5OY0
Structure of synechocystis photosystem I trimer at 2.5A resolution
External Resource: Annotation
- Domain Annotation: SCOP/SCOPe Classification
- Domain Annotation: SCOP2 Classification
- Domain Annotation: ECOD Classification
- Domain Annotation: CATH
- Protein Family Annotation
- Gene Ontology: Gene Product Annotation
- InterPro: Protein Family Classification
- Membrane Protein Annotation: OPM
- Membrane Protein Annotation: PDBTM
- Membrane Protein Annotation: MemProtMD
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Photosystem I subunits PsaA/PsaB | 8074454 | 3000850 | SCOP2B (2022-06-29) |
L [auth a] | SCOP2B Superfamily | Photosystem I subunits PsaA/PsaB | 8074454 | 3000850 | SCOP2B (2022-06-29) |
J [auth L] | SCOP2B Superfamily | Photosystem I reaction center subunit XI, PsaL | 8087170 | 3000870 | SCOP2B (2022-06-29) |
U [auth l] | SCOP2B Superfamily | Photosystem I reaction center subunit XI, PsaL | 8087170 | 3000870 | SCOP2B (2022-06-29) |
K [auth M] | SCOP2B Superfamily | Subunit XII of photosystem I reaction centre, PsaM | 8074450 | 3000829 | SCOP2B (2022-06-29) |
V [auth m] | SCOP2B Superfamily | Subunit XII of photosystem I reaction centre, PsaM | 8074450 | 3000829 | SCOP2B (2022-06-29) |
GA [auth 9] | SCOP2B Superfamily | Subunit XII of photosystem I reaction centre, PsaM | 8074450 | 3000829 | SCOP2B (2022-06-29) |
M [auth b] | SCOP2B Superfamily | Photosystem I subunits PsaA/PsaB | 8074462 | 3000850 | SCOP2B (2022-06-29) |
P [auth e] | SCOP2B Superfamily | Electron transport accessory proteins | 8044474 | 3000325 | SCOP2B (2022-06-29) |
W [auth 1] | SCOP2 Family | Photosystem I subunits PsaA/PsaB | 8074453 | 4002118 | SCOP2 (2022-06-29) |
W [auth 1] | SCOP2 Superfamily | Photosystem I subunits PsaA/PsaB | 8074454 | 3000850 | SCOP2 (2022-06-29) |
Z [auth 4] | SCOP2B Superfamily | Photosystem I subunit PsaD | 8074480 | 3000951 | SCOP2B (2022-06-29) |
CA [auth h] | SCOP2B Superfamily | Subunit VIII of photosystem I reaction centre, PsaI | 8074504 | 3000819 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Photosystem I subunits PsaA/PsaB | 8074462 | 3000850 | SCOP2B (2022-06-29) |
X [auth 2] | SCOP2B Superfamily | Photosystem I subunits PsaA/PsaB | 8074462 | 3000850 | SCOP2B (2022-06-29) |
FA [auth 0] | SCOP2 Family | Photosystem I reaction center subunit XI, PsaL | 8087169 | 4002135 | SCOP2 (2022-06-29) |
FA [auth 0] | SCOP2 Superfamily | Photosystem I reaction center subunit XI, PsaL | 8087170 | 3000870 | SCOP2 (2022-06-29) |
O [auth d] | SCOP2B Superfamily | Photosystem I subunit PsaD | 8074480 | 3000951 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | Photosystem I subunit PsaD | 8074480 | 3000951 | SCOP2B (2022-06-29) |
AA [auth 5] | SCOP2B Superfamily | Electron transport accessory proteins | 8044474 | 3000325 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | Electron transport accessory proteins | 8044474 | 3000325 | SCOP2B (2022-06-29) |
BA [auth 6] | SCOP2 Family | Subunit III of photosystem I reaction centre, PsaF | 8074437 | 4002091 | SCOP2 (2022-06-29) |
BA [auth 6] | SCOP2 Superfamily | Subunit III of photosystem I reaction centre, PsaF | 8074438 | 3000813 | SCOP2 (2022-06-29) |
F | SCOP2B Superfamily | Subunit III of photosystem I reaction centre, PsaF | 8074438 | 3000813 | SCOP2B (2022-06-29) |
Q [auth f] | SCOP2B Superfamily | Subunit III of photosystem I reaction centre, PsaF | 8074438 | 3000813 | SCOP2B (2022-06-29) |
G [auth I] | SCOP2B Superfamily | Subunit VIII of photosystem I reaction centre, PsaI | 8074504 | 3000819 | SCOP2B (2022-06-29) |
R [auth i] | SCOP2B Superfamily | Subunit VIII of photosystem I reaction centre, PsaI | 8074504 | 3000819 | SCOP2B (2022-06-29) |
DA [auth 7] | SCOP2B Superfamily | Subunit IX of photosystem I reaction centre, PsaJ | 8074512 | 3000824 | SCOP2B (2022-06-29) |
S [auth j] | SCOP2B Superfamily | Subunit IX of photosystem I reaction centre, PsaJ | 8074512 | 3000824 | SCOP2B (2022-06-29) |
H [auth J] | SCOP2B Superfamily | Subunit IX of photosystem I reaction centre, PsaJ | 8074512 | 3000824 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PsaA_PsaB_C | e5oy0A2 | A: alpha bundles | X: Bacterial photosystem II reaction centre L and M subunits-like (From Topology) | H: Bacterial photosystem II reaction centre L and M subunits-like (From Topology) | T: Bacterial photosystem II reaction centre L and M subunits-like | F: PsaA_PsaB_C | ECOD (1.6) |
A | PsaA_PsaB_N | e5oy0A1 | A: alpha bundles | X: Photosystem II antenna protein-like (From Topology) | H: Photosystem II antenna protein-like (From Topology) | T: Photosystem II antenna protein-like | F: PsaA_PsaB_N | ECOD (1.6) |
L [auth a] | PsaA_PsaB_C | e5oy0a1 | A: alpha bundles | X: Bacterial photosystem II reaction centre L and M subunits-like (From Topology) | H: Bacterial photosystem II reaction centre L and M subunits-like (From Topology) | T: Bacterial photosystem II reaction centre L and M subunits-like | F: PsaA_PsaB_C | ECOD (1.6) |
L [auth a] | PsaA_PsaB_N | e5oy0a2 | A: alpha bundles | X: Photosystem II antenna protein-like (From Topology) | H: Photosystem II antenna protein-like (From Topology) | T: Photosystem II antenna protein-like | F: PsaA_PsaB_N | ECOD (1.6) |
J [auth L] | PsaL | e5oy0L1 | A: alpha bundles | X: Photosystem I reaction center subunit XI, PsaL (From Topology) | H: Photosystem I reaction center subunit XI, PsaL (From Topology) | T: Photosystem I reaction center subunit XI, PsaL | F: PsaL | ECOD (1.6) |
U [auth l] | PsaL | e5oy0l1 | A: alpha bundles | X: Photosystem I reaction center subunit XI, PsaL (From Topology) | H: Photosystem I reaction center subunit XI, PsaL (From Topology) | T: Photosystem I reaction center subunit XI, PsaL | F: PsaL | ECOD (1.6) |
K [auth M] | PsaM | e5oy0M1 | A: extended segments | X: Subunit XII of photosystem I reaction centre, PsaM (From Topology) | H: Subunit XII of photosystem I reaction centre, PsaM (From Topology) | T: Subunit XII of photosystem I reaction centre, PsaM | F: PsaM | ECOD (1.6) |
V [auth m] | PsaM | e5oy0m1 | A: extended segments | X: Subunit XII of photosystem I reaction centre, PsaM (From Topology) | H: Subunit XII of photosystem I reaction centre, PsaM (From Topology) | T: Subunit XII of photosystem I reaction centre, PsaM | F: PsaM | ECOD (1.6) |
GA [auth 9] | PsaM | e5oy091 | A: extended segments | X: Subunit XII of photosystem I reaction centre, PsaM (From Topology) | H: Subunit XII of photosystem I reaction centre, PsaM (From Topology) | T: Subunit XII of photosystem I reaction centre, PsaM | F: PsaM | ECOD (1.6) |
M [auth b] | PsaA_PsaB_C | e5oy0b1 | A: alpha bundles | X: Bacterial photosystem II reaction centre L and M subunits-like (From Topology) | H: Bacterial photosystem II reaction centre L and M subunits-like (From Topology) | T: Bacterial photosystem II reaction centre L and M subunits-like | F: PsaA_PsaB_C | ECOD (1.6) |
M [auth b] | PsaA_PsaB_N | e5oy0b2 | A: alpha bundles | X: Photosystem II antenna protein-like (From Topology) | H: Photosystem II antenna protein-like (From Topology) | T: Photosystem II antenna protein-like | F: PsaA_PsaB_N | ECOD (1.6) |
N [auth c] | Fer4_21_1 | e5oy0c1 | A: a+b two layers | X: 4Fe-4S ferredoxin (From Topology) | H: 4Fe-4S ferredoxin (From Topology) | T: 4Fe-4S ferredoxin | F: Fer4_21_1 | ECOD (1.6) |
P [auth e] | PSI_PsaE | e5oy0e1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PSI_PsaE | ECOD (1.6) |
T [auth k] | PSI_PSAK | e5oy0k1 | A: alpha bundles | X: Photosystem I reaction center subunit X, PsaK (From Topology) | H: Photosystem I reaction center subunit X, PsaK (From Topology) | T: Photosystem I reaction center subunit X, PsaK | F: PSI_PSAK | ECOD (1.6) |
W [auth 1] | PsaA_PsaB_C | e5oy011 | A: alpha bundles | X: Bacterial photosystem II reaction centre L and M subunits-like (From Topology) | H: Bacterial photosystem II reaction centre L and M subunits-like (From Topology) | T: Bacterial photosystem II reaction centre L and M subunits-like | F: PsaA_PsaB_C | ECOD (1.6) |
W [auth 1] | PsaA_PsaB_N | e5oy012 | A: alpha bundles | X: Photosystem II antenna protein-like (From Topology) | H: Photosystem II antenna protein-like (From Topology) | T: Photosystem II antenna protein-like | F: PsaA_PsaB_N | ECOD (1.6) |
Z [auth 4] | PsaD | e5oy041 | A: a+b two layers | X: Photosystem I subunit PsaD (From Topology) | H: Photosystem I subunit PsaD (From Topology) | T: Photosystem I subunit PsaD | F: PsaD | ECOD (1.6) |
CA [auth h] | PSI_8 | e5oy0h1 | A: extended segments | X: Subunit VIII of photosystem I reaction centre, PsaI (From Topology) | H: Subunit VIII of photosystem I reaction centre, PsaI (From Topology) | T: Subunit VIII of photosystem I reaction centre, PsaI | F: PSI_8 | ECOD (1.6) |
EA [auth 8] | PSI_PSAK | e5oy081 | A: alpha bundles | X: Photosystem I reaction center subunit X, PsaK (From Topology) | H: Photosystem I reaction center subunit X, PsaK (From Topology) | T: Photosystem I reaction center subunit X, PsaK | F: PSI_PSAK | ECOD (1.6) |
B | PsaA_PsaB_C | e5oy0B2 | A: alpha bundles | X: Bacterial photosystem II reaction centre L and M subunits-like (From Topology) | H: Bacterial photosystem II reaction centre L and M subunits-like (From Topology) | T: Bacterial photosystem II reaction centre L and M subunits-like | F: PsaA_PsaB_C | ECOD (1.6) |
B | PsaA_PsaB_N | e5oy0B1 | A: alpha bundles | X: Photosystem II antenna protein-like (From Topology) | H: Photosystem II antenna protein-like (From Topology) | T: Photosystem II antenna protein-like | F: PsaA_PsaB_N | ECOD (1.6) |
X [auth 2] | PsaA_PsaB_C | e5oy022 | A: alpha bundles | X: Bacterial photosystem II reaction centre L and M subunits-like (From Topology) | H: Bacterial photosystem II reaction centre L and M subunits-like (From Topology) | T: Bacterial photosystem II reaction centre L and M subunits-like | F: PsaA_PsaB_C | ECOD (1.6) |
X [auth 2] | PsaA_PsaB_N | e5oy021 | A: alpha bundles | X: Photosystem II antenna protein-like (From Topology) | H: Photosystem II antenna protein-like (From Topology) | T: Photosystem II antenna protein-like | F: PsaA_PsaB_N | ECOD (1.6) |
FA [auth 0] | PsaL | e5oy001 | A: alpha bundles | X: Photosystem I reaction center subunit XI, PsaL (From Topology) | H: Photosystem I reaction center subunit XI, PsaL (From Topology) | T: Photosystem I reaction center subunit XI, PsaL | F: PsaL | ECOD (1.6) |
C | Fer4_21_1 | e5oy0C1 | A: a+b two layers | X: 4Fe-4S ferredoxin (From Topology) | H: 4Fe-4S ferredoxin (From Topology) | T: 4Fe-4S ferredoxin | F: Fer4_21_1 | ECOD (1.6) |
Y [auth 3] | Fer4_21_1 | e5oy031 | A: a+b two layers | X: 4Fe-4S ferredoxin (From Topology) | H: 4Fe-4S ferredoxin (From Topology) | T: 4Fe-4S ferredoxin | F: Fer4_21_1 | ECOD (1.6) |
O [auth d] | PsaD | e5oy0d1 | A: a+b two layers | X: Photosystem I subunit PsaD (From Topology) | H: Photosystem I subunit PsaD (From Topology) | T: Photosystem I subunit PsaD | F: PsaD | ECOD (1.6) |
D | PsaD | e5oy0D1 | A: a+b two layers | X: Photosystem I subunit PsaD (From Topology) | H: Photosystem I subunit PsaD (From Topology) | T: Photosystem I subunit PsaD | F: PsaD | ECOD (1.6) |
AA [auth 5] | PSI_PsaE | e5oy051 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PSI_PsaE | ECOD (1.6) |
E | PSI_PsaE | e5oy0E1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PSI_PsaE | ECOD (1.6) |
BA [auth 6] | PSI_PsaF | e5oy061 | A: extended segments | X: Subunit III of photosystem I reaction centre, PsaF (From Topology) | H: Subunit III of photosystem I reaction centre, PsaF (From Topology) | T: Subunit III of photosystem I reaction centre, PsaF | F: PSI_PsaF | ECOD (1.6) |
F | PSI_PsaF | e5oy0F1 | A: extended segments | X: Subunit III of photosystem I reaction centre, PsaF (From Topology) | H: Subunit III of photosystem I reaction centre, PsaF (From Topology) | T: Subunit III of photosystem I reaction centre, PsaF | F: PSI_PsaF | ECOD (1.6) |
Q [auth f] | PSI_PsaF | e5oy0f1 | A: extended segments | X: Subunit III of photosystem I reaction centre, PsaF (From Topology) | H: Subunit III of photosystem I reaction centre, PsaF (From Topology) | T: Subunit III of photosystem I reaction centre, PsaF | F: PSI_PsaF | ECOD (1.6) |
G [auth I] | PSI_8 | e5oy0I1 | A: extended segments | X: Subunit VIII of photosystem I reaction centre, PsaI (From Topology) | H: Subunit VIII of photosystem I reaction centre, PsaI (From Topology) | T: Subunit VIII of photosystem I reaction centre, PsaI | F: PSI_8 | ECOD (1.6) |
R [auth i] | PSI_8 | e5oy0i1 | A: extended segments | X: Subunit VIII of photosystem I reaction centre, PsaI (From Topology) | H: Subunit VIII of photosystem I reaction centre, PsaI (From Topology) | T: Subunit VIII of photosystem I reaction centre, PsaI | F: PSI_8 | ECOD (1.6) |
DA [auth 7] | PSI_PsaJ | e5oy071 | A: extended segments | X: Subunit IX of photosystem I reaction centre, PsaJ (From Topology) | H: Subunit IX of photosystem I reaction centre, PsaJ (From Topology) | T: Subunit IX of photosystem I reaction centre, PsaJ | F: PSI_PsaJ | ECOD (1.6) |
S [auth j] | PSI_PsaJ | e5oy0j1 | A: extended segments | X: Subunit IX of photosystem I reaction centre, PsaJ (From Topology) | H: Subunit IX of photosystem I reaction centre, PsaJ (From Topology) | T: Subunit IX of photosystem I reaction centre, PsaJ | F: PSI_PsaJ | ECOD (1.6) |
H [auth J] | PSI_PsaJ | e5oy0J1 | A: extended segments | X: Subunit IX of photosystem I reaction centre, PsaJ (From Topology) | H: Subunit IX of photosystem I reaction centre, PsaJ (From Topology) | T: Subunit IX of photosystem I reaction centre, PsaJ | F: PSI_PsaJ | ECOD (1.6) |
I [auth K] | PSI_PSAK | e5oy0K1 | A: alpha bundles | X: Photosystem I reaction center subunit X, PsaK (From Topology) | H: Photosystem I reaction center subunit X, PsaK (From Topology) | T: Photosystem I reaction center subunit X, PsaK | F: PSI_PSAK | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A, L [auth a] | PF00223 | Photosystem I psaA/psaB protein (PsaA_PsaB) | Photosystem I psaA/psaB protein | - | Family |
J [auth L], U [auth l] | PF02605 | Photosystem I reaction centre subunit XI (PsaL) | Photosystem I reaction centre subunit XI | - | Family |
GA [auth 9], K [auth M], V [auth m] | PF07465 | Photosystem I protein M (PsaM) (PsaM) | Photosystem I protein M (PsaM) | - | Family |
W [auth 1] | PF00223 | Photosystem I psaA/psaB protein (PsaA_PsaB) | Photosystem I psaA/psaB protein | - | Family |
Z [auth 4] | PF02531 | PsaD (PsaD) | PsaD | - | Family |
EA [auth 8] | PF01241 | Photosystem I psaG / psaK (PSI_PSAK) | Photosystem I psaG / psaK | - | Family |
B, X [auth 2] | PF00223 | Photosystem I psaA/psaB protein (PsaA_PsaB) | Photosystem I psaA/psaB protein | - | Family |
FA [auth 0] | PF02605 | Photosystem I reaction centre subunit XI (PsaL) | Photosystem I reaction centre subunit XI | - | Family |
C, Y [auth 3] | PF12838 | 4Fe-4S dicluster domain (Fer4_7) | 4Fe-4S dicluster domain | Superfamily includes proteins containing domains which bind to iron-sulfur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Domain contai ... | Domain |
D, O [auth d] | PF02531 | PsaD (PsaD) | PsaD | - | Family |
AA [auth 5], E | PF02427 | Photosystem I reaction centre subunit IV / PsaE (PSI_PsaE) | Photosystem I reaction centre subunit IV / PsaE | PsaE is a 69 amino acid polypeptide from photosystem I present on the stromal side of the thylakoid membrane [1]. The structure is comprised of a well-defined five-stranded beta-sheet similar to SH3 domains [1]. | Domain |
BA [auth 6], F, Q [auth f] | PF02507 | Photosystem I reaction centre subunit III (PSI_PsaF) | Photosystem I reaction centre subunit III | - | Family |
G [auth I], R [auth i] | PF00796 | Photosystem I reaction centre subunit VIII (PSI_8) | Photosystem I reaction centre subunit VIII | - | Family |
DA [auth 7], H [auth J], S [auth j] | PF01701 | Photosystem I reaction centre subunit IX / PsaJ (PSI_PsaJ) | Photosystem I reaction centre subunit IX / PsaJ | - | Family |
I [auth K] | PF01241 | Photosystem I psaG / psaK (PSI_PSAK) | Photosystem I psaG / psaK | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Membrane Protein Annotation: OPM OPM Database Homepage
Chains | External Link | Type | Class | Superfamily | Family |
---|---|---|---|---|---|
OPM | Transmembrane | Alpha-helical polytopic | Photosystems | Photosystem I |
Membrane Protein Annotation: PDBTM PDBTM Database Homepage
Chains | External Link | Comment |
---|---|---|
PDBTM | Annotated as membrane protein by PDBTM |
Membrane Protein Annotation: MemProtMD MemProtMD Database Homepage
Chains | External Link | Comment |
---|---|---|
MemProtMD | Annotated as membrane protein by MemProtMD |