3MHS | pdb_00003mhs

Structure of the SAGA Ubp8/Sgf11/Sus1/Sgf73 DUB module bound to ubiquitin aldehyde


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Bd3mhsb_ All alpha proteins Sus1-like Sus1-like Sus1-like Sus1 brewer's yeast,lager beer yeast,yeast (Saccharomyces cerevisiae ) [TaxId: 4932 ], SCOPe (2.08)
Dd3mhsd_ Alpha and beta proteins (a+b) beta-Grasp (ubiquitin-like) Ubiquitin-like Ubiquitin-related Ubiquitin human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
BSCOP2 FamilySUS1/ENY2-like 8051633 4007442 SCOP2 (2022-06-29)
BSCOP2 SuperfamilySUS1/ENY2-like 8052552 3002127 SCOP2 (2022-06-29)
DSCOP2B SuperfamilyUbiquitin-like 8043829 3000157 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
AUCHe3mhsA3 A: a+b complex topologyX: Cysteine proteinases-likeH: Cysteine proteinases (From Topology)T: Cysteine proteinasesF: UCHECOD (1.6)
Azf-UBPe3mhsA4 A: few secondary structure elementsX: RING/U-box-likeH: RING/U-box-likeT: RING/U-boxF: zf-UBPECOD (1.6)
BEnY2e3mhsB1 A: alpha duplicates or obligate multimersX: YheA/YmcA-likeH: Protein SUS1 (From Topology)T: Protein SUS1F: EnY2ECOD (1.6)
CSgf11_1e3mhsC1 A: few secondary structure elementsX: beta-beta-alpha zinc fingersH: beta-beta-alpha zinc fingers (From Topology)T: beta-beta-alpha zinc fingersF: Sgf11_1ECOD (1.6)
Dubiquitin_1e3mhsD1 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Ubiquitin-likeF: ubiquitin_1ECOD (1.6)
EKOG4140e3mhsE1 A: few secondary structure elementsX: beta-beta-alpha zinc fingersH: beta-beta-alpha zinc fingers (From Topology)T: beta-beta-alpha zinc fingersF: KOG4140ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF02148Zn-finger in ubiquitin-hydrolases and other protein (zf-UBP)Zn-finger in ubiquitin-hydrolases and other proteinDomain
PF00443Ubiquitin carboxyl-terminal hydrolase (UCH)Ubiquitin carboxyl-terminal hydrolase- Family
PF10163Transcription factor e(y)2 (EnY2)Transcription factor e(y)2- Family
PF18519SAGA-associated factor 11 N-terminal domain (Sgf11_N)SAGA-associated factor 11 N-terminal domainThe SAGA (Spt-Ada-Gcn5-Acetyltransferase) transcriptional co-activator is a protein complex that regulates inducible yeast genes by performing multiple functions including acetylating core histones, recruiting the RNA polymerase II preinitiation comp ...Domain
PF08209Sgf11 (transcriptional regulation protein) (Sgf11)Sgf11 (transcriptional regulation protein)- Family
PF00240Ubiquitin family (ubiquitin)Ubiquitin familyThis family contains a number of ubiquitin-like proteins: SUMO (smt3 homologue) (see Swiss:Q02724), Nedd8 (see Swiss:P29595), Elongin B (see Swiss:Q15370), Rub1 (see Swiss:Q9SHE7), and Parkin (see Swiss:O60260). A number of them are thought to carry ...Domain
PF18508Zinc finger domain (zf_C2H2_13)Zinc finger domainThe SAGA (Spt-Ada-Gcn5-acetyltransferase) complex performs multiple functions in transcription activation including deubiquitinating histone H2B, which is mediated by a subcomplex called the deubiquitinating module (DUBm). The yeast DUBm comprises a ...Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Ubiquitin carboxyl-terminal hydrolase 8
Protein SUS1
SAGA-associated factor 11
Ubiquitin
SAGA-associated factor 73