SCP)	F: Herpes_capsid	ECOD (1.6)
JA [auth K]	Herpes_capsid	e7bsiK1	A: alpha bundles	X: Smallest capsid protein (SCP) (From Topology)	H: Smallest capsid protein (SCP) (From Topology)	T: Smallest capsid protein (SCP)	F: Herpes_capsid	ECOD (1.6)
LA [auth L]	Herpes_capsid	e7bsiL1	A: alpha bundles	X: Smallest capsid protein (SCP) (From Topology)	H: Smallest capsid protein (SCP) (From Topology)	T: Smallest capsid protein (SCP)	F: Herpes_capsid	ECOD (1.6)
M [auth P]	Herpes_capsid	e7bsiP1	A: alpha bundles	X: Smallest capsid protein (SCP) (From Topology)	H: Smallest capsid protein (SCP) (From Topology)	T: Smallest capsid protein (SCP)	F: Herpes_capsid	ECOD (1.6)
O [auth Q]	Herpes_capsid	e7bsiQ1	A: alpha bundles	X: Smallest capsid protein (SCP) (From Topology)	H: Smallest capsid protein (SCP) (From Topology)	T: Smallest capsid protein (SCP)	F: Herpes_capsid	ECOD (1.6)
OA [auth y]	Herpes_capsid	e7bsiy1	A: alpha bundles	X: Smallest capsid protein (SCP) (From Topology)	H: Smallest capsid protein (SCP) (From Topology)	T: Smallest capsid protein (SCP)	F: Herpes_capsid	ECOD (1.6)
Q [auth R]	Herpes_capsid	e7bsiR1	A: alpha bundles	X: Smallest capsid protein (SCP) (From Topology)	H: Smallest capsid protein (SCP) (From Topology)	T: Smallest capsid protein (SCP)	F: Herpes_capsid	ECOD (1.6)
S [auth 0]	Herpes_capsid	e7bsi01	A: alpha bundles	X: Smallest capsid protein (SCP) (From Topology)	H: Smallest capsid protein (SCP) (From Topology)	T: Smallest capsid protein (SCP)	F: Herpes_capsid	ECOD (1.6)
U [auth 1]	Herpes_capsid	e7bsi11	A: alpha bundles	X: Smallest capsid protein (SCP) (From Topology)	H: Smallest capsid protein (SCP) (From Topology)	T: Smallest capsid protein (SCP)	F: Herpes_capsid	ECOD (1.6)
W [auth X]	Herpes_capsid	e7bsiX1	A: alpha bundles	X: Smallest capsid protein (SCP) (From Topology)	H: Smallest capsid protein (SCP) (From Topology)	T: Smallest capsid protein (SCP)	F: Herpes_capsid	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A [auth m], B [auth Y], BA [auth G], C [auth Z], DA [auth H], A [auth m], B [auth Y], BA [auth G], C [auth Z], DA [auth H], FA [auth I], HA [auth J], JA [auth K], LA [auth L], M [auth P], O [auth Q], OA [auth y], Q [auth R], S [auth 0], U [auth 1], W [auth X]	PF01802	Herpesvirus VP23 like capsid protein (Herpes_V23)	Herpesvirus VP23 like capsid protein	-	Family
A [auth m], B [auth Y], BA [auth G], C [auth Z], DA [auth H], A [auth m], B [auth Y], BA [auth G], C [auth Z], DA [auth H], FA [auth I], HA [auth J], JA [auth K], LA [auth L], M [auth P], O [auth Q], OA [auth y], Q [auth R], S [auth 0], U [auth 1], W [auth X]	PF03122	Herpes virus major capsid protein (Herpes_MCP)	Herpes virus major capsid protein	-	Family
A [auth m], B [auth Y], BA [auth G], C [auth Z], DA [auth H], A [auth m], B [auth Y], BA [auth G], C [auth Z], DA [auth H], FA [auth I], HA [auth J], JA [auth K], LA [auth L], M [auth P], O [auth Q], OA [auth y], Q [auth R], S [auth 0], U [auth 1], W [auth X]	PF03327	Herpesvirus capsid shell protein VP19C (Herpes_VP19C)	Herpesvirus capsid shell protein VP19C	-	Family
CA [auth A], D [auth S], E [auth T], EA [auth B], GA [auth C], CA [auth A], D [auth S], E [auth T], EA [auth B], GA [auth C], I [auth l], IA [auth D], KA [auth E], MA [auth F], N [auth M], NA [auth x], P [auth N], R [auth O], T [auth U], V, X [auth k]	PF01802	Herpesvirus VP23 like capsid protein (Herpes_V23)	Herpesvirus VP23 like capsid protein	-	Family
CA [auth A], D [auth S], E [auth T], EA [auth B], GA [auth C], CA [auth A], D [auth S], E [auth T], EA [auth B], GA [auth C], I [auth l], IA [auth D], KA [auth E], MA [auth F], N [auth M], NA [auth x], P [auth N], R [auth O], T [auth U], V, X [auth k]	PF03122	Herpes virus major capsid protein (Herpes_MCP)	Herpes virus major capsid protein	-	Family
CA [auth A], D [auth S], E [auth T], EA [auth B], GA [auth C], CA [auth A], D [auth S], E [auth T], EA [auth B], GA [auth C], I [auth l], IA [auth D], KA [auth E], MA [auth F], N [auth M], NA [auth x], P [auth N], R [auth O], T [auth U], V, X [auth k]	PF03327	Herpesvirus capsid shell protein VP19C (Herpes_VP19C)	Herpesvirus capsid shell protein VP19C	-	Family
F [auth e], J [auth 5], PA [auth h], SA [auth a], Y [auth b]	PF03327	Herpesvirus capsid shell protein VP19C (Herpes_VP19C)	Herpesvirus capsid shell protein VP19C	-	Family
AA [auth d], G [auth f], H [auth g], K [auth 6], L [auth 7], AA [auth d], G [auth f], H [auth g], K [auth 6], L [auth 7], QA [auth i], RA [auth j], TA [auth 8], UA [auth 9], Z [auth c]	PF01802	Herpesvirus VP23 like capsid protein (Herpes_V23)	Herpesvirus VP23 like capsid protein	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth m], B [auth Y], BA [auth G], C [auth Z], DA [auth H], A [auth m], B [auth Y], BA [auth G], C [auth Z], DA [auth H], FA [auth I], HA [auth J], JA [auth K], LA [auth L], M [auth P], O [auth Q], OA [auth y], Q [auth R], S [auth 0], U [auth 1], W [auth X]	Small capsomere-interacting protein	-	viral process	viral capsid virion component host intracellular membrane-bounded organelle host cellular component host intracellular part cellular anatomical structure host cell part host intracellular region host cell nucleus host intracellular organelle
CA [auth A], D [auth S], E [auth T], EA [auth B], GA [auth C], CA [auth A], D [auth S], E [auth T], EA [auth B], GA [auth C], I [auth l], IA [auth D], KA [auth E], MA [auth F], N [auth M], NA [auth x], P [auth N], R [auth O], T [auth U], V, X [auth k]	Major capsid protein	structural molecule activity	-	host intracellular membrane-bounded organelle host cellular component host intracellular part cellular anatomical structure host cell part host intracellular region host cell nucleus host intracellular organelle viral capsid icosahedral viral capsid virion component T=16 icosahedral viral capsid
F [auth e], J [auth 5], PA [auth h], SA [auth a], Y [auth b]	Triplex capsid protein 1	DNA binding binding nucleic acid binding	virion assembly viral process viral capsid assembly viral life cycle	viral capsid virion component host intracellular membrane-bounded organelle host cellular component host intracellular part cellular anatomical structure host cell part host intracellular region host cell nucleus host intracellular organelle
AA [auth d], G [auth f], H [auth g], K [auth 6], L [auth 7], AA [auth d], G [auth f], H [auth g], K [auth 6], L [auth 7], QA [auth i], RA [auth j], TA [auth 8], UA [auth 9], Z [auth c]	Triplex capsid protein 2	structural molecule activity	-	viral capsid virion component host intracellular membrane-bounded organelle host cellular component host intracellular part cellular anatomical structure host cell part host intracellular region host cell nucleus host intracellular organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth m], B [auth Y], BA [auth G], C [auth Z], DA [auth H], A [auth m], B [auth Y], BA [auth G], C [auth Z], DA [auth H], FA [auth I], HA [auth J], JA [auth K], LA [auth L], M [auth P], O [auth Q], OA [auth y], Q [auth R], S [auth 0], U [auth 1], W [auth X]	IPR009299	Gammaherpesvirus capsid	Family
CA [auth A], D [auth S], E [auth T], EA [auth B], GA [auth C], CA [auth A], D [auth S], E [auth T], EA [auth B], GA [auth C], I [auth l], IA [auth D], KA [auth E], MA [auth F], N [auth M], NA [auth x], P [auth N], R [auth O], T [auth U], V, X [auth k]	IPR000912	Herpesvirus major capsid protein	Family
CA [auth A], D [auth S], E [auth T], EA [auth B], GA [auth C], CA [auth A], D [auth S], E [auth T], EA [auth B], GA [auth C], I [auth l], IA [auth D], KA [auth E], MA [auth F], N [auth M], NA [auth x], P [auth N], R [auth O], T [auth U], V, X [auth k]	IPR023233	Herpesvirus major capsid protein, upper domain superfamily	Homologous Superfamily
F [auth e], J [auth 5], PA [auth h], SA [auth a], Y [auth b]	IPR004999	Herpesvirus capsid shell protein 1	Family
AA [auth d], G [auth f], H [auth g], K [auth 6], L [auth 7], AA [auth d], G [auth f], H [auth g], K [auth 6], L [auth 7], QA [auth i], RA [auth j], TA [auth 8], UA [auth 9], Z [auth c]	IPR002690	Herpesvirus capsid protein 2	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.