1TKG | pdb_00001tkg

Crystal structure of the editing domain of threonyl-tRNA synthetase complexed with an analog of seryladenylate


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2B SuperfamilyThrRS/AlaRS editing domain-like 8042501 3001504 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyTGS-like 8042499 3000423 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
ATGSe1tkgA2 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Ubiquitin-likeF: TGSECOD (1.6)
AtRNA_SADe1tkgA1 A: a+b two layersX: LuxS, MPP, ThrRS/AlaRS common domainH: LuxS, MPP, ThrRS/AlaRS common domainT: ThrRS/AlaRS editing domainF: tRNA_SADECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A3.10.20.30 Alpha Beta Roll Ubiquitin-like (UB roll) Beta-grasp domainCATH (4.3.0)
A3.30.980.10 Alpha Beta 2-Layer Sandwich Threonyl-tRNA Synthetase Chain A, domain 2CATH (4.3.0)
A3.30.54.20 Alpha Beta 2-Layer Sandwich Replication Terminator Protein Chain A, domain 2CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF02824TGS domain (TGS)TGS domainThe TGS domain is named after ThrRS, GTPase, and SpoT [1]. Interestingly, TGS domain was detected also at the amino terminus of the uridine kinase from the spirochaete Treponema pallidum (but not any other organism, including the related spirochaete ...Domain
PF07973Threonyl and Alanyl tRNA synthetase second additional domain (tRNA_SAD)Threonyl and Alanyl tRNA synthetase second additional domainThe catalytically active from of threonyl/alanyl tRNA synthetase is a dimer. Within the tRNA synthetase class II dimer, the bound tRNA interacts with both monomers making specific interactions with the catalytic domain, the C-terminal domain, and thi ...Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Threonyl-tRNA synthetase