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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: PubMed ID = 30279311

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Search Summary

This query matches 225 Structures.

Refinements

Structure Determination Methodology

experimental (225)

Scientific Name of Source Organism

	Homo sapiens (218)
	Mus musculus (14)
	Legionella pneumophila (13)
	synthetic construct (13)
	Xenopus laevis (9)
	Saccharomyces cerevisiae (5)
	Saccharomyces cerevisiae S288C (5)
	Schizosaccharomyces pombe 972h- (4)
	Bombyx mori (3)
	Bos taurus (3)

More...

Taxonomy

	Eukaryota (223)
	Bacteria (27)
	other sequences (13)
	Riboviria (6)
	Eukaryota (eukaryotes) (2)

Experimental Method

	X-RAY DIFFRACTION (161)
	SOLUTION NMR (34)
	ELECTRON MICROSCOPY (29)
	SOLID-STATE NMR (1)

Polymer Entity Type

	Protein (225)
	DNA (14)
	NA-hybrid (1)

Refinement Resolution (Å)

	0.5 - 1.0 (1)
	1.0 - 1.5 (7)
	1.5 - 2.0 (41)
	2.0 - 2.5 (44)
	2.5 - 3.0 (45)
	3.0 - 3.5 (31)
	3.5 - 4.0 (19)
	4.0 - 4.5 (2)

Release Date

	1995 - 1999 (2)
	2005 - 2009 (19)
	2010 - 2014 (74)
	2015 - 2019 (44)
	2020 - 2024 (85)
	2025 - 2029 (1)

Enzyme Classification Name

	Transferases (79)
	Hydrolases (59)
	Ligases (23)

Symmetry Type

	Asymmetric (209)
	Cyclic (19)

SCOP Classification

	Alpha and beta proteins (a+b) (152)
	Artifacts (34)
	All beta proteins (9)
	All alpha proteins (3)

AllSelected

1 to 25 of 225 Structures

Page 1 of 9

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1CMX \| pdb_00001cmx	Download File View File

STRUCTURAL BASIS FOR THE SPECIFICITY OF UBIQUITIN C-TERMINAL HYDROLASES

Johnston, S.C., Riddle, S.M., Cohen, R.E., Hill, C.P.

(1999) EMBO J 18: 3877-3887

Released	1999-07-27
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Homo sapiens Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Macromolecule	PROTEIN (UBIQUITIN YUH1-UBAL) (protein)

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1UD7 \| pdb_00001ud7	Download File View File

SOLUTION STRUCTURE OF THE DESIGNED HYDROPHOBIC CORE MUTANT OF UBIQUITIN, 1D7

Johnson, E.C., Lazar, G.A., Desjarlais, J.R., Handel, T.M.

(1999) Structure 7: 967-976

Released	1999-05-06
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	PROTEIN (UBIQUITIN CORE MUTANT 1D7) (protein)

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2HTH \| pdb_00002hth	Download File View File

Structural basis for ubiquitin recognition by the human EAP45/ESCRT-II GLUE domain

Alam, S.L., Whitby, F.G., Hill, C.P., Sundquist, W.I.

(2006) Nat Struct Mol Biol 13: 1029-1030

Released	2006-10-24
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Homo sapiens
Macromolecule	Ubiquitin (protein) Vacuolar protein sorting protein 36 (protein)

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2IBI \| pdb_00002ibi	Download File View File

Covalent Ubiquitin-USP2 Complex

Walker, J.R., Avvakumov, G.V., Bernstein, G., Xue, S., Finerty Jr., P.J., MacKenzie, F., Weigelt, J., Sundstrom, M., Arrowsmith, C.H., Edwards, A.M., Bochkarev, A., Dhe-Paganon, S., Structural Genomics Consortium (SGC)

To be published

Released	2006-10-24
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens
Macromolecule	Ubiquitin (protein) Ubiquitin carboxyl-terminal hydrolase 2 (protein)
Unique Ligands	NEH, ZN

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2JRI \| pdb_00002jri	Download File View File

Solution structure of the Josephin domain of Ataxin-3 in complex with ubiquitin molecule.

Nicastro, G., Masino, L., Esposito, V., Menon, R., Pastore, A.

To be published

Released	2008-07-01
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Ataxin-3 (protein) UBC protein (protein)

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2K6D \| pdb_00002k6d	Download File View File

CIN85 Sh3-C domain in complex with ubiquitin

Forman-Kay, J., Bezsonova, I.

(2008) Biochemistry 47: 8937-8949

Released	2008-08-19
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	SH3 domain-containing kinase-binding protein 1 (protein) Ubiquitin (protein)

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2K8B \| pdb_00002k8b	Download File View File

Solution structure of PLAA family ubiquitin binding domain (PFUC) cis isomer in complex with ubiquitin

Fu, Q.S., Zhou, C.J., Gao, H.C., Lin, D.H., Hu, H.Y.

(2009) J Biological Chem 284: 19043-19052

Released	2009-05-05
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Phospholipase A-2-activating protein (protein) Ubiquitin (protein)

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2K8C \| pdb_00002k8c	Download File View File

Solution structure of PLAA family ubiquitin binding domain (PFUC) trans isomer in complex with ubiquitin

Fu, Q.S., Zhou, C.J., Gao, H.C., Lin, D.H., Hu, H.Y.

(2009) J Biological Chem 284: 19043-19052

Released	2009-05-05
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Phospholipase A-2-activating protein (protein) Ubiquitin (protein)

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2KDF \| pdb_00002kdf	Download File View File

NMR structure of minor S5a (196-306):K48 linked diubiquitin species

Zhang, N., Wang, Q., Ehlinger, A., Randles, L., Lary, J.W., Kang, Y., Haririnia, A., Cole, J.L., Fushman, D., Walters, K.J.

(2009) Mol Cell 35: 280-290

Released	2009-09-01
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	26S proteasome non-ATPase regulatory subunit 4 (protein) Ubiquitin (protein)

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2KHW \| pdb_00002khw	Download File View File

Solution Structure of the human Polymerase iota UBM2-Ubiquitin Complex

Bomar, M.G., D'Souza, S., Bienko, M., Dikic, I., Walker, G.

To be published

Released	2010-02-23
Method	SOLUTION NMR
Organisms	Homo sapiens Streptococcus sp. 'group G
Macromolecule	Immunoglobulin G-binding protein G, DNA polymerase iota (protein) Ubiquitin (protein)

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2KJH \| pdb_00002kjh	Download File View File

NMR based structural model of the UBCH8-UBIQUITIN complex

Serniwka, S.A., Shaw, G.S.

(2009) Biochemistry 48: 12169-12179

Released	2009-12-08
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Ubiquitin (protein) Ubiquitin/ISG15-conjugating enzyme E2 L6 (protein)

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2KN5 \| pdb_00002kn5	Download File View File

A Correspondence Between Solution-State Dynamics of an Individual Protein and the Sequence and Conformational Diversity of its Family

Friedland, G.D.

(2009) PLoS Comput Biol 5: e1000393-e1000393

Released	2009-11-17
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Ubiquitin (protein)

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2KTF \| pdb_00002ktf	Download File View File

Solution NMR structure of human polymerase iota UBM2 in complex with ubiquitin

Cui, G., Benirschke, R., Mer, G.

(2010) Biochemistry 49: 10198-10207

Released	2010-11-03
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	DNA polymerase iota (protein) Ubiquitin (protein)

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2KWU \| pdb_00002kwu	Download File View File

Solution Structure of UBM2 of murine Polymerase iota in Complex with Ubiquitin

Burschowsky, D., Rudolf, F., Rabut, G., Herrmann, T., Peter, M., Wider, G.

(2011) J Biological Chem 286: 1364-1373

Released	2010-10-06
Method	SOLUTION NMR
Organisms	Homo sapiens Mus musculus
Macromolecule	DNA polymerase iota (protein) Ubiquitin (protein)

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2KWV \| pdb_00002kwv	Download File View File

Solution Structure of UBM1 of murine Polymerase iota in Complex with Ubiquitin

Burschowsky, D., Rudolf, F., Rabut, G., Herrmann, T., Peter, M., Wider, G.

(2011) J Biological Chem 286: 1364-1373

Released	2010-10-06
Method	SOLUTION NMR
Organisms	Homo sapiens Mus musculus
Macromolecule	DNA polymerase iota (protein) Ubiquitin (protein)

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2L0F \| pdb_00002l0f	Download File View File

Solution NMR structure of human polymerase iota UBM2 (P692A mutant) in complex with ubiquitin

Cui, G., Benirschke, R., Mer, G.

(2010) Biochemistry 49: 10198-10207

Released	2010-11-03
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	DNA polymerase iota (protein) Ubiquitin (protein)

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2L3Z \| pdb_00002l3z	Download File View File

Proton-Detected 4D DREAM Solid-State NMR Structure of Ubiquitin

Huber, M., Hiller, S., Schanda, P., Ernst, M., Bockmann, A., Verel, R., Meier, B.H.

(2011) Chemphyschem 12: 915-918

Released	2011-02-16
Method	SOLID-STATE NMR
Organisms	Homo sapiens
Macromolecule	Ubiquitin (protein)

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2LD9 \| pdb_00002ld9	Download File View File

Backbone Structure of Ubiquitin determined using Backbone amide NOEs and Backbone N-H and N-C RDCs

Kumar, D., Hosur, R.

To be published

Released	2011-06-08
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Ubiquitin (protein)

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2LJ5 \| pdb_00002lj5	Download File View File

Description of the Structural fluctuations of proteins from structure-based calculations of Residual dipolar couplings

De Simone, A., Montalvao, R., Vendruscolo, M.

(2012) J Biomol NMR 53: 281-292

Released	2012-07-18
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Ubiquitin (protein)

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2LVO \| pdb_00002lvo	Download File View File

Structure of the gp78CUE domain bound to monubiquitin

Liu, S., Chen, Y., Huang, T., Tarasov, S.G., King, A., Li, J., Weissman, A.M., Byrd, R.A., Das, R.

(2012) Structure 20: 2138-2150

Released	2012-11-21
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	E3 ubiquitin-protein ligase AMFR (protein) Ubiquitin (protein)

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2LVP \| pdb_00002lvp	Download File View File

gp78CUE domain bound to the distal ubiquitin of K48-linked diubiquitin

Liu, S., Chen, Y., Huang, T., Tarasov, S.G., King, A., Li, J., Weissman, A.M., Byrd, R.A., Das, R.

(2012) Structure 20: 2138-2150

Released	2012-11-21
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	E3 ubiquitin-protein ligase AMFR (protein) Ubiquitin (protein)

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2LVQ \| pdb_00002lvq	Download File View File

gp78CUE domain bound to the proximal ubiquitin of K48-linked diubiquitin

Liu, S., Chen, Y., Huang, T., Tarasov, S.G., King, A., Li, J., Weissman, A.M., Byrd, R.A., Das, R.

(2012) Structure 20: 2138-2150

Released	2012-11-21
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	E3 ubiquitin-protein ligase AMFR (protein) Ubiquitin (protein)

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2LZ6 \| pdb_00002lz6	Download File View File

Distinct ubiquitin binding modes exhibited by sh3 domains: molecular determinants and functional implications

Ortega-Roldan, J., Azuaga, A., Blackledge, M., Van Nuland, N.

(2013) PLoS One 8: e73018-e73018

Released	2013-10-02
Method	SOLUTION NMR
Organisms	Homo sapiens Mus musculus
Macromolecule	CD2-associated protein (protein) Ubiquitin (protein)

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2MBO \| pdb_00002mbo	Download File View File

K11-linked Diubiquitin average solution structure at pH 6.8, 0 mM NaCl

Castaneda, C.A., Fushman, D.

(2013) Structure 21: 1168-1181

Released	2013-09-04
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Ubiquitin (protein)

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2MBQ \| pdb_00002mbq	Download File View File

K11-linked Diubiquitin average solution structure at pH 6.8, 150 mM NaCl

Castaneda, C.A., Fushman, D.

(2013) Structure 21: 1168-1181

Released	2013-09-04
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Ubiquitin (protein)

1 to 25 of 225 Structures

Page 1 of 9

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1CMX | pdb_00001cmx

1UD7 | pdb_00001ud7

2HTH | pdb_00002hth

2IBI | pdb_00002ibi

2JRI | pdb_00002jri

2K6D | pdb_00002k6d

2K8B | pdb_00002k8b

2K8C | pdb_00002k8c

2KDF | pdb_00002kdf

2KHW | pdb_00002khw

2KJH | pdb_00002kjh

2KN5 | pdb_00002kn5

2KTF | pdb_00002ktf

2KWU | pdb_00002kwu

2KWV | pdb_00002kwv

2L0F | pdb_00002l0f

2L3Z | pdb_00002l3z

2LD9 | pdb_00002ld9

2LJ5 | pdb_00002lj5

2LVO | pdb_00002lvo

2LVP | pdb_00002lvp

2LVQ | pdb_00002lvq

2LZ6 | pdb_00002lz6

2MBO | pdb_00002mbo

2MBQ | pdb_00002mbq