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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Source Organism Taxonomy Name (Full Lineage) = "Tequintavirus T5"

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Search Summary

This query matches 46 Structures.

Refinements

Structure Determination Methodology

experimental (46)

Scientific Name of Source Organism

	Escherichia phage T5 (23)
	Tequintavirus T5 (23)
	Escherichia coli K-12 (2)
	synthetic construct (2)
	Escherichia coli (1)

Taxonomy

	Duplodnaviria (46)
	Bacteria (3)
	other sequences (2)

Experimental Method

	ELECTRON MICROSCOPY (22)
	X-RAY DIFFRACTION (19)
	SOLUTION NMR (5)

Polymer Entity Type

	Protein (46)
	DNA (2)

Refinement Resolution (Å)

	1.0 - 1.5 (1)
	1.5 - 2.0 (5)
	2.0 - 2.5 (6)
	2.5 - 3.0 (7)
	3.0 - 3.5 (5)
	3.5 - 4.0 (7)
	4.0 - 4.5 (6)
	> 4.5 (4)

Release Date

	1995 - 1999 (2)
	2000 - 2004 (2)
	2010 - 2014 (2)
	2015 - 2019 (17)
	2020 - 2024 (23)

Enzyme Classification Name

Hydrolases (15)

Membrane Protein Annotation

	OPM (3)
	mpstruc (2)
	PDBTM (2)

Symmetry Type

	Asymmetric (21)
	Cyclic (22)
	Icosahedral (3)

SCOP Classification

	All alpha proteins (6)
	Alpha and beta proteins (a/b) (6)

AllSelected

1 to 25 of 46 Structures

Page 1 of 2

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1EXN \| pdb_00001exn	Download File View File

T5 5'-EXONUCLEASE

Ceska, T.A., Sayers, J.R., Stier, G., Suck, D.

(1996) Nature 382: 90-93

Released	1997-07-07
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Tequintavirus T5
Macromolecule	5'-EXONUCLEASE (protein)

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1UT5 \| pdb_00001ut5	Download File View File

Divalent metal ions (manganese) bound to T5 5'-exonuclease

Ceska, T.A., Sayers, J.R., Suck, D.

(2004) Nat Struct Mol Biol 11: 450

Released	2004-02-05
Method	X-RAY DIFFRACTION 2.75 Å
Organisms	Tequintavirus T5
Macromolecule	EXODEOXYRIBONUCLEASE (protein)
Unique Ligands	MN

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1UT8 \| pdb_00001ut8	Download File View File

Divalent metal ions (zinc) bound to T5 5'-exonuclease

Ceska, T.A., Sayers, J.R., Suck, D.

(2004) Nat Struct Mol Biol 11: 450

Released	2004-02-05
Method	X-RAY DIFFRACTION 2.75 Å
Organisms	Tequintavirus T5
Macromolecule	EXODEOXYRIBONUCLEASE (protein)
Unique Ligands	ZN

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1XO1 \| pdb_00001xo1	Download File View File

T5 5'-EXONUCLEASE MUTANT K83A

Ceska, T.A., Suck, D., Sayers, J.R.

(1999) Proc Natl Acad Sci U S A 96: 38-43

Released	1999-04-02
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Tequintavirus T5
Macromolecule	5'-EXONUCLEASE (protein)

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2MXZ \| pdb_00002mxz	Download File View File

Bacteriophage T5 l-alanoyl-d-glutamate peptidase comlpex with Zn2+ (Endo T5-ZN2+)

Prokhorov, D.A., Mikoulinskaia, G.V., Kutyshenko, V.P.

(2015) RSC Adv 5: 41041-41049

Released	2015-02-11
Method	SOLUTION NMR
Organisms	Tequintavirus T5
Macromolecule	L-alanyl-D-glutamate peptidase (protein)
Unique Ligands	ZN

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4BG7 \| pdb_00004bg7	Download File View File

Bacteriophage T5 Homolog of the Eukaryotic Transcription Coactivator PC4 Implicated in Recombination-Dependent DNA Replication

Steigemann, B., Schulz, A., Hinrichs, W., Werten, S.

(2013) J Mol Biology 425: 4125

Released	2013-09-11
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Tequintavirus T5
Macromolecule	PUTATIVE TRANSCRIPTIONAL COACTIVATOR P15 (protein)

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4JMQ \| pdb_00004jmq	Download File View File

Crystal structure of pb9: The Dit of bacteriophage T5.

Flayhan, A., Vellieux, F.M.D., Girard, E., Maury, O., Boulanger, P., Breyton, C.

(2014) J Virol 88: 820-828

Released	2013-11-06
Method	X-RAY DIFFRACTION 1.895 Å
Organisms	Tequintavirus T5
Macromolecule	Bacteriophage T5 distal tail protein (protein)

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4UW7 \| pdb_00004uw7	Download File View File

Structure of the carboxy-terminal domain of the bacteriophage T5 L- shaped tail fiber without its intra-molecular chaperone domain

Garcia-Doval, C., Luque, D., Caston, J.R., Otero, J.M., Llamas-Saiz, A.L., Boulanger, P., van Raaij, M.J.

(2015) Viruses 7: 6424-6440

Released	2015-08-05
Method	X-RAY DIFFRACTION 2.52 Å
Organisms	Tequintavirus T5
Macromolecule	L-SHAPED TAIL FIBER PROTEIN (protein)
Unique Ligands	GOL

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4UW8 \| pdb_00004uw8	Download File View File

Structure of the carboxy-terminal domain of the bacteriophage T5 L- shaped tail fiber with its intra-molecular chaperone domain

Garcia-Doval, C., Luque, D., Caston, J.R., Otero, J.M., Llamas-Saiz, A.L., Boulanger, P., van Raaij, M.J.

(2015) Viruses 7: 6424-6440

Released	2015-08-05
Method	X-RAY DIFFRACTION 2.52 Å
Organisms	Tequintavirus T5
Macromolecule	L-SHAPED TAIL FIBER PROTEIN (protein)
Unique Ligands	FLC

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5AQ5 \| pdb_00005aq5	Download File View File

Structure of the Carboxy-Terminal Domain of the Bacteriophage T5 L- Shaped Tail Fibre

Garcia-Doval, C., Granell, M., van Raaij, M.J.

(2015) Viruses 7: 6424-6440

Released	2015-12-16
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Tequintavirus T5
Macromolecule	L-SHAPED TAIL FIBER PROTEIN PB8 (protein)

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5HML \| pdb_00005hml	Download File View File

Crystal Structure of T5 D15 Protein Co-crystallized with Metal Ions

Flemming, C.S., Feng, M., Sedelnikova, S.E., Zhang, J., Rafferty, J.B., Sayers, J.R., Artymiuk, P.J.

(2016) Nat Struct Mol Biol 23: 640-646

Released	2016-06-01
Method	X-RAY DIFFRACTION 1.482 Å
Organisms	Tequintavirus T5
Macromolecule	Exodeoxyribonuclease (protein)
Unique Ligands	B3P, CL, EDO, IOD, MG

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5HMM \| pdb_00005hmm	Download File View File

Crystal Structure of T5 D15 Protein Co-crystallized with Metal Ions

Flemming, C.S., Sedelnikova, S.E., Rafferty, J.B., Sayers, J.R., Artymiuk, P.J.

(2016) Nat Struct Mol Biol 23: 640-646

Released	2016-06-01
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Tequintavirus T5
Macromolecule	Exodeoxyribonuclease (protein)
Unique Ligands	CL, EDO, MG

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5HNK \| pdb_00005hnk	Download File View File

Crystal structure of T5Fen in complex intact substrate and metal ions.

Almalki, F.A., Feng, M., Zhang, J., Sedelnikova, S.E., Rafferty, J.B., Sayers, J.R., Artymiuk, P.J.

(2016) Nat Struct Mol Biol 23: 640-646

Released	2016-06-01
Method	X-RAY DIFFRACTION 2.22 Å
Organisms	Tequintavirus T5 synthetic construct
Macromolecule	Exodeoxyribonuclease (protein) DNA (5'-D(APAPAPAPGPCPGPTPAPCPGPC)-3') (nucleic acid)
Unique Ligands	GOL, K, MG

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5HP4 \| pdb_00005hp4	Download File View File

Crystal structure bacteriohage T5 D15 flap endonuclease (D155K) pseudo-enzyme-product complex with DNA and metal ions

Almalki, F.A., Zhang, J., Sedelnikova, S.E., Rafferty, J.B., Sayers, J.R., Artymiuk, P.A.

(2016) Nat Struct Mol Biol 23: 640-646

Released	2016-06-01
Method	X-RAY DIFFRACTION 1.86 Å
Organisms	Tequintavirus T5 synthetic construct
Macromolecule	Exodeoxyribonuclease (protein) DNA (5'-D(GPAPTPCPTPAPTPAPTPGPCPCPAPTPCPGP*G)-3') (nucleic acid)
Unique Ligands	CA, GOL, K, NA

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5LXK \| pdb_00005lxk	Download File View File

NMR structure of the C-terminal domain of the Bacteriophage T5 decoration protein pb10.

Vernhes, E., Gilquin, B., Cuniasse, P., Boulanger, P., Zinn-Justin, S.

(2017) Sci Rep 7: 41662-41662

Released	2017-08-02
Method	SOLUTION NMR
Organisms	Tequintavirus T5
Macromolecule	Decoration protein (protein)

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5LXL \| pdb_00005lxl	Download File View File

NMR structure of the N-terminal domain of the Bacteriophage T5 decoration protein pb10

Vernhes, E., Gilquin, B., Cuniasse, P., Boulanger, P., Zinn-Justin, S.

(2017) Sci Rep 7: 41662-41662

Released	2017-04-19
Method	SOLUTION NMR
Organisms	Tequintavirus T5
Macromolecule	Decoration protein (protein)

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5MF2 \| pdb_00005mf2	Download File View File

Bacteriophage T5 distal tail protein pb9 co-crystallized with Tb-Xo4

Engilberge, S., Riobe, F., Di Pietro, S., Lassalle, L., Arnaud, C.-A., Breyton, C., Madern, D., Coquelle, N., Maury, O., Girard, E.

(2017) Chem Sci 8: 5909-5917

Released	2017-09-20
Method	X-RAY DIFFRACTION 2 Å
Organisms	Tequintavirus T5
Macromolecule	Distal tail protein (protein)
Unique Ligands	7MT, CL, TB

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5NGJ \| pdb_00005ngj	Download File View File

Crystal structure of pb6, major tail tube protein of bacteriophage T5

Arnaud, C.-A., Effantin, G., Vives, C., Engilberge, S., Bacia, M., Boulanger, P., Girard, E., Schoehn, G., Breyton, C.

(2017) Nat Commun 8: 1953-1953

Released	2018-01-03
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Tequintavirus T5
Macromolecule	Tail tube protein (protein)
Unique Ligands	CL

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5TJT \| pdb_00005tjt	Download File View File

T5 bacteriophage major capsid protein - one PB8 hexon

Conway, J., Huet, A.

(2017) Sci Rep 7: 41662-41662

Released	2017-02-22
Method	ELECTRON MICROSCOPY 9 Å
Organisms	Tequintavirus T5
Macromolecule	Major capsid protein (protein)

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6F2M \| pdb_00006f2m	Download File View File

Structure of the bacteriophage T5 distal tail protein pb9 co-crystallized with 10mM Tb-Xo4

Engilberge, S., Riobe, F., Di Pietro, S., Breyton, C., Girard, E., Dumont, E., Maury, O.

(2018) Chemistry 24: 9739-9746

Released	2018-10-03
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Tequintavirus T5
Macromolecule	Distal tail protein (protein)
Unique Ligands	7MT, CL, EDO, NA, TB

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6OKB \| pdb_00006okb	Download File View File

Prohead 2 of the phage T5

Huet, A., Duda, R.L., Boulanger, P., Conway, J.F.

(2019) Proc Natl Acad Sci U S A 116: 21037-21046

Released	2019-10-02
Method	ELECTRON MICROSCOPY 6.7 Å
Organisms	Tequintavirus T5
Macromolecule	Major capsid protein (protein)

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6OMA \| pdb_00006oma	Download File View File

non-decorated head of the phage T5

Huet, A., Duda, R.L., Boulanger, P., Conway, J.F.

(2019) Proc Natl Acad Sci U S A 116: 21037-21046

Released	2019-10-02
Method	ELECTRON MICROSCOPY 7.2 Å
Organisms	Tequintavirus T5
Macromolecule	Major capsid protein (protein)

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6OMC \| pdb_00006omc	Download File View File

capsid of T5 virion

Huet, A., Duda, R.L., Boulanger, P., Conway, J.F.

(2019) Proc Natl Acad Sci U S A 116: 21037-21046

Released	2019-10-02
Method	ELECTRON MICROSCOPY 3.8 Å
Organisms	Tequintavirus T5
Macromolecule	Major capsid protein (protein)

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7QG9 \| pdb_00007qg9	Download File View File

Tail tip of siphophage T5 : common core proteins

Linares, R., Arnaud, C.A., Effantin, G., Darnault, C., Epalle, N., Boeri Erba, E., Schoehn, G., Breyton, C.

(2023) Sci Adv 9: eade9674-eade9674

Released	2022-12-21
Method	ELECTRON MICROSCOPY 3.45 Å
Organisms	Escherichia phage T5
Macromolecule	Distal tail protein (protein) L-shaped tail fiber protein p132 (protein) Minor tail protein (protein) Tail tube protein (protein)