1RKT | pdb_00001rkt

Crystal structure of yfiR, a putative transcriptional regulator from Bacillus subtilis


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2 FamilyTetracyclin repressor-like 8056404 4000333 SCOP2 (2022-06-29)
ASCOP2 SuperfamilyTetR C-terminal domain-like 8056406 3000086 SCOP2 (2022-06-29)
ASCOP2 SuperfamilyHomeodomain-like 8056405 3000001 SCOP2 (2022-06-29)
BSCOP2B SuperfamilyHomeodomain-like 8056405 3000001 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyTetR C-terminal domain-like 8056406 3000086 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
ATetR_Ne1rktA1 A: alpha arraysX: HTHH: HTHT: tri-helicalF: TetR_NECOD (1.6)
ATetR_C_6_likee1rktA2 A: alpha bundlesX: Tetracyclin repressor-like, C-terminal domain (From Topology)H: Tetracyclin repressor-like, C-terminal domain (From Topology)T: Tetracyclin repressor-like, C-terminal domainF: TetR_C_6_likeECOD (1.6)
BTetR_Ne1rktB1 A: alpha arraysX: HTHH: HTHT: tri-helicalF: TetR_NECOD (1.6)
BTetR_C_6_likee1rktB2 A: alpha bundlesX: Tetracyclin repressor-like, C-terminal domain (From Topology)H: Tetracyclin repressor-like, C-terminal domain (From Topology)T: Tetracyclin repressor-like, C-terminal domainF: TetR_C_6_likeECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B
PF00440Bacterial regulatory proteins, tetR family (TetR_N)Bacterial regulatory proteins, tetR familyDomain
A, B
PF17922Tetracyclin repressor-like, C-terminal domain (TetR_C_17)Tetracyclin repressor-like, C-terminal domainTetR family regulators are involved in the transcriptional control of multidrug efflux pumps, pathways for the biosynthesis of antibiotics, response to osmotic stress and toxic chemicals, control of catabolic pathways, differentiation processes, and ...Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B
protein yfiR -