1Q9X
Crystal structure of Enterobacteria phage RB69 gp43 DNA polymerase complexed with tetrahydrofuran containing DNA
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
J [auth B] | SCOP2B Superfamily | Nucleotide cyclase/DNA polymerase palm domain-like | 8033949 | 3001272 | SCOP2B (2022-06-29) |
J [auth B] | SCOP2B Superfamily | Nucleotide cyclase/DNA polymerase palm domain-like | 8033949 | 3001272 | SCOP2B (2022-06-29) |
J [auth B] | SCOP2B Superfamily | Ribonuclease H-like | 8033947 | 3000143 | SCOP2B (2022-06-29) |
I [auth A] | SCOP2B Superfamily | Nucleotide cyclase/DNA polymerase palm domain-like | 8033949 | 3001272 | SCOP2B (2022-06-29) |
I [auth A] | SCOP2B Superfamily | Ribonuclease H-like | 8033947 | 3000143 | SCOP2B (2022-06-29) |
I [auth A] | SCOP2B Superfamily | Nucleotide cyclase/DNA polymerase palm domain-like | 8033949 | 3001272 | SCOP2B (2022-06-29) |
K [auth C] | SCOP2B Superfamily | Nucleotide cyclase/DNA polymerase palm domain-like | 8033949 | 3001272 | SCOP2B (2022-06-29) |
K [auth C] | SCOP2B Superfamily | Ribonuclease H-like | 8033947 | 3000143 | SCOP2B (2022-06-29) |
K [auth C] | SCOP2B Superfamily | Nucleotide cyclase/DNA polymerase palm domain-like | 8033949 | 3001272 | SCOP2B (2022-06-29) |
L [auth D] | SCOP2B Superfamily | Ribonuclease H-like | 8033947 | 3000143 | SCOP2B (2022-06-29) |
L [auth D] | SCOP2B Superfamily | Nucleotide cyclase/DNA polymerase palm domain-like | 8033949 | 3001272 | SCOP2B (2022-06-29) |
L [auth D] | SCOP2B Superfamily | Nucleotide cyclase/DNA polymerase palm domain-like | 8033949 | 3001272 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
J [auth B] | 43_2nd | e1q9xB2 | A: alpha bundles | X: thumb domain in bacteriophage RB69-like DNA polymerase I (From Topology) | H: thumb domain in bacteriophage RB69-like DNA polymerase I (From Topology) | T: thumb domain in bacteriophage RB69-like DNA polymerase I | F: 43_2nd | ECOD (1.6) |
J [auth B] | 43_1st | e1q9xB1 | A: alpha bundles | X: fingers domain in bacteriophage RB69-like DNA polymerase I (From Topology) | H: fingers domain in bacteriophage RB69-like DNA polymerase I (From Topology) | T: fingers domain in bacteriophage RB69-like DNA polymerase I | F: 43_1st | ECOD (1.6) |
J [auth B] | DNA_pol_B_1st | e1q9xB3 | A: a+b two layers | X: Alpha-beta plaits | H: Adenylyl and guanylyl cyclase catalytic domain-like | T: Adenylyl and guanylyl cyclase catalytic domain-like | F: DNA_pol_B_1st | ECOD (1.6) |
J [auth B] | DNA_pol_B_exo1_3rd | e1q9xB4 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: DNA_pol_B_exo1_3rd | ECOD (1.6) |
I [auth A] | 43_2nd | e1q9xA2 | A: alpha bundles | X: thumb domain in bacteriophage RB69-like DNA polymerase I (From Topology) | H: thumb domain in bacteriophage RB69-like DNA polymerase I (From Topology) | T: thumb domain in bacteriophage RB69-like DNA polymerase I | F: 43_2nd | ECOD (1.6) |
I [auth A] | 43_1st | e1q9xA1 | A: alpha bundles | X: fingers domain in bacteriophage RB69-like DNA polymerase I (From Topology) | H: fingers domain in bacteriophage RB69-like DNA polymerase I (From Topology) | T: fingers domain in bacteriophage RB69-like DNA polymerase I | F: 43_1st | ECOD (1.6) |
I [auth A] | DNA_pol_B_1st | e1q9xA3 | A: a+b two layers | X: Alpha-beta plaits | H: Adenylyl and guanylyl cyclase catalytic domain-like | T: Adenylyl and guanylyl cyclase catalytic domain-like | F: DNA_pol_B_1st | ECOD (1.6) |
I [auth A] | DNA_pol_B_exo1_3rd | e1q9xA4 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: DNA_pol_B_exo1_3rd | ECOD (1.6) |
K [auth C] | 43_2nd | e1q9xC2 | A: alpha bundles | X: thumb domain in bacteriophage RB69-like DNA polymerase I (From Topology) | H: thumb domain in bacteriophage RB69-like DNA polymerase I (From Topology) | T: thumb domain in bacteriophage RB69-like DNA polymerase I | F: 43_2nd | ECOD (1.6) |
K [auth C] | 43_1st | e1q9xC1 | A: alpha bundles | X: fingers domain in bacteriophage RB69-like DNA polymerase I (From Topology) | H: fingers domain in bacteriophage RB69-like DNA polymerase I (From Topology) | T: fingers domain in bacteriophage RB69-like DNA polymerase I | F: 43_1st | ECOD (1.6) |
K [auth C] | DNA_pol_B_1st | e1q9xC3 | A: a+b two layers | X: Alpha-beta plaits | H: Adenylyl and guanylyl cyclase catalytic domain-like | T: Adenylyl and guanylyl cyclase catalytic domain-like | F: DNA_pol_B_1st | ECOD (1.6) |
K [auth C] | DNA_pol_B_exo1_3rd | e1q9xC4 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: DNA_pol_B_exo1_3rd | ECOD (1.6) |
L [auth D] | 43_2nd | e1q9xD2 | A: alpha bundles | X: thumb domain in bacteriophage RB69-like DNA polymerase I (From Topology) | H: thumb domain in bacteriophage RB69-like DNA polymerase I (From Topology) | T: thumb domain in bacteriophage RB69-like DNA polymerase I | F: 43_2nd | ECOD (1.6) |
L [auth D] | 43_1st | e1q9xD1 | A: alpha bundles | X: fingers domain in bacteriophage RB69-like DNA polymerase I (From Topology) | H: fingers domain in bacteriophage RB69-like DNA polymerase I (From Topology) | T: fingers domain in bacteriophage RB69-like DNA polymerase I | F: 43_1st | ECOD (1.6) |
L [auth D] | DNA_pol_B_1st | e1q9xD3 | A: a+b two layers | X: Alpha-beta plaits | H: Adenylyl and guanylyl cyclase catalytic domain-like | T: Adenylyl and guanylyl cyclase catalytic domain-like | F: DNA_pol_B_1st | ECOD (1.6) |
L [auth D] | DNA_pol_B_exo1_3rd | e1q9xD4 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: DNA_pol_B_exo1_3rd | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
I [auth A], J [auth B], K [auth C], L [auth D] | PF00136 | DNA polymerase family B (DNA_pol_B) | DNA polymerase family B | - | Family |
I [auth A], J [auth B], K [auth C], L [auth D] | PF03104 | DNA polymerase family B, exonuclease domain (DNA_pol_B_exo1) | DNA polymerase family B, exonuclease domain | - | Family |