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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Keywords HAS EXACT PHRASE "PROTEIN BINDING"

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Search Summary

This query matches 4,285 Structures.

Refinements

Structure Determination Methodology

experimental (4,285)

Scientific Name of Source Organism

	Homo sapiens (2,419)
	Mus musculus (385)
	synthetic construct (152)
	Rattus norvegicus (102)
	Saccharomyces cerevisiae S288C (100)
	Gallus gallus (84)
	Saccharomyces cerevisiae (79)
	Escherichia coli (60)
	Arabidopsis thaliana (59)
	Drosophila melanogaster (56)

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Taxonomy

	Eukaryota (3,462)
	Bacteria (817)
	other sequences (153)
	Riboviria (125)
	Eukaryota (eukaryotes) (62)
	Duplodnaviria (42)
	Archaea (35)
	Monodnaviria (9)
	Varidnaviria (4)
	unclassified sequences (3)

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Experimental Method

	X-RAY DIFFRACTION (3,488)
	SOLUTION NMR (629)
	ELECTRON MICROSCOPY (161)
	SOLID-STATE NMR (6)
	SOLUTION SCATTERING (2)
	ELECTRON CRYSTALLOGRAPHY (1)

Polymer Entity Type

	Protein (4,285)
	DNA (9)
	RNA (4)

Refinement Resolution (Å)

	0.5 - 1.0 (19)
	1.0 - 1.5 (445)
	1.5 - 2.0 (1,170)
	2.0 - 2.5 (969)
	2.5 - 3.0 (612)
	3.0 - 3.5 (282)
	3.5 - 4.0 (80)
	4.0 - 4.5 (27)
	> 4.5 (45)

Release Date

	1995 - 1999 (4)
	2000 - 2004 (217)
	2005 - 2009 (529)
	2010 - 2014 (1,148)
	2015 - 2019 (1,147)
	2020 - 2024 (1,194)
	2025 - 2029 (46)

Enzyme Classification Name

	Hydrolases (538)
	Transferases (533)
	Oxidoreductases (65)
	Ligases (58)
	Isomerases (52)
	Lyases (22)
	Translocases (15)

Membrane Protein Annotation

	OPM (48)
	MemProtMD (29)
	mpstruc (32)
	PDBTM (28)

Symmetry Type

	Asymmetric (3,452)
	Cyclic (874)
	Dihedral (106)
	Tetrahedral (9)
	Helical (7)
	Octahedral (6)
	Icosahedral (4)

SCOP Classification

	Alpha and beta proteins (a+b) (610)
	All beta proteins (586)
	Artifacts (554)
	All alpha proteins (450)
	Alpha and beta proteins (a/b) (228)
	Small proteins (69)
	Coiled coil proteins (13)
	Multi-domain proteins (alpha and beta) (24)
	Peptides (13)
	Designed proteins (5)

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AllSelected

1 to 25 of 4,285 Structures

Page 1 of 172

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2LSJ \| pdb_00002lsj	Download File View File

Solution structure of the mouse Rev1 CTD in complex with the Rev1-interacting Region (RIR)of Pol Kappa

Liu, J., Wojtaszek, J., Zhou, P.

(2012) J Biological Chem 287: 26400-26408

Released	2012-06-20
Method	SOLUTION NMR
Organisms	Mus musculus
Macromolecule	DNA polymerase kappa (protein) DNA repair protein REV1 (protein)

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2LSK \| pdb_00002lsk	Download File View File

C-terminal domain of human REV1 in complex with DNA-polymerase H (eta)

Pozhidaeva, A., Pustovalova, Y., Bezsonova, I., Korzhnev, D.

(2012) Biochemistry 51: 5506-5520

Released	2012-06-27
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	DNA polymerase eta (protein) DNA repair protein REV1 (protein)

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2LXC \| pdb_00002lxc	Download File View File

Solution structure of the complex between the Sgt2 homodimerization domain and the Get5 UBL domain

Chartron, J.W., Vandervelde, D.G., Clemons Jr., W.M.

(2012) Cell Rep 2: 1620-1632

Released	2012-11-21
Method	SOLUTION NMR
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	Small glutamine-rich tetratricopeptide repeat-containing protein 2 (protein) Ubiquitin-like protein MDY2 (protein)

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2M0V \| pdb_00002m0v	Download File View File

Complex structure of C-terminal CFTR peptide and extended PDZ2 domain from NHERF1

Bhattacharya, S., Ju, J.H., Cowburn, D., Bu, Z.

(2013) J Mol Biology 425: 2509-2528

Released	2013-04-24
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	C-terminal CFTR peptide (protein) Na(+)/H(+) exchange regulatory cofactor NHE-RF1 (protein)

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4G7X \| pdb_00004g7x	Download File View File

Crystal structure of a complex between the CTXphi pIII N-terminal domain and the Vibrio cholerae TolA C-terminal domain

Kolappan, S., Ford, C.G., Craig, L.

(2012) J Biological Chem 287: 36258-36272

Released	2012-08-29
Method	X-RAY DIFFRACTION 1.44 Å
Organisms	Vibrio cholerae CIRS101 Vibrio cholerae O395
Macromolecule	Putative uncharacterized protein (protein) TolA protein (protein)

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4GIQ \| pdb_00004giq	Download File View File

Crystal Structure of mouse RANK bound to RANKL

Nelson, C.A., Wang, M.W.-H., Fremont, D.H.

(2012) Structure 20: 1971-1982

Released	2012-10-24
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Mus musculus
Macromolecule	Tumor necrosis factor ligand superfamily member 11 (protein) Tumor necrosis factor receptor superfamily member 11A (protein)
Unique Ligands	CL, NA, NAG

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4N1A \| pdb_00004n1a	Download File View File

Thermomonospora curvata EccC (ATPases 2 and 3) in complex with a signal sequence peptide

Dovala, D.L., Bendebury, A., Cox, J.S., Stroud, R.M., Rosenberg, O.S.

(2015) Cell 161: 501-512

Released	2015-02-11
Method	X-RAY DIFFRACTION 3.24 Å
Organisms	Thermomonospora curvata DSM 43183
Macromolecule	Cell divisionFtsK/SpoIIIE (protein) Uncharacterized protein (protein)
Unique Ligands	ATP, MG

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1BV8 \| pdb_00001bv8	Download File View File

RECEPTOR DOMAIN FROM ALPHA-2-MACROGLOBULIN

Huang, W., Dolmer, K., Liao, X., Gettins, P.G.W.

(1999) J Biological Chem 274: 14130-14136

Released	2000-04-05
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	ALPHA-2-MACROGLOBULIN (protein)

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1BY7 \| pdb_00001by7	Download File View File

HUMAN PLASMINOGEN ACTIVATOR INHIBITOR-2. LOOP (66-98) DELETION MUTANT

Harrop, S.J., King, G.C., Mabbutt, B.C., Curmi, P.M.G.

(1999) Structure 7: 43-54

Released	1999-10-24
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	PROTEIN (PLASMINOGEN ACTIVATOR INHIBITOR-2) (protein)

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1E0Q \| pdb_00001e0q	Download File View File

Mutant Peptide from the first N-terminal 17 amino-acid of Ubiquitin

Zerella, R., Chen, P.Y., Evans, P.A., Raine, A., Williams, D.H.

(2000) Protein Sci 9: 2142

Released	2001-01-16
Method	SOLUTION NMR
Organisms	Bos taurus
Macromolecule	POLYUBIQUITIN-B (protein)

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1EDY \| pdb_00001edy	Download File View File

CRYSTAL STRUCTURE OF RAT ALPHA 1-MACROGLOBULIN RECEPTOR BINDING DOMAIN

Xiao, T., DeCamp, D.L., Sprang, S.R.

(2000) Protein Sci 9: 1889-1897

Released	2000-12-01
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Rattus norvegicus
Macromolecule	ALPHA 1-MACROGLOBULIN (protein)

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1EJL \| pdb_00001ejl	Download File View File

MOUSE IMPORTIN ALPHA-SV40 LARGE T ANTIGEN NLS PEPTIDE COMPLEX

Fontes, M.R., Teh, T., Kobe, B.

(2000) J Mol Biology 297: 1183-1194

Released	2000-04-24
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Mus musculus Simian virus 40
Macromolecule	IMPORTIN ALPHA (protein) SV40 LARGE T ANTIGEN NLS PEPTIDE (protein)

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1EO6 \| pdb_00001eo6	Download File View File

CRYSTAL STRUCTURE OF GATE-16

Paz, Y., Elazar, Z., Fass, D.

(2000) J Biological Chem 275: 25445-25450

Released	2000-09-08
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Bos taurus
Macromolecule	GOLGI-ASSOCIATED ATPASE ENHANCER OF 16 KD (protein)

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1FCL \| pdb_00001fcl	Download File View File

DELTA1.5: A COMPUTATIONALLY DESIGNED CORE VARIANT OF THE B1 DOMAIN OF STREPTOCOCCAL PROTEIN G

Ross, S.A., Sarisky, C.A., Su, A., Mayo, S.L.

(2001) Protein Sci 10: 450-454

Released	2001-09-19
Method	SOLUTION NMR
Organisms	Streptococcus sp.
Macromolecule	IMMUNOGLOBULIN G BINDING PROTEIN G (protein)

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1FD6 \| pdb_00001fd6	Download File View File

DELTA0: A COMPUTATIONALLY DESIGNED CORE VARIANT OF THE B1 DOMAIN OF STREPTOCOCCAL PROTEIN G

Ross, S.A., Sarisky, C.A., Su, A., Mayo, S.L.

(2001) Protein Sci 10: 450-454

Released	2001-09-19
Method	SOLUTION NMR
Organisms	Streptococcus sp.
Macromolecule	IMMUNOGLOBULIN G BINDING PROTEIN G (protein)

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1FE6 \| pdb_00001fe6	Download File View File

CRYSTAL STRUCTURE OF A NATURALLY OCCURING PARALLEL RIGHT-HANDED COILED-COIL TETRAMER

Stetefeld, J.

(2000) Nat Struct Biol 7: 772-776

Released	2001-01-21
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Staphylothermus marinus
Macromolecule	TETRABRACHION (protein)

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1FU6 \| pdb_00001fu6	Download File View File

NMR STRUCTURE OF THE N-SH2 DOMAIN OF THE P85 SUBUNIT OF PI3-KINASE

Weber, T., Schaffhausen, B., Liu, Y., Guenther, U.L.

(2000) Biochemistry 39: 15860-15869

Released	2001-02-21
Method	SOLUTION NMR
Organisms	Rattus norvegicus
Macromolecule	PHOSPHATIDYLINOSITOL 3-KINASE REGULATORY ALPHA SUBUNIT (protein)

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1GD3 \| pdb_00001gd3	Download File View File

refined solution structure of human cystatin A

Shimba, N., Kariya, E., Tate, S., Kaji, H., Kainosho, M.

(2000) J Struct Funct Genomics 1: 26-42

Released	2001-09-08
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	CYSTATIN A (protein)

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1GD4 \| pdb_00001gd4	Download File View File

SOLUTION STRUCTURE OF P25S CYSTATIN A

Shimba, N., Kariya, E., Tate, S., Kaji, H., Kainosho, M.

(2000) J Struct Funct Genomics 1: 26-42

Released	2001-09-08
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	CYSTATIN A (protein)

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1GD5 \| pdb_00001gd5	Download File View File

SOLUTION STRUCTURE OF THE PX DOMAIN FROM HUMAN P47PHOX NADPH OXIDASE

Hiroaki, H., Ago, T., Ito, T., Sumimoto, H., Kohda, D.

(2001) Nat Struct Biol 8: 526-530

Released	2001-06-13
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	NEUTROPHIL CYTOSOL FACTOR 1 (protein)

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1GHH \| pdb_00001ghh	Download File View File

SOLUTION STRUCTURE OF DINI

Ramirez, B.E., Voloshin, O.N., Camerini-Otero, R.D., Bax, A.

(2000) Protein Sci 9: 2161-2169

Released	2001-01-10
Method	SOLUTION NMR
Organisms	Escherichia coli
Macromolecule	DNA-DAMAGE-INDUCIBLE PROTEIN I (protein)

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1H3H \| pdb_00001h3h	Download File View File

Structural Basis for Specific Recognition of an RxxK-containing SLP-76 peptide by the Gads C-terminal SH3 domain

Liu, Q., Berry, D., Nash, P., Pawson, T., McGlade, C.J., Li, S.S.

(2003) Mol Cell 11: 471

Released	2003-03-06
Method	SOLUTION NMR
Organisms	Homo sapiens Mus musculus
Macromolecule	GRB2-RELATED ADAPTOR PROTEIN 2 (protein) LYMPHOCYTE CYTOSOLIC PROTEIN 2 (protein)