Download MendeleyCrystal Structure of a Gly128Met mutant of the toxoplasma CDPK, TGME49_101440
Wernimont, A.K., Artz, J.D., El Bakkouri, M., Schapira, M., Edwards, A.M., Arrowsmith, C.H., Bountra, C., Hui, R., Amani, M.To be published.
4IEB
Crystal Structure of a Gly128Met mutant of the toxoplasma CDPK, TGME49_101440
- PDB DOI: https://doi.org/10.2210/pdb4IEB/pdb
- Classification: TRANSFERASE
- Organism(s): Toxoplasma gondii
- Expression System: Escherichia coli
- Mutation(s): Yes
- Deposited: 2012-12-13 Released: 2013-12-25
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.05 Å
- R-Value Free: 0.217
- R-Value Work: 0.174
- R-Value Observed: 0.176
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Calmodulin-domain protein kinase 1 | 515 | Toxoplasma gondii | Mutation(s): 1 Gene Names: CDPK1, TGGT1_059880, TGME49_101440, TGVEG_042030 EC: 2.7.11.17 (PDB Primary Data), 2.7.11.1 (UniProt) |  | |
UniProt | |||||
Find proteins for Q9BJF5 (Toxoplasma gondii) Explore Q9BJF5 Go to UniProtKB: Q9BJF5 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q9BJF5 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| ANP Query on ANP | F [auth A] | PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER C10 H17 N6 O12 P3 PVKSNHVPLWYQGJ-KQYNXXCUSA-N |  | ||
| CA Query on CA | B [auth A], C [auth A], D [auth A], E [auth A] | CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.05 Å
- R-Value Free: 0.217
- R-Value Work: 0.174
- R-Value Observed: 0.176
- Space Group: P 21 21 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 50.174 | α = 90 |
| b = 96.684 | β = 90 |
| c = 102.36 | γ = 90 |
| Software Name | Purpose |
|---|---|
| DENZO | data reduction |
| SCALEPACK | data scaling |
| PHASER | phasing |
| REFMAC | refinement |
| PDB_EXTRACT | data extraction |
| HKL-2000 | data collection |
Entry History
Deposition Data
- Released Date: 2013-12-25 Deposition Author(s): Wernimont, A.K., Artz, J.D., El Bakkouri, M., Schapira, M., Edwards, A.M., Arrowsmith, C.H., Bountra, C., Hui, R., Amani, M., Structural Genomics Consortium (SGC)
Revision History (Full details and data files)
- Version 1.0: 2013-12-25
Type: Initial release - Version 1.1: 2017-11-15
Changes: Refinement description - Version 1.2: 2024-10-16
Changes: Data collection, Database references, Derived calculations, Structure summary
