3CF2
Structure of P97/vcp in complex with ADP/AMP-PNP
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
B | SCOP2B Superfamily | ADC-like | 8032511 | 3001132 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | RecA-like P-loop NTPases | 8032512 | 3002019 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | DNA polymerases epsilon, N-terminal domain (Dpoe2NT)-like | 8104156 | 3002834 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Cdc48 domain 2-like | 8032514 | 3000725 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | DNA polymerases epsilon, N-terminal domain (Dpoe2NT)-like | 8104156 | 3002834 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | ADC-like | 8032511 | 3001132 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | RecA-like P-loop NTPases | 8032512 | 3002019 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | Cdc48 domain 2-like | 8032514 | 3000725 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | ADC-like | 8032511 | 3001132 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | RecA-like P-loop NTPases | 8032512 | 3002019 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | DNA polymerases epsilon, N-terminal domain (Dpoe2NT)-like | 8104156 | 3002834 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | Cdc48 domain 2-like | 8032514 | 3000725 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Cdc48 domain 2-like | 8032514 | 3000725 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | ADC-like | 8032511 | 3001132 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | RecA-like P-loop NTPases | 8032512 | 3002019 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | DNA polymerases epsilon, N-terminal domain (Dpoe2NT)-like | 8104156 | 3002834 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
B | CDC48_N | e3cf2B8 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: double psi | F: CDC48_N | ECOD (1.6) |
B | CDC48 | e3cf2B7 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: CDC48 | ECOD (1.6) |
B | Vps4_C_C | e3cf2B6 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: Vps4_C_C | ECOD (1.6) |
B | CDC48_2 | e3cf2B4 | A: a+b two layers | X: Cdc48 domain 2-like (From Topology) | H: Cdc48 domain 2-like (From Topology) | T: Cdc48 domain 2-like | F: CDC48_2 | ECOD (1.6) |
B | Sigma54_activat | e3cf2B5 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: Sigma54_activat | ECOD (1.6) |
C | CDC48_N | e3cf2C8 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: double psi | F: CDC48_N | ECOD (1.6) |
C | CDC48 | e3cf2C7 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: CDC48 | ECOD (1.6) |
C | Vps4_C_C | e3cf2C6 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: Vps4_C_C | ECOD (1.6) |
C | CDC48_2 | e3cf2C4 | A: a+b two layers | X: Cdc48 domain 2-like (From Topology) | H: Cdc48 domain 2-like (From Topology) | T: Cdc48 domain 2-like | F: CDC48_2 | ECOD (1.6) |
C | Sigma54_activat | e3cf2C5 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: Sigma54_activat | ECOD (1.6) |
D | CDC48_N | e3cf2D8 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: double psi | F: CDC48_N | ECOD (1.6) |
D | CDC48 | e3cf2D7 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: CDC48 | ECOD (1.6) |
D | Vps4_C_C | e3cf2D6 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: Vps4_C_C | ECOD (1.6) |
D | CDC48_2 | e3cf2D4 | A: a+b two layers | X: Cdc48 domain 2-like (From Topology) | H: Cdc48 domain 2-like (From Topology) | T: Cdc48 domain 2-like | F: CDC48_2 | ECOD (1.6) |
D | Sigma54_activat | e3cf2D5 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: Sigma54_activat | ECOD (1.6) |
A | CDC48_N | e3cf2A8 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: double psi | F: CDC48_N | ECOD (1.6) |
A | CDC48 | e3cf2A7 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: CDC48 | ECOD (1.6) |
A | Vps4_C_C | e3cf2A6 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: Vps4_C_C | ECOD (1.6) |
A | CDC48_2 | e3cf2A4 | A: a+b two layers | X: Cdc48 domain 2-like (From Topology) | H: Cdc48 domain 2-like (From Topology) | T: Cdc48 domain 2-like | F: CDC48_2 | ECOD (1.6) |
A | Sigma54_activat | e3cf2A5 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: Sigma54_activat | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF02933 | Cell division protein 48 (CDC48), domain 2 (CDC48_2) | Cell division protein 48 (CDC48), domain 2 | This domain has a double psi-beta barrel fold and includes VCP-like ATPase and N-ethylmaleimide sensitive fusion protein N-terminal domains. Both the VAT and NSF N-terminal functional domains consist of two structural domains of which this is at t ... | Domain | |
PF17862 | AAA+ lid domain (AAA_lid_3) | AAA+ lid domain | This entry represents the alpha helical AAA+ lid domain that is found to the C-terminus of AAA domains. | Domain | |
PF02359 | Cell division protein 48 (CDC48), N-terminal domain (CDC48_N) | Cell division protein 48 (CDC48), N-terminal domain | This domain has a double psi-beta barrel fold and includes VCP-like ATPase and N-ethylmaleimide sensitive fusion protein N-terminal domains. Both the VAT and NSF N-terminal functional domains consist of two structural domains of which this is at t ... | Domain | |
PF00004 | ATPase family associated with various cellular activities (AAA) (AAA) | ATPase family associated with various cellular activities (AAA) | AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes [2]. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR003959 | ATPase, AAA-type, core | Domain | |
IPR027417 | P-loop containing nucleoside triphosphate hydrolase | Homologous Superfamily | |
IPR029067 | CDC48 domain 2-like superfamily | Homologous Superfamily | |
IPR005938 | AAA ATPase, CDC48 family | Family | |
IPR003338 | CDC48, N-terminal subdomain | Domain | |
IPR004201 | CDC48, domain 2 | Domain | |
IPR009010 | Aspartate decarboxylase-like domain superfamily | Homologous Superfamily | |
IPR003593 | AAA+ ATPase domain | Domain | |
IPR041569 | AAA ATPase, AAA+ lid domain | Domain | |
IPR050168 | AAA ATPase domain-containing protein | Family | |
IPR003960 | ATPase, AAA-type, conserved site | Conserved Site |