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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Keywords HAS EXACT PHRASE "VIRAL PROTEIN"

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Search Summary

This query matches 11,203 Structures.

Refinements

Structure Determination Methodology

experimental (11,203)

Scientific Name of Source Organism

	Severe acute respiratory syndrome coronavirus 2 (3,896)
	Homo sapiens (2,319)
	Human immunodeficiency virus 1 (925)
	Mus musculus (349)
	synthetic construct (311)
	Influenza A virus (248)
	Zika virus (241)
	Chikungunya virus (151)
	Severe acute respiratory syndrome-related coronavirus (126)
	Tequatrovirus T4 (125)

More...

Taxonomy

	Riboviria (9,410)
	Eukaryota (3,115)
	Duplodnaviria (887)
	Varidnaviria (433)
	other sequences (318)
	Monodnaviria (195)
	Bacteria (182)
	Riboviria (RNA viruses and viroids) (98)
	Viruses incertae sedis (48)
	unclassified bacterial viruses (25)

More...

Experimental Method

	X-RAY DIFFRACTION (7,423)
	ELECTRON MICROSCOPY (3,365)
	SOLUTION NMR (387)
	SOLID-STATE NMR (23)
	ELECTRON CRYSTALLOGRAPHY (6)
	SOLUTION SCATTERING (4)
	NEUTRON DIFFRACTION (3)
	INFRARED SPECTROSCOPY (2)
	FIBER DIFFRACTION (1)

Polymer Entity Type

	Protein (11,202)
	RNA (395)
	DNA (149)
	NA-hybrid (10)

Refinement Resolution (Å)

	0.5 - 1.0 (36)
	1.0 - 1.5 (1,091)
	1.5 - 2.0 (2,221)
	2.0 - 2.5 (2,014)
	2.5 - 3.0 (1,925)
	3.0 - 3.5 (1,754)
	3.5 - 4.0 (963)
	4.0 - 4.5 (366)
	> 4.5 (422)

Release Date

	1985 - 1989 (2)
	1990 - 1994 (19)
	1995 - 1999 (102)
	2000 - 2004 (245)
	2005 - 2009 (556)
	2010 - 2014 (1,120)
	2015 - 2019 (1,688)
	2020 - 2024 (7,042)
	2025 - 2029 (429)

Enzyme Classification Name

	Hydrolases (3,522)
	Transferases (724)
	Isomerases (42)
	Lyases (31)
	Oxidoreductases (5)
	Ligases (1)

Membrane Protein Annotation

	OPM (154)
	mpstruc (49)
	MemProtMD (51)
	PDBTM (40)

Symmetry Type

	Asymmetric (5,802)
	Cyclic (5,249)
	Dihedral (213)
	Icosahedral (52)
	Helical (47)
	Tetrahedral (29)
	Octahedral (1)

SCOP Classification

	All beta proteins (1,570)
	Artifacts (809)
	Coiled coil proteins (476)
	Alpha and beta proteins (a/b) (423)
	All alpha proteins (258)
	Alpha and beta proteins (a+b) (329)
	Multi-domain proteins (alpha and beta) (90)
	Small proteins (91)
	Membrane and cell surface proteins and peptides (51)
	Peptides (60)

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AllSelected

1 to 25 of 11,203 Structures

Page 1 of 449

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3AL4 \| pdb_00003al4	Download File View File

Crystal structure of the swine-origin A (H1N1)-2009 influenza A virus hemagglutinin (HA) reveals similar antigenicity to that of the 1918 pandemic virus

Zhang, W., Qi, J.X., Shi, Y., Li, Q., Yan, J.H., Gao, G.F.

(2010) Protein Cell 1: 459-467

Released	2010-08-04
Method	X-RAY DIFFRACTION 2.872 Å
Organisms	Influenza A virus (A/California/04/2009(H1N1))
Macromolecule	Hemagglutinin (protein)
Unique Ligands	NAG
Unique branched monosaccharides	BMA, NAG

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1A1R \| pdb_00001a1r	Download File View File

HCV NS3 PROTEASE DOMAIN:NS4A PEPTIDE COMPLEX

Kim, J.L., Morgenstern, K.A., Lin, C., Fox, T., Dwyer, M.D., Landro, J.A., Chambers, S.P., Markland, W., Lepre, C.A., O'Malley, E.T., Harbeson, S.L., Rice, C.M., Murcko, M.A., Caron, P.R., Thomson, J.A.

(1996) Cell 87: 343-355

Released	1998-06-17
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Hepacivirus hominis
Macromolecule	NS3 PROTEIN (protein) NS4A PROTEIN (protein)
Unique Ligands	ZN

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1A43 \| pdb_00001a43	Download File View File

STRUCTURE OF THE HIV-1 CAPSID PROTEIN DIMERIZATION DOMAIN AT 2.6A RESOLUTION

Worthylake, D.K., Wang, H., Yoo, S., Sundquist, W.I., Hill, C.P.

(1999) Acta Crystallogr D Biol Crystallogr 55: 85-92

Released	1999-02-09
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Human immunodeficiency virus 1
Macromolecule	HIV-1 CAPSID (protein)

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1A6S \| pdb_00001a6s	Download File View File

M-DOMAIN FROM GAG POLYPROTEIN OF ROUS SARCOMA VIRUS, NMR, 20 STRUCTURES

Mcdonnell, J.M., Fushman, D., Cahill, S.M., Zhou, W., Wolven, A., Wilson, C.B., Nelle, T.D., Resh, M.D., Wills, J., Cowburn, D.

(1998) J Mol Biology 279: 921-928

Released	1998-10-14
Method	SOLUTION NMR
Organisms	Rous sarcoma virus - Prague C
Macromolecule	GAG POLYPROTEIN (protein)

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1A8O \| pdb_00001a8o	Download File View File

HIV CAPSID C-TERMINAL DOMAIN

Gamble, T.R., Yoo, S., Vajdos, F.F., Von Schwedler, U.K., Worthylake, D.K., Wang, H., Mccutcheon, J.P., Sundquist, W.I., Hill, C.P.

(1997) Science 278: 849-853

Released	1998-10-14
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Human immunodeficiency virus 1
Macromolecule	HIV CAPSID (protein)

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1AAF \| pdb_00001aaf	Download File View File

NUCLEOCAPSID ZINC FINGERS DETECTED IN RETROVIRUSES: EXAFS STUDIES ON INTACT VIRUSES AND THE SOLUTION-STATE STRUCTURE OF THE NUCLEOCAPSID PROTEIN FROM HIV-1

Summers, M.F., Henderson, L.E., Chance, M.R., Bess Junior, J.W., South, T.L., Blake, P.R., Sagi, I., Perez-Alvarado, G., Sowder, R.C., Hare, D.R., Arthur, L.O.

(1992) Protein Sci 1: 563-574

Released	1994-01-31
Method	SOLUTION NMR
Organisms	HIV-1 M:B_MN
Macromolecule	HIV-1 NUCLEOCAPSID PROTEIN (protein)
Unique Ligands	ZN

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1AHS \| pdb_00001ahs	Download File View File

CRYSTAL STRUCTURE OF THE TOP DOMAIN OF AFRICAN HORSE SICKNESS VIRUS VP7

Stuart, D., Gouet, P.

(1996) J Virol 70: 3797-3806

Released	1996-11-08
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Orbivirus alphaequi
Macromolecule	AFRICAN HORSE SICKNESS VIRUS (SEROTYPE 4) VP7 (protein)

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1AIK \| pdb_00001aik	Download File View File

HIV GP41 CORE STRUCTURE

Chan, D.C., Fass, D., Berger, J.M., Kim, P.S.

(1997) Cell 89: 263-273

Released	1997-06-16
Method	X-RAY DIFFRACTION 2 Å
Organisms	HIV-1 M:B_HXB2R
Macromolecule	HIV-1 GP41 GLYCOPROTEIN (protein)

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1AOL \| pdb_00001aol	Download File View File

FRIEND MURINE LEUKEMIA VIRUS RECEPTOR-BINDING DOMAIN

Fass, D., Davey, R.A., Hamson, C.A., Kim, P.S., Cunningham, J.M., Berger, J.M.

(1997) Science 277: 1662-1666

Released	1997-10-15
Method	X-RAY DIFFRACTION 2 Å
Organisms	Friend murine leukemia virus
Macromolecule	GP70 (protein)
Unique Ligands	NAG, ZN

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1AUM \| pdb_00001aum	Download File View File

HIV CAPSID C-TERMINAL DOMAIN (CAC146)

Hill, C.P., Gamble, T.R., Yoo, S., Vajdos, F.F., Von Schwedler, U.K., Worthylake, D.K., Wang, H., Mccutcheon, J.P., Sundquist, W.I.

(1997) Science 278: 849-853

Released	1998-01-14
Method	X-RAY DIFFRACTION 3 Å
Organisms	Human immunodeficiency virus 1
Macromolecule	HIV CAPSID (protein)

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1B03 \| pdb_00001b03	Download File View File

SOLUTION STRUCTURE OF THE ANTIBODY-BOUND HIV-1IIIB V3 PEPTIDE

Tugarinov, V., Zvi, A., Levy, R., Anglister, J.

(1999) Nat Struct Biol 6: 331-335

Released	1998-11-25
Method	SOLUTION NMR
Organisms	Human immunodeficiency virus type 1
Macromolecule	PROTEIN (P1053 PEPTIDE) (protein)

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1BAJ \| pdb_00001baj	Download File View File

HIV-1 CAPSID PROTEIN C-TERMINAL FRAGMENT PLUS GAG P2 DOMAIN

Worthylake, D.K., Wang, H., Yoo, S., Sundquist, W.I., Hill, C.P.

(1999) Acta Crystallogr D Biol Crystallogr 55: 85-92

Released	1998-10-14
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Human immunodeficiency virus 1
Macromolecule	GAG POLYPROTEIN (protein)

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1BFW \| pdb_00001bfw	Download File View File

RETRO-INVERSO ANALOGUE OF THE G-H LOOP OF VP1 IN FOOT-AND-MOUTH-DISEASE (FMD) VIRUS, NMR, 10 STRUCTURES

Petit, M.C., Benkirane, N., Guichard, G., Phan Chan Du, A., Cung, M.T., Briand, J.P., Muller, S.

(1999) J Biological Chem 274: 3686-3692

Released	1999-01-13
Method	SOLUTION NMR
Macromolecule	VP1 PROTEIN (protein)

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1BM4 \| pdb_00001bm4	Download File View File

MOMLV CAPSID PROTEIN MAJOR HOMOLOGY REGION PEPTIDE ANALOG

Clish, C.B., Peyton, D.H., Barklis, E.

(1998) Eur J Biochem 257: 69-77

Released	1998-08-05
Method	SOLUTION NMR
Organisms	Moloney murine leukemia virus (isolate Shinnick)
Macromolecule	PROTEIN (MOLONEY MURINE LEUKEMIA VIRUS CAPSID) (protein)

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1BMX \| pdb_00001bmx	Download File View File

HIV-1 CAPSID PROTEIN MAJOR HOMOLOGY REGION PEPTIDE ANALOG, NMR, 8 STRUCTURES

Clish, C.B., Peyton, D.H., Barklis, E.

(1998) Eur J Biochem 257: 69-77

Released	1999-01-06
Method	SOLUTION NMR
Organisms	Human immunodeficiency virus 1
Macromolecule	HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 CAPSID (protein)

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1BVP \| pdb_00001bvp	Download File View File

THE CRYSTAL STRUCTURE OF BLUETONGUE VIRUS VP7

Stuart, D., Grimes, J.

(1995) Nature 373: 167-170

Released	1995-06-03
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Bluetongue virus (serotype 10 / American isolate)
Macromolecule	BLUETONGUE VIRUS COAT PROTEIN VP7 (protein)

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1C1A \| pdb_00001c1a	Download File View File

CRYSTAL STRUCTURE OF RSV TWO-DOMAIN INTEGRASE

Yang, Z.-N., Mueser, T.C., Bushman, F.D., Hyde, C.C.

(2000) J Mol Biology 296: 535-548

Released	2000-03-01
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Rous sarcoma virus
Macromolecule	RSV INTEGRASE (protein)

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1C5E \| pdb_00001c5e	Download File View File

BACTERIOPHAGE LAMBDA HEAD PROTEIN D

Yang, F., Forrer, P., Dauter, Z., Pluckthun, A., Wlodawer, A.

(2000) Nat Struct Biol 7: 230-237

Released	2000-03-08
Method	X-RAY DIFFRACTION 1.1 Å
Organisms	Lambdavirus lambda
Macromolecule	HEAD DECORATION PROTEIN (protein)
Unique Ligands	GOL

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1C8O \| pdb_00001c8o	Download File View File

2.9 A STRUCTURE OF CLEAVED VIRAL SERPIN CRMA

Simonovic, M., Gettins, P.G.W., Volz, K.

(2000) Protein Sci 9: 1423-1427

Released	2000-09-06
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Cowpox virus
Macromolecule	ICE INHIBITOR (protein)

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1CE4 \| pdb_00001ce4	Download File View File

CONFORMATIONAL MODEL FOR THE CONSENSUS V3 LOOP OF THE ENVELOPE PROTEIN GP120 OF HIV-1

Vranken, W.F., Fant, F., Budesinsky, M., Borremans, F.A.M.

(1995) FEBS Lett 374: 117-121

Released	1999-03-18
Method	SOLUTION NMR
Organisms	Human immunodeficiency virus type 1 group M subtype B (isolate JRCSF)
Macromolecule	PROTEIN (V3 LOOP OF HIV-1 ENVELOPE PROTEIN) (protein)

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1CEU \| pdb_00001ceu	Download File View File

NMR STRUCTURE OF THE (1-51) N-TERMINAL DOMAIN OF THE HIV-1 REGULATORY PROTEIN

Wecker, K., Roques, B.P.

(1999) Eur J Biochem 266: 359-369

Released	2000-03-10
Method	SOLUTION NMR
Organisms	Human immunodeficiency virus type 1 group M subtype B (strain 89.6)
Macromolecule	PROTEIN (HIV-1 REGULATORY PROTEIN N-TERMINAL DOMAIN VPR) (protein)