1ZA7 | pdb_00001za7

The crystal structure of salt stable cowpea cholorotic mottle virus at 2.7 angstroms resolution.

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d1za7a_	All beta proteins	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Positive stranded ssRNA viruses	Bromoviridae-like VP	automated matches	(Cowpea chlorotic mottle virus ) [TaxId: 12303 ],	SCOPe (2.08)
B	d1za7b_	All beta proteins	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Positive stranded ssRNA viruses	Bromoviridae-like VP	automated matches	(Cowpea chlorotic mottle virus ) [TaxId: 12303 ],	SCOPe (2.08)
C	d1za7c_	All beta proteins	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Positive stranded ssRNA viruses	Bromoviridae-like VP	automated matches	(Cowpea chlorotic mottle virus ) [TaxId: 12303 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	Positive stranded ssRNA viruses-like	8040790	3000918	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Positive stranded ssRNA viruses-like	8040790	3000918	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Positive stranded ssRNA viruses-like	8040790	3000918	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Bromo_coat	e1za7A1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Bromo_coat	ECOD (1.6)
B	Bromo_coat	e1za7B1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Bromo_coat	ECOD (1.6)
C	Bromo_coat	e1za7C1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Bromo_coat	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	2.60.120.220	Mainly Beta	Sandwich	Jelly Rolls	Satellite virus coat domain	CATH (4.3.0)
B	2.60.120.220	Mainly Beta	Sandwich	Jelly Rolls	Satellite virus coat domain	CATH (4.3.0)
C	2.60.120.220	Mainly Beta	Sandwich	Jelly Rolls	Satellite virus coat domain	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C	PF01318	Bromovirus coat protein (Bromo_coat)	Bromovirus coat protein		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C	Coat protein	structural molecule activity RNA binding binding nucleic acid binding	-	viral capsid T=3 icosahedral viral capsid icosahedral viral capsid virion component protein-containing complex ribonucleoprotein complex viral nucleocapsid

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C	IPR002009	Bromovirus coat protein	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.