Download MendeleyCrystal structure of an Oxidoreductase (short chain dehydrogenase/reductase family) from Brucella ovis in complex with a partially ordered NAD
Abendroth, J., Dranow, D.M., Lorimer, D.D., Edwards, T.E.To be published.
5EL0 | pdb_00005el0
Crystal structure of an Oxidoreductase (short chain dehydrogenase/reductase family) from Brucella ovis in complex with a partially ordered NAD
- PDB DOI: https://doi.org/10.2210/pdb5EL0/pdb
- Classification: OXIDOREDUCTASE
- Organism(s): Brucella ovis ATCC 25840
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2015-11-04 Released: 2015-12-02
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.85 Å
- R-Value Free: 0.194 (Depositor), 0.190 (DCC)
- R-Value Work: 0.163 (Depositor), 0.160 (DCC)
- R-Value Observed: 0.166 (Depositor)
Starting Model: experimental
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This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Oxidoreductase, short chain dehydrogenase/reductase family | 276 | Brucella ovis ATCC 25840 | Mutation(s): 0 Gene Names: BOV_0113 |  | |
UniProt | |||||
Find proteins for A0A0H3AQ75 (Brucella ovis (strain ATCC 25840 / 63/290 / NCTC 10512)) Explore A0A0H3AQ75 Go to UniProtKB: A0A0H3AQ75 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | A0A0H3AQ75 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| NAP Query on NAP | B [auth A] | NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE C21 H28 N7 O17 P3 XJLXINKUBYWONI-NNYOXOHSSA-N |  | ||
| CA Query on CA | C [auth A] | CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.85 Å
- R-Value Free: 0.194 (Depositor), 0.190 (DCC)
- R-Value Work: 0.163 (Depositor), 0.160 (DCC)
- R-Value Observed: 0.166 (Depositor)
Diffraction Data: https://doi.org/10.18430/M35EL0
Space Group: I 2 2 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 53.35 | α = 90 |
| b = 99.93 | β = 90 |
| c = 100.48 | γ = 90 |
| Software Name | Purpose |
|---|---|
| XDS | data reduction |
| XSCALE | data scaling |
| PHENIX | phasing |
| PHENIX | refinement |
| Coot | model building |
| PDB_EXTRACT | data extraction |
Entry History
Deposition Data
- Released Date: 2015-12-02 Deposition Author(s): Seattle Structural Genomics Center for Infectious Disease (SSGCID)
Revision History (Full details and data files)
- Version 1.0: 2015-12-02
Type: Initial release - Version 1.1: 2023-09-27
Changes: Data collection, Database references, Derived calculations, Refinement description
