2OKU | pdb_00002oku

The crystal structure of the acyl-CoA dehydrogenase family protein from Porphyromonas gingivalis

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d2okua1	All alpha proteins	N-cbl like	PG0775 C-terminal domain-like	PG0775 C-terminal domain-like	Uncharacterized protein PG0775	(Porphyromonas gingivalis W83 ) [TaxId: 242619 ],	SCOPe (2.08)
B	d2okub_	All alpha proteins	N-cbl like	PG0775 C-terminal domain-like	PG0775 C-terminal domain-like	Uncharacterized protein PG0775	(Porphyromonas gingivalis W83 ) [TaxId: 242619 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	PG0775 C-terminal domain-like	8022724	4001376	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	PG0775 C-terminal domain-like	8035104	3001415	SCOP2 (2022-06-29)
B	SCOP2B Superfamily	PG0775 C-terminal domain-like	8035104	3001415	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	AcylCoA_dehyd_C	e2okuA1	A: alpha bundles	X: N-cbl like	H: PG0775 C-terminal domain-like (From Topology)	T: PG0775 C-terminal domain-like	F: AcylCoA_dehyd_C	ECOD (1.6)
B	AcylCoA_dehyd_C	e2okuB1	A: alpha bundles	X: N-cbl like	H: PG0775 C-terminal domain-like (From Topology)	T: PG0775 C-terminal domain-like	F: AcylCoA_dehyd_C	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	1.20.120.470	Mainly Alpha	Up-down Bundle	Four Helix Bundle (Hemerythrin (Met), subunit A)	Acyl-CoA dehydrogenase, C-terminal domain	CATH (4.3.0)
B	1.20.120.470	Mainly Alpha	Up-down Bundle	Four Helix Bundle (Hemerythrin (Met), subunit A)	Acyl-CoA dehydrogenase, C-terminal domain	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF12186	Acyl-CoA dehydrogenase C terminal (AcylCoA_dehyd_C)	Acyl-CoA dehydrogenase C terminal	This domain family is found in bacteria, and is approximately 110 amino acids in length. The family is found in association with Pfam:PF02770, Pfam:PF00441, Pfam:PF02771. There is a conserved ARRL sequence motif. The C terminal domain is an alpha hel ...	This domain family is found in bacteria, and is approximately 110 amino acids in length. The family is found in association with Pfam:PF02770, Pfam:PF00441, Pfam:PF02771. There is a conserved ARRL sequence motif. The C terminal domain is an alpha helical domain. The flavin ring of Acyl-CoA dehydrogenase is buried in the crevice between the two alpha helical domains and the beta-sheet domain of one subunit, and the adenosine pyrophosphate moiety is stretched into the subunit junction of a neighbouring subunit, composed of two C terminal domains.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	Acyl-CoA dehydrogenase family protein	oxidoreductase activity, acting on the CH-CH group of donors, with a flavin as acceptor oxidoreductase activity acyl-CoA dehydrogenase activity oxidoreductase activity, acting on the CH-CH group of donors catalytic activity flavin adenine dinucleotide binding binding nucleoside phosphate binding ion binding anion binding nucleotide binding heterocyclic compound binding small molecule binding	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR006091	Acyl-CoA oxidase/dehydrogenase, middle domain	Domain
A, B	IPR034188	Broad-specificity linear acyl-CoA dehydrogenase FadE5-like	Family
A, B	IPR006089	Acyl-CoA dehydrogenase, conserved site	Conserved Site
A, B	IPR036250	Acyl-CoA dehydrogenase-like, C-terminal	Homologous Superfamily
A, B	IPR013786	Acyl-CoA dehydrogenase/oxidase, N-terminal	Domain
A, B	IPR037069	Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily	Homologous Superfamily
A, B	IPR009100	Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily	Homologous Superfamily
A, B	IPR046373	Acyl-CoA oxidase/dehydrogenase, middle domain superfamily	Homologous Superfamily
A, B	IPR009075	Acyl-CoA dehydrogenase/oxidase, C-terminal	Domain
A, B	IPR020964	Acyl-CoA dehydrogenase, C-terminal	Domain
A, B	IPR036797	Acyl-CoA dehydrogenase, C-terminal domain superfamily	Homologous Superfamily
A, B	IPR052166	Diverse substrate specificity acyl-CoA dehydrogenase	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.