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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Keywords HAS EXACT PHRASE "BIOSYNTHETIC PROTEIN"

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Search Summary

This query matches 1,686 Structures.

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Structure Determination Methodology

experimental (1,686)

Scientific Name of Source Organism

	Homo sapiens (129)
	synthetic construct (76)
	Escherichia coli (55)
	Bacillus subtilis subsp. subtilis str. 168 (34)
	Saccharomyces cerevisiae (34)
	Escherichia coli K-12 (28)
	Mycobacterium tuberculosis H37Rv (19)
	Staphylococcus aureus (19)
	Bacillus subtilis (18)
	Methanocaldococcus jannaschii DSM 2661 (18)

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Taxonomy

	Bacteria (1,111)
	Eukaryota (457)
	other sequences (76)
	Archaea (72)
	Duplodnaviria (9)
	Riboviria (7)
	Varidnaviria (2)
	unclassified bacterial viruses (2)
	Monodnaviria (1)
	unclassified sequences (1)

Experimental Method

	X-RAY DIFFRACTION (1,465)
	ELECTRON MICROSCOPY (140)
	SOLUTION NMR (80)
	SOLID-STATE NMR (1)

Polymer Entity Type

	Protein (1,686)
	RNA (7)
	DNA (3)

Refinement Resolution (Å)

	0.5 - 1.0 (5)
	1.0 - 1.5 (108)
	1.5 - 2.0 (530)
	2.0 - 2.5 (505)
	2.5 - 3.0 (291)
	3.0 - 3.5 (119)
	3.5 - 4.0 (25)
	4.0 - 4.5 (14)
	> 4.5 (8)

Release Date

	2000 - 2004 (65)
	2005 - 2009 (206)
	2010 - 2014 (113)
	2015 - 2019 (350)
	2020 - 2024 (883)
	2025 - 2029 (69)

Enzyme Classification Name

	Transferases (388)
	Lyases (197)
	Oxidoreductases (191)
	Ligases (99)
	Hydrolases (93)
	Isomerases (36)
	Translocases (9)

Membrane Protein Annotation

	mpstruc (9)
	PDBTM (8)
	MemProtMD (7)
	OPM (12)

Symmetry Type

	Asymmetric (738)
	Cyclic (778)
	Dihedral (229)
	Helical (12)
	Tetrahedral (11)
	Icosahedral (3)
	Octahedral (2)

SCOP Classification

	Alpha and beta proteins (a/b) (214)
	Alpha and beta proteins (a+b) (108)
	Artifacts (94)
	All beta proteins (54)
	All alpha proteins (49)
	Multi-domain proteins (alpha and beta) (33)
	Coiled coil proteins (5)
	Small proteins (5)
	Low resolution protein structures (2)
	Membrane and cell surface proteins and peptides (1)

AllSelected

1 to 25 of 1,686 Structures

Page 1 of 68

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1FC5 \| pdb_00001fc5	Download File View File

CRYSTAL STRUCTURE OF MOLYBDOPTERIN BIOSYNTHESIS MOEA PROTEIN

Huang, W., Cygler, M., Montreal-Kingston Bacterial Structural Genomics Initiative (BSGI)

(2001) J Mol Biology 310: 419-431

Released	2001-07-25
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Escherichia coli
Macromolecule	MOLYBDOPTERIN BIOSYNTHESIS MOEA PROTEIN (protein)
Unique Ligands	MG

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1HO1 \| pdb_00001ho1	Download File View File

CRYSTAL STRUCTURE OF PYRIDOXINE 5'-PHOSPHATE SYNTHASE

Garrido-Franco, M., Laber, B., Huber, R., Clausen, T.

(2001) Structure 9: 245-253

Released	2001-03-28
Method	X-RAY DIFFRACTION 2 Å
Organisms	Escherichia coli
Macromolecule	PYRIDOXINE 5'-PHOSPHATE SYNTHASE (protein)

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1HO4 \| pdb_00001ho4	Download File View File

CRYSTAL STRUCTURE OF PYRIDOXINE 5'-PHOSPHATE SYNTHASE IN COMPLEX WITH PYRIDOXINE 5'-PHOSPHATE AND INORGANIC PHOSPHATE

Garrido-Franco, M., Laber, B., Huber, R., Clausen, T.

(2001) Structure 9: 245-253

Released	2001-03-28
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Escherichia coli
Macromolecule	PYRIDOXINE 5'-PHOSPHATE SYNTHASE (protein)
Unique Ligands	PO4, PXP

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1I24 \| pdb_00001i24	Download File View File

HIGH RESOLUTION CRYSTAL STRUCTURE OF THE WILD-TYPE PROTEIN SQD1, WITH NAD AND UDP-GLUCOSE

Theisen, M.J., Sanda, S.L., Ginell, S.L., Benning, C., Garavito, R.M.

To be published

Released	2003-07-01
Method	X-RAY DIFFRACTION 1.2 Å
Organisms	Arabidopsis thaliana
Macromolecule	SULFOLIPID BIOSYNTHESIS PROTEIN SQD1 (protein)
Unique Ligands	NAD, SO4, UPG

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1I2B \| pdb_00001i2b	Download File View File

CRYSTAL STRUCTURE OF MUTANT T145A SQD1 PROTEIN COMPLEX WITH NAD AND UDP-SULFOQUINOVOSE/UDP-GLUCOSE

Theisen, M.J., Sanda, S.L., Ginell, S.L., Benning, C., Garavito, R.M.

To be published

Released	2003-07-01
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Arabidopsis thaliana
Macromolecule	SULFOLIPID BIOSYNTHESIS PROTEIN SQD1 (protein)
Unique Ligands	NAD, SO4, UPG, USQ

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1I2C \| pdb_00001i2c	Download File View File

CRYSTAL STRUCTURE OF MUTANT T145A SQD1 PROTEIN COMPLEX WITH NAD AND UDP-GLUCOSE

Theisen, M.J., Sanda, S.L., Ginell, S.L., Benning, C., Garavito, R.M.

To be published

Released	2003-07-01
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Arabidopsis thaliana
Macromolecule	SULFOLIPID BIOSYNTHESIS PROTEIN SQD1 (protein)
Unique Ligands	NAD, SO4, UPG

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1IXN \| pdb_00001ixn	Download File View File

Enzyme-Substrate Complex of Pyridoxine 5'-Phosphate Synthase

Garrido-Franco, M., Laber, B., Huber, R., Clausen, T.

(2002) J Mol Biology 321: 601-612

Released	2003-02-11
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Escherichia coli
Macromolecule	Pyridoxine 5'-Phosphate Synthase (protein)
Unique Ligands	DXP, G3P

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1IXO \| pdb_00001ixo	Download File View File

Enzyme-analogue substrate complex of Pyridoxine 5'-Phosphate Synthase

Garrido-Franco, M., Laber, B., Huber, R., Clausen, T.

(2002) J Mol Biology 321: 601-612

Released	2003-02-11
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Escherichia coli
Macromolecule	Pyridoxine 5'-Phosphate synthase (protein)
Unique Ligands	G3P

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1IXP \| pdb_00001ixp	Download File View File

Enzyme-phosphate Complex of Pyridoxine 5'-Phosphate synthase

Garrido-Franco, M., Laber, B., Huber, R., Clausen, T.

(2002) J Mol Biology 321: 601-612

Released	2003-02-11
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Escherichia coli
Macromolecule	Pyridoxine 5'-Phosphate synthase (protein)
Unique Ligands	PO4

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1IXQ \| pdb_00001ixq	Download File View File

Enzyme-Phosphate2 Complex of Pyridoxine 5'-Phosphate synthase

Garrido-Franco, M., Laber, B., Huber, R., Clausen, T.

(2002) J Mol Biology 321: 601-612

Released	2003-02-11
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Escherichia coli
Macromolecule	Pyridoxine 5'-phosphate Synthase (protein)
Unique Ligands	PO4

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1IZ6 \| pdb_00001iz6	Download File View File

Crystal Structure of Translation Initiation Factor 5A from Pyrococcus Horikoshii

Yao, M., Ohsawa, A., Kikukawa, S., Tanaka, I., Kimura, M.

(2003) J Biochem 133: 75-81

Released	2003-01-28
Method	X-RAY DIFFRACTION 2 Å
Organisms	Pyrococcus horikoshii OT3
Macromolecule	Initiation Factor 5A (protein)

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1JY8 \| pdb_00001jy8	Download File View File

2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (IspF)

Steinbacher, S., Kaiser, J., Wungsintaweekul, J., Hecht, S., Eisenreich, W., Gerhardt, S., Bacher, A., Rohdich, F.

(2002) J Mol Biology 316: 79-88

Released	2002-01-30
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Escherichia coli
Macromolecule	2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (protein)
Unique Ligands	C5P, CDI, ZN

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1L5A \| pdb_00001l5a	Download File View File

Crystal Structure of VibH, an NRPS Condensation Enzyme

Keating, T.A., Marshall, C.G., Walsh, C.T., Keating, A.E.

(2002) Nat Struct Biol 9: 522-526

Released	2002-06-26
Method	X-RAY DIFFRACTION 2.55 Å
Organisms	Vibrio cholerae
Macromolecule	amide synthase (protein)

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1M5W \| pdb_00001m5w	Download File View File

1.96 A Crystal Structure of Pyridoxine 5'-Phosphate Synthase in Complex with 1-deoxy-D-xylulose phosphate

Yeh, J.I., Du, S., Pohl, E., Cane, D.E.

(2002) Biochemistry 41: 11649-11657

Released	2003-07-15
Method	X-RAY DIFFRACTION 1.96 Å
Organisms	Escherichia coli
Macromolecule	Pyridoxal phosphate biosynthetic protein pdxJ (protein)
Unique Ligands	DXP, PO4

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1MKZ \| pdb_00001mkz	Download File View File

Crystal structure of MoaB protein at 1.6 A resolution.

Sanishvili, R., Skarina, T., Joachimiak, A., Edwards, A., Savchenko, A., Midwest Center for Structural Genomics (MCSG)

(2004) J Biological Chem 279: 42139-42146

Released	2003-04-22
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Escherichia coli
Macromolecule	Molybdenum cofactor biosynthesis protein B (protein)
Unique Ligands	ACY, SO4

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1MWR \| pdb_00001mwr	Download File View File

Structure of SeMet Penicillin binding protein 2a from methicillin resistant Staphylococcus aureus strain 27r (trigonal form) at 2.45 A resolution.

Lim, D.C., Strynadka, N.C.J.

(2002) Nat Struct Biol 9: 870-876

Released	2002-11-06
Method	X-RAY DIFFRACTION 2.45 Å
Organisms	Staphylococcus aureus
Macromolecule	penicillin-binding protein 2a (protein)
Unique Ligands	CD, CL

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1MWS \| pdb_00001mws	Download File View File

Structure of nitrocefin acyl-Penicillin binding protein 2a from methicillin resistant Staphylococcus aureus strain 27r at 2.00 A resolution.

Lim, D.C., Strynadka, N.C.J.

(2002) Nat Struct Biol 9: 870-876

Released	2002-11-06
Method	X-RAY DIFFRACTION 2 Å
Organisms	Staphylococcus aureus
Macromolecule	penicillin-binding protein 2a (protein)
Unique Ligands	CD, CL

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1MWT \| pdb_00001mwt	Download File View File

Structure of penicillin G acyl-Penicillin binding protein 2a from methicillin resistant Staphylococcus aureus strain 27r at 2.45 A resolution.

Lim, D.C., Strynadka, N.C.J.

(2002) Nat Struct Biol 9: 870-876

Released	2002-11-06
Method	X-RAY DIFFRACTION 2.45 Å
Organisms	Staphylococcus aureus
Macromolecule	PBP2a (protein)
Unique Ligands	CD, CL, PNM

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1MWU \| pdb_00001mwu	Download File View File

Structure of methicillin acyl-Penicillin binding protein 2a from methicillin resistant Staphylococcus aureus strain 27r at 2.60 A resolution.

Lim, D.C., Strynadka, N.C.J.

(2002) Nat Struct Biol 9: 870-876

Released	2002-11-06
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Staphylococcus aureus
Macromolecule	penicillin-binding protein 2a (protein)
Unique Ligands	7EP, CD, CL

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1N0E \| pdb_00001n0e	Download File View File

CRYSTAL STRUCTURE OF A CELL DIVISION AND CELL WALL BIOSYNTHESIS PROTEIN UPF0040 FROM MYCOPLASMA PNEUMONIAE: INDICATION OF A NOVEL FOLD WITH A POSSIBLE NEW CONSERVED SEQUENCE MOTIF

Chen, S., Jancrick, J., Yokota, H., Kim, R., Kim, S.-H., Berkeley Structural Genomics Center (BSGC)

(2004) Proteins 55: 785-791

Released	2003-10-21
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Mycoplasmoides pneumoniae
Macromolecule	Protein mraZ (protein)

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1N0F \| pdb_00001n0f	Download File View File

CRYSTAL STRUCTURE OF A CELL DIVISION AND CELL WALL BIOSYNTHESIS PROTEIN UPF0040 FROM MYCOPLASMA PNEUMONIAE: INDICATION OF A NOVEL FOLD WITH A POSSIBLE NEW CONSERVED SEQUENCE MOTIF

Chen, S., Jancrick, J., Yokota, H., Kim, R., Kim, S.-H., Berkeley Structural Genomics Center (BSGC)

(2004) Proteins 55: 785-791

Released	2003-10-21
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Mycoplasmoides pneumoniae
Macromolecule	Protein mraZ (protein)

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1N0G \| pdb_00001n0g	Download File View File

Crystal Structure of A Cell Division and Cell Wall Biosynthesis Protein UPF0040 from Mycoplasma pneumoniae: Indication of A Novel Fold with A Possible New Conserved Sequence Motif

Chen, S., Jancarik, J., Yokota, H., Kim, R., Kim, S.-H., Berkeley Structural Genomics Center (BSGC)

(2004) Proteins 55: 785-791

Released	2003-10-21
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Mycoplasmoides pneumoniae
Macromolecule	Protein mraZ (protein)

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1N9W \| pdb_00001n9w	Download File View File

Crystal structure of the non-discriminating and archaeal-type aspartyl-tRNA synthetase from Thermus thermophilus

Charron, C., Roy, H., Blaise, M., Giege, R., Kern, D.

(2003) EMBO J 22: 1632-1643

Released	2003-04-08
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Thermus thermophilus
Macromolecule	aspartyl-tRNA synthetase 2 (protein)

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1NCE \| pdb_00001nce	Download File View File

Crystal structure of a ternary complex of E. coli thymidylate synthase D169C with dUMP and the antifolate CB3717

Birdsall, D.L., Finer-Moore, J., Stroud, R.M.

(2003) Protein Eng 16: 229-240

Released	2002-12-25
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Escherichia coli Escherichia coli O157:H7
Macromolecule	Thymidylate synthase (protein)
Unique Ligands	CB3, UMP

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1NP6 \| pdb_00001np6	Download File View File

Crystal structure of Escherichia coli MobB

McLuskey, K., Harrison, J.A., Schuttelkopf, A.W., Boxer, D.H., Hunter, W.N.

(2003) J Biological Chem 278: 23706-23713

Released	2003-04-29
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Escherichia coli
Macromolecule	Molybdopterin-guanine dinucleotide biosynthesis protein B (protein)
Unique Ligands	SO4

1 to 25 of 1,686 Structures

Page 1 of 68

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1FC5 | pdb_00001fc5

1HO1 | pdb_00001ho1

1HO4 | pdb_00001ho4

1I24 | pdb_00001i24

1I2B | pdb_00001i2b

1I2C | pdb_00001i2c

1IXN | pdb_00001ixn

1IXO | pdb_00001ixo

1IXP | pdb_00001ixp

1IXQ | pdb_00001ixq

1IZ6 | pdb_00001iz6

1JY8 | pdb_00001jy8

1L5A | pdb_00001l5a

1M5W | pdb_00001m5w

1MKZ | pdb_00001mkz

1MWR | pdb_00001mwr

1MWS | pdb_00001mws

1MWT | pdb_00001mwt

1MWU | pdb_00001mwu

1N0E | pdb_00001n0e

1N0F | pdb_00001n0f

1N0G | pdb_00001n0g

1N9W | pdb_00001n9w

1NCE | pdb_00001nce

1NP6 | pdb_00001np6