Download MendeleyCrystal Structure of Frutalin from Artocarpus incisa in complex with galactose
Vieira Neto, A.E., Pereira, H.M., Moreno, F.B.M.B., Moreira, A.C.O.M., Lobo, M.D.P., Sousa, F.D., Grangeiro, T.B., Moreira, R.A.To be published.
5BN6
Crystal Structure of Frutalin from Artocarpus incisa in complex with galactose
- PDB DOI: https://doi.org/10.2210/pdb5BN6/pdb
- Classification: SUGAR BINDING PROTEIN
- Organism(s): Artocarpus heterophyllus
- Mutation(s): No
- Deposited: 2015-05-25 Released: 2016-06-08
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.65 Å
- R-Value Free: 0.197
- R-Value Work: 0.164
- R-Value Observed: 0.166
Starting Model: experimental
View more details
This is version 1.3 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by: Sequence | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Jacalin | A, C [auth B], E [auth C], G [auth D] | 19 | Artocarpus heterophyllus | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for Q38720 (Artocarpus heterophyllus) Explore Q38720 Go to UniProtKB: Q38720 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q38720 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Jacalin | B [auth E], D [auth F], F [auth G], H | 138 | Artocarpus heterophyllus | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for Q38720 (Artocarpus heterophyllus) Explore Q38720 Go to UniProtKB: Q38720 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q38720 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| GAL Query on GAL | I [auth E], J [auth F], K [auth G], L [auth H] | beta-D-galactopyranose C6 H12 O6 WQZGKKKJIJFFOK-FPRJBGLDSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.65 Å
- R-Value Free: 0.197
- R-Value Work: 0.164
- R-Value Observed: 0.166
- Space Group: I 1 2 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 75.926 | α = 90 |
| b = 74.606 | β = 96.79 |
| c = 119.042 | γ = 90 |
| Software Name | Purpose |
|---|---|
| d*TREK | data scaling |
| XDS | data reduction |
| Aimless | data scaling |
| PHASER | phasing |
| PHENIX | refinement |
| PDB_EXTRACT | data extraction |
Entry History
Deposition Data
- Released Date: 2016-06-08 Deposition Author(s): Vieira Neto, A.E., Pereira, H.M., Moreno, F.B.M.B., Moreira, A.C.O.M., Lobo, M.D.P., Sousa, F.D., Grangeiro, T.B., Moreira, R.A.
Revision History (Full details and data files)
- Version 1.0: 2016-06-08
Type: Initial release - Version 1.1: 2017-11-22
Changes: Derived calculations, Refinement description - Version 1.2: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Data collection, Derived calculations, Structure summary - Version 1.3: 2023-09-27
Changes: Data collection, Database references, Refinement description, Structure summary
