8WS4

Crystal structure of the CYP199A4 mutant F182A in complex with 4-methoxybenzoic acid


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.53 Å
  • R-Value Free: 0.176 
  • R-Value Work: 0.155 
  • R-Value Observed: 0.155 

Starting Model: experimental
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Literature

Crucial gating residues govern the enhancement of peroxygenase activity in an engineered cytochrome P450 O -demethylase.

Zhao, P.Jiang, Y.Wang, Q.Chen, J.Yao, F.Cong, Z.

(2024) Chem Sci 15: 8062-8070

  • DOI: https://doi.org/10.1039/d4sc02418d
  • Primary Citation of Related Structures:  
    8WS4

  • PubMed Abstract: 

    P450-catalyzed O -demethylation reactions have recently attracted particular attention because of their potential applications in lignin bioconversion. We recently enabled the peroxygenase activity of CYP199A4, a NADH-dependent cytochrome P450 monooxygenase from Rhodopseudomonas palustris , by engineering a hydrogen peroxide (H 2 O 2 ) tunnel. In this report, we reveal by crystallography and molecule dynamics simulations that key residues located at one of the water tunnels in CYP199A4 play a crucial gating role, which enhances the peroxygenase activity by regulating the inflow of H 2 O 2 . These results provide a more complete understanding of the mechanism by which monooxygenase is converted into peroxygenase activity through the H 2 O 2 tunnel engineering (HTE) strategy. Furthermore, a library of engineered CYP199A4 peroxygenases was constructed to explore their application potentials for O -demethylation of various methoxy-substituted benzoic acid derivatives. The engineered CYP199A4 peroxygenases showed good functional group tolerance and preferential O -demethylation at the meta - or para -position, indicating potential O -demethylation of H- and G-type lignin monomers. This work reveals the feasibility of the HTE strategy in creating P450 peroxygenase from a mechanistic perspective, laying the foundation for developing an effective P450 O -demethylase applicable in lignin bioconversion.


  • Organizational Affiliation

    CAS Key Laboratory of Biofuels, Shandong Provincial Key Laboratory of Synthetic Biology Qingdao Institute of Bioenergy and Bioprocess Technology, Chinese Academy of Sciences Qingdao Shandong P. R. China [email protected].


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Cytochrome P450420Rhodopseudomonas palustris HaA2Mutation(s): 0 
UniProt
Find proteins for Q2IU02 (Rhodopseudomonas palustris (strain HaA2))
Explore Q2IU02 
Go to UniProtKB:  Q2IU02
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ2IU02
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.53 Å
  • R-Value Free: 0.176 
  • R-Value Work: 0.155 
  • R-Value Observed: 0.155 
  • Space Group: P 1 21 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 44.674α = 90
b = 51.829β = 93.15
c = 78.959γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
Aimlessdata scaling
xia2data reduction
PHENIXphasing

Structure Validation

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Ligand Structure Quality Assessment 


Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Natural Science Foundation of China (NSFC)China21977104
National Natural Science Foundation of China (NSFC)China32371311
National Natural Science Foundation of China (NSFC)China22207112

Revision History  (Full details and data files)

  • Version 1.0: 2024-10-16
    Type: Initial release