Crystal structure of the heteromolecular chaperone, AscE-AscG, from the type III secretion system in Aeromonas hydrophila
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Type III secretion system needle-like | 8053888 | 3000649 | SCOP2B (2022-06-29) |
C [auth B] | SCOP2B Superfamily | Type III secretion system needle-like | 8053888 | 3000649 | SCOP2B (2022-06-29) |
B [auth C] | SCOP2 Family | YscG-like | 8044952 | 4004220 | SCOP2 (2022-06-29) |
B [auth C] | SCOP2 Superfamily | TPR-like | 8053886 | 3001345 | SCOP2 (2022-06-29) |
D | SCOP2B Superfamily | TPR-like | 8053886 | 3001345 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | T3SS_needle_E | e3ph0A1 | A: alpha bundles | X: Type III secretion protein YscE (From Topology) | H: Type III secretion protein YscE (From Topology) | T: Type III secretion protein YscE | F: T3SS_needle_E | ECOD (1.6) |
C [auth B] | T3SS_needle_E | e3ph0B1 | A: alpha bundles | X: Type III secretion protein YscE (From Topology) | H: Type III secretion protein YscE (From Topology) | T: Type III secretion protein YscE | F: T3SS_needle_E | ECOD (1.6) |
B [auth C] | Type_III_YscG | e3ph0C1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: Type_III_YscG | ECOD (1.6) |
D | Type_III_YscG | e3ph0D1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: Type_III_YscG | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 1.20.5.420 | Mainly Alpha | Up-down Bundle | Single alpha-helices involved in coiled-coils or other helix-helix interfaces | Immunoglobulin FC, subunit C | CATH (4.3.0) |
C [auth B] | 1.20.5.420 | Mainly Alpha | Up-down Bundle | Single alpha-helices involved in coiled-coils or other helix-helix interfaces | Immunoglobulin FC, subunit C | CATH (4.3.0) |
B [auth C] | 1.25.40.1040 | Mainly Alpha | Alpha Horseshoe | Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat | CATH (4.3.0) | |
D | 1.25.40.1040 | Mainly Alpha | Alpha Horseshoe | Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A, C [auth B] | PF08988 | Type III secretion system, cytoplasmic E component of needle (T3SS_needle_E) | Type III secretion system, cytoplasmic E component of needle | - | Family |
B [auth C], D | PF09477 | Bacterial type III secretion system chaperone protein (Type_III_YscG) | Bacterial type III secretion system chaperone protein | - | Repeat |
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
A, C [auth B] | IPR012671 | Type III export protein PscE/YscE | Family |
B [auth C], D | IPR011990 | Tetratricopeptide-like helical domain superfamily | Homologous Superfamily |
B [auth C], D | IPR013348 | Type 3 secretion system chaperone YscG/PscG | Family |