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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Source Organism Taxonomy Name (Full Lineage) = "Staphylococcus aureus subsp. aureus str. Newman"

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Search Summary

This query matches 45 Structures.

Refinements

Structure Determination Methodology

experimental (45)

Scientific Name of Source Organism

	Staphylococcus aureus subsp. aureus str. Newman (45)
	Escherichia coli K-12 (4)
	Homo sapiens (4)
	Staphylococcus aureus (3)

Taxonomy

	Bacteria (45)
	Eukaryota (4)

Experimental Method

	X-RAY DIFFRACTION (43)
	ELECTRON MICROSCOPY (1)
	SOLUTION NMR (1)

Polymer Entity Type

Protein (45)

Refinement Resolution (Å)

	1.0 - 1.5 (3)
	1.5 - 2.0 (11)
	2.0 - 2.5 (19)
	2.5 - 3.0 (8)
	3.0 - 3.5 (1)
	3.5 - 4.0 (1)
	4.0 - 4.5 (1)

Release Date

	2005 - 2009 (7)
	2010 - 2014 (21)
	2015 - 2019 (12)
	2020 - 2024 (5)

Enzyme Classification Name

	Lyases (13)
	Hydrolases (5)
	Transferases (5)
	Oxidoreductases (4)
	Ligases (2)
	Isomerases (1)

Membrane Protein Annotation

	mpstruc (4)
	OPM (1)

Symmetry Type

	Asymmetric (26)
	Cyclic (15)
	Dihedral (4)

SCOP Classification

	All alpha proteins (10)
	Alpha and beta proteins (a/b) (13)
	Artifacts (9)
	All beta proteins (2)
	Alpha and beta proteins (a+b) (2)

AllSelected

1 to 25 of 45 Structures

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2K3U \| pdb_00002k3u	Download File View File

Structure of the tyrosine-sulfated C5a receptor N-terminus in complex with the immune evasion protein CHIPS.

Ippel, J.H., Bunschoten, A., Kemmink, J., Liskamp, R.

(2009) J Biological Chem 284: 12363-12372

Released	2009-03-10
Method	SOLUTION NMR
Organisms	Homo sapiens Staphylococcus aureus subsp. aureus str. Newman
Macromolecule	C5a anaphylatoxin chemotactic receptor 1 (protein) Chemotaxis inhibitory protein (protein)

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3D5R \| pdb_00003d5r	Download File View File

Crystal Structure of Efb-C (N138A) / C3d Complex

Geisbrecht, B.V.

(2008) Protein Sci 17: 1894-1906

Released	2008-09-09
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens Staphylococcus aureus subsp. aureus str. Newman
Macromolecule	Complement C3 (protein) Fibrinogen-binding protein (protein)

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3D5S \| pdb_00003d5s	Download File View File

Crystal Structure of Efb-C (R131A) / C3d Complex

Geisbrecht, B.V.

(2008) Protein Sci 17: 1894-1906

Released	2008-09-16
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens Staphylococcus aureus subsp. aureus str. Newman
Macromolecule	Complement C3 (protein) Fibrinogen-binding protein (protein)

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3HRM \| pdb_00003hrm	Download File View File

Crystal structure of Staphylococcus aureus protein SarZ in sulfenic acid form

Poor, C.B., Duguid, E., Rice, P.A., He, C.

(2009) J Biological Chem 284: 23517-23524

Released	2009-07-07
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Staphylococcus aureus subsp. aureus str. Newman
Macromolecule	HTH-type transcriptional regulator sarZ (protein)

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3HSE \| pdb_00003hse	Download File View File

Crystal structure of Staphylococcus aureus protein SarZ in reduced form

Poor, C.B., Duguid, E., Rice, P.A., He, C.

(2009) J Biological Chem 284: 23517-23524

Released	2009-07-07
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Staphylococcus aureus subsp. aureus str. Newman
Macromolecule	HTH-type transcriptional regulator sarZ (protein)

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3HSR \| pdb_00003hsr	Download File View File

Crystal structure of Staphylococcus aureus protein SarZ in mixed disulfide form

Poor, C.B., Duguid, E., Rice, P.A., He, C.

(2009) J Biological Chem 284: 23517-23524

Released	2009-07-07
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Staphylococcus aureus subsp. aureus str. Newman
Macromolecule	HTH-type transcriptional regulator sarZ (protein)
Unique Ligands	ACT, BT6, GOL

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3KM9 \| pdb_00003km9	Download File View File

Structure of complement C5 in complex with the C-terminal beta-grasp domain of SSL7

Laursen, N.S., Gordon, N., Hermans, S., Lorenz, N., Jackson, N., Wines, B., Spillner, E., Christensen, J.B., Jensen, M., Fredslund, F., Bjerre, M., Sottrup-Jensen, L., Fraser, J.D., Andersen, G.R.

(2010) Proc Natl Acad Sci U S A 107: 3681-3686

Released	2009-12-01
Method	X-RAY DIFFRACTION 4.2 Å
Organisms	Homo sapiens Staphylococcus aureus subsp. aureus str. Newman
Macromolecule	Complement C5 (protein) Staphylococcal enterotoxin-like toxin (protein)
Unique Ligands	CD, NAG
Unique branched monosaccharides	NAG

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3LHS \| pdb_00003lhs	Download File View File

Open Conformation of HtsA Complexed with Staphyloferrin A

Grigg, J.C., Murphy, M.E.P.

(2010) J Biological Chem 285: 11162-11171

Released	2010-02-09
Method	X-RAY DIFFRACTION 1.3 Å
Organisms	Staphylococcus aureus subsp. aureus str. Newman
Macromolecule	Ferrichrome ABC transporter lipoprotein (protein)
Unique Ligands	FE, GOL, SF8

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3LI2 \| pdb_00003li2	Download File View File

Closed Conformation of HtsA Complexed with Staphyloferrin A

Grigg, J.C., Murphy, M.E.P.

(2010) J Biological Chem 285: 11162-11171

Released	2010-02-09
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Staphylococcus aureus subsp. aureus str. Newman
Macromolecule	Ferrichrome ABC transporter lipoprotein (protein)
Unique Ligands	ACT, FE, SF8, ZN

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3ORQ \| pdb_00003orq	Download File View File

Crystal Structure of N5-Carboxyaminoimidazole synthetase from Staphylococcus aureus complexed with ADP

Brugarolas, P., Duguid, E.M., Zhang, W., Poor, C.B., He, C.

(2011) Acta Crystallogr D Biol Crystallogr 67: 707-715

Released	2011-07-20
Method	X-RAY DIFFRACTION 2.23 Å
Organisms	Staphylococcus aureus subsp. aureus str. Newman
Macromolecule	N5-Carboxyaminoimidazole ribonucleotide synthetase (protein)
Unique Ligands	ADP, GOL, MG, POP

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3ORR \| pdb_00003orr	Download File View File

Crystal Structure of N5-Carboxyaminoimidazole synthetase from Staphylococcus aureus

Brugarolas, P., Duguid, E.M., Zhang, W., Poor, C.B., He, C.

(2011) Acta Crystallogr D Biol Crystallogr 67: 707-715

Released	2011-07-20
Method	X-RAY DIFFRACTION 2.23 Å
Organisms	Staphylococcus aureus subsp. aureus str. Newman
Macromolecule	N5-carboxyaminoimidazole ribonucleotide synthetase (protein)

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3ORS \| pdb_00003ors	Download File View File

Crystal Structure of N5-Carboxyaminoimidazole Ribonucleotide Mutase from Staphylococcus aureus

Brugarolas, P., Duguid, E.M., Zhang, W., Poor, C.B., He, C.

(2011) Acta Crystallogr D Biol Crystallogr 67: 707-715

Released	2011-07-20
Method	X-RAY DIFFRACTION 1.45 Å
Organisms	Staphylococcus aureus subsp. aureus str. Newman
Macromolecule	N5-Carboxyaminoimidazole Ribonucleotide Mutase (protein)
Unique Ligands	SO4

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3V16 \| pdb_00003v16	Download File View File

An intramolecular pi-cation latch in phosphatidylinositol-specific phospholipase C from S.aureus controls substrate access to the active site

Goldstein, R.I., Cheng, J., Stec, B., Roberts, M.F.

(2012) Biochemistry 51: 2579-2587

Released	2012-04-04
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Staphylococcus aureus subsp. aureus str. Newman
Macromolecule	1-phosphatidylinositol phosphodiesterase (protein)
Unique Ligands	CL, INS

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3V18 \| pdb_00003v18	Download File View File

Structure of the Phosphatidylinositol-specific phospholipase C from Staphylococcus aureus

Goldstein, R.I., Cheng, J., Stec, B., Roberts, M.F.

(2012) Biochemistry 51: 2579-2587

Released	2012-04-04
Method	X-RAY DIFFRACTION 2.34 Å
Organisms	Staphylococcus aureus subsp. aureus str. Newman
Macromolecule	1-phosphatidylinositol phosphodiesterase (protein)
Unique Ligands	IPA, SO4

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3V1H \| pdb_00003v1h	Download File View File

Structure of the H258Y mutant of Phosphatidylinositol-specific phospholipase C from Staphylococcus aureus

Goldstein, R.I., Cheng, J., Stec, B., Roberts, M.F.

(2012) Biochemistry 51: 2579-2587

Released	2012-04-04
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Staphylococcus aureus subsp. aureus str. Newman
Macromolecule	1-phosphatidylinositol phosphodiesterase (protein)
Unique Ligands	ACT, INS

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4DXF \| pdb_00004dxf	Download File View File

Crystal structure of Staphylococcal Superantigen-Like protein 4

Hermans, S.J., Baker, H.M., Langley, R.J., Baker, E.N., Fraser, J.F.

(2012) Infect Immun 80: 4004-4013

Released	2012-09-19
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Staphylococcus aureus subsp. aureus str. Newman
Macromolecule	Staphylococcal enterotoxin-like toxin (protein)
Unique Ligands	CL, GOL

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4DXG \| pdb_00004dxg	Download File View File

Crystal structure of Staphylococcal Superantigen-Like protein 4 complexed with sialyl Lewis X

Hermans, S.J., Baker, H.M., Langley, R.J., Baker, E.N., Fraser, J.F.

(2012) Infect Immun 80: 4004-4013

Released	2012-09-19
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Staphylococcus aureus subsp. aureus str. Newman
Macromolecule	Staphylococcal enterotoxin-like toxin (protein)
Unique Ligands	CL, PIN
Unique branched monosaccharides	FUC, GAL, NDG, SIA

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4F2B \| pdb_00004f2b	Download File View File

Modulation of S.Aureus Phosphatidylinositol-Specific Phospholipase C Membrane Binding

Cheng, J., Goldstein, R., Stec, B., Gershenson, A., Roberts, M.F.

(2012) J Biological Chem 287: 40317-40327

Released	2012-12-12
Method	X-RAY DIFFRACTION 2.16 Å
Organisms	Staphylococcus aureus subsp. aureus str. Newman
Macromolecule	1-phosphatidylinositol phosphodiesterase (protein)
Unique Ligands	INS

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4F2T \| pdb_00004f2t	Download File View File

Modulation of S.aureus Phosphatidylinositol-Specific Phospholipase C Membrane Binding.

Cheng, J., Goldstein, R., Stec, B., Gershenson, A., Roberts, M.F.

(2012) J Biological Chem 287: 40317-40327

Released	2012-12-12
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Staphylococcus aureus subsp. aureus str. Newman
Macromolecule	1-phosphatidylinositol phosphodiesterase (protein)
Unique Ligands	ACT

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4F2U \| pdb_00004f2u	Download File View File

Structure of the N254Y/H258Y double mutant of the Phosphatidylinositol-Specific Phospholipase C from S.aureus

Cheng, J., Goldstein, R., Stec, B., Gershenson, A., Roberts, M.F.

(2012) J Biological Chem 287: 40317-40327

Released	2012-12-12
Method	X-RAY DIFFRACTION 2.19 Å
Organisms	Staphylococcus aureus subsp. aureus str. Newman
Macromolecule	1-phosphatidylinositol phosphodiesterase (protein)
Unique Ligands	EPE, SO4

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4GXO \| pdb_00004gxo	Download File View File

Crystal structure of Staphylococcus aureus protein SarZ mutant C13E

Sun, F., Ding, Y., Ji, Q., Liang, Z., Deng, X., Wong, C.C., Yi, C., Zhang, L., Xie, S., Alvarez, S., Hicks, L.M., Luo, C., Jiang, H., Lan, L., He, C.

(2012) Proc Natl Acad Sci U S A 109: 15461-15466

Released	2012-09-26
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Staphylococcus aureus subsp. aureus str. Newman
Macromolecule	MarR family regulatory protein (protein)
Unique Ligands	GOL

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4I8Y \| pdb_00004i8y	Download File View File

Structure of the unliganded N254Y/H258Y mutant of the phosphatidylinositol-specific phospholipase C from S. aureus

Goldstein, R.I., Cheng, J., Stec, B., Gershenson, A., Roberts, M.F.

(2013) J Biological Chem 288: 14863-14873

Released	2013-04-10
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Staphylococcus aureus subsp. aureus str. Newman
Macromolecule	1-phosphatidylinositol phosphodiesterase (protein)
Unique Ligands	ACT, CL

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4I90 \| pdb_00004i90	Download File View File

Structure of the N254Y/H258Y mutant of the phosphatidylinositol-specific phospholipase C from S. aureus bound to choline

Goldstein, R.I., Cheng, J., Stec, B., Gershenson, A., Roberts, M.F.

(2013) J Biological Chem 288: 14863-14873

Released	2013-04-10
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Staphylococcus aureus subsp. aureus str. Newman
Macromolecule	1-phosphatidylinositol phosphodiesterase (protein)
Unique Ligands	ACT, CHT, CL

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4I9J \| pdb_00004i9j	Download File View File

Structure of the N254Y/H258Y mutant of the phosphatidylinositol-specific phospholipase C from S. aureus bound to diC4PC

Goldstein, R.I., Cheng, J., Stec, B., Gershenson, A., Roberts, M.F.

(2013) J Biological Chem 288: 14863-14873

Released	2013-04-10
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Staphylococcus aureus subsp. aureus str. Newman
Macromolecule	1-phosphatidylinositol phosphodiesterase (protein)
Unique Ligands	ACT, XP5

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4I9M \| pdb_00004i9m	Download File View File

Structure of the N254Y/H258Y mutant of the phosphatidylinositol-specific phospholipase C from Staphylococcus aureus bound to HEPES

Goldstein, R.I., Cheng, J., Stec, B., Gershenson, A., Roberts, M.F.

(2013) J Biological Chem 288: 14863-14873

Released	2013-04-10
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Staphylococcus aureus subsp. aureus str. Newman
Macromolecule	1-phosphatidylinositol phosphodiesterase (protein)
Unique Ligands	EPE, SO4

1 to 25 of 45 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

2K3U | pdb_00002k3u

3D5R | pdb_00003d5r

3D5S | pdb_00003d5s

3HRM | pdb_00003hrm

3HSE | pdb_00003hse

3HSR | pdb_00003hsr

3KM9 | pdb_00003km9

3LHS | pdb_00003lhs

3LI2 | pdb_00003li2

3ORQ | pdb_00003orq

3ORR | pdb_00003orr

3ORS | pdb_00003ors

3V16 | pdb_00003v16

3V18 | pdb_00003v18

3V1H | pdb_00003v1h

4DXF | pdb_00004dxf

4DXG | pdb_00004dxg

4F2B | pdb_00004f2b

4F2T | pdb_00004f2t

4F2U | pdb_00004f2u

4GXO | pdb_00004gxo

4I8Y | pdb_00004i8y

4I90 | pdb_00004i90

4I9J | pdb_00004i9j

4I9M | pdb_00004i9m