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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Source Organism Taxonomy Name (Full Lineage) = "Oryctolagus cuniculus"

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Search Summary

This query matches 1,331 Structures.

Refinements

Structure Determination Methodology

experimental (1,331)

Scientific Name of Source Organism

	Oryctolagus cuniculus (1,331)
	Homo sapiens (265)
	Mus musculus (47)
	Gallus gallus (44)
	synthetic construct (27)
	Bos taurus (26)
	Human immunodeficiency virus 1 (25)
	Amanita phalloides (23)
	Saccharomyces cerevisiae (21)
	Severe acute respiratory syndrome coronavirus 2 (15)

More...

Taxonomy

	Eukaryota (1,331)
	Riboviria (98)
	Bacteria (42)
	other sequences (27)
	Archaea (9)
	Eukaryota (eukaryotes) (9)
	Duplodnaviria (5)
	unclassified sequences (4)
	Monodnaviria (1)

Experimental Method

	X-RAY DIFFRACTION (790)
	ELECTRON MICROSCOPY (513)
	SOLUTION NMR (23)
	ELECTRON CRYSTALLOGRAPHY (3)
	SOLID-STATE NMR (2)
	FIBER DIFFRACTION (1)

Polymer Entity Type

	Protein (1,331)
	RNA (139)

Refinement Resolution (Å)

	1.0 - 1.5 (26)
	1.5 - 2.0 (208)
	2.0 - 2.5 (317)
	2.5 - 3.0 (226)
	3.0 - 3.5 (222)
	3.5 - 4.0 (149)
	4.0 - 4.5 (43)
	> 4.5 (114)

Release Date

	1985 - 1989 (3)
	1990 - 1994 (18)
	1995 - 1999 (54)
	2000 - 2004 (115)
	2005 - 2009 (180)
	2010 - 2014 (228)
	2015 - 2019 (275)
	2020 - 2024 (422)
	2025 - 2029 (36)

Enzyme Classification Name

	Hydrolases (404)
	Transferases (340)
	Lyases (149)
	Isomerases (101)
	Translocases (79)
	Oxidoreductases (46)
	Ligases (1)

Membrane Protein Annotation

	PDBTM (161)
	MemProtMD (144)
	OPM (129)
	mpstruc (113)

Symmetry Type

	Asymmetric (752)
	Cyclic (477)
	Dihedral (89)
	Helical (63)
	Tetrahedral (1)

SCOP Classification

	Alpha and beta proteins (a/b) (468)
	Low resolution protein structures (11)
	All beta proteins (100)
	Alpha and beta proteins (a+b) (130)
	All alpha proteins (53)
	Membrane and cell surface proteins and peptides (41)
	Artifacts (26)
	Coiled coil proteins (3)
	Peptides (6)
	Small proteins (6)

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AllSelected

1 to 25 of 1,331 Structures

Page 1 of 54

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1A03 \| pdb_00001a03	Download File View File

THE THREE-DIMENSIONAL STRUCTURE OF CA2+-BOUND CALCYCLIN: IMPLICATIONS FOR CA2+-SIGNAL TRANSDUCTION BY S100 PROTEINS, NMR, 20 STRUCTURES

Sastry, M., Ketchem, R.R., Crescenzi, O., Weber, C., Lubienski, M.J., Hidaka, H., Chazin, W.J.

(1998) Structure 6: 223-231

Released	1999-03-02
Method	SOLUTION NMR
Organisms	Oryctolagus cuniculus
Macromolecule	CALCYCLIN (RABBIT, CA2+) (protein)

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1A21 \| pdb_00001a21	Download File View File

TISSUE FACTOR (TF) FROM RABBIT

Muller, Y.A., De Vos, A.M.

(1998) Protein Sci 7: 1106-1115

Released	1998-05-27
Method	X-RAY DIFFRACTION 2.35 Å
Organisms	Oryctolagus cuniculus
Macromolecule	TISSUE FACTOR (protein)

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1A2X \| pdb_00001a2x	Download File View File

COMPLEX OF TROPONIN C WITH A 47 RESIDUE (1-47) FRAGMENT OF TROPONIN I

Vassylyev, D.G., Takeda, S., Wakatsuki, S., Maeda, K., Maeda, Y.

(1998) Proc Natl Acad Sci U S A 95: 4847-4852

Released	1998-07-15
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Oryctolagus cuniculus
Macromolecule	TROPONIN C (protein) TROPONIN I (protein)
Unique Ligands	CA

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1A49 \| pdb_00001a49	Download File View File

BIS MG-ATP-K-OXALATE COMPLEX OF PYRUVATE KINASE

Larsen, T.M., Benning, M.M., Rayment, I., Reed, G.H.

(1998) Biochemistry 37: 6247-6255

Released	1999-04-20
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Oryctolagus cuniculus
Macromolecule	PYRUVATE KINASE (protein)
Unique Ligands	ATP, K, MG, OXL

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1A5U \| pdb_00001a5u	Download File View File

PYRUVATE KINASE COMPLEX WITH BIS MG-ATP-NA-OXALATE

Larsen, T.M., Benning, M.M., Rayment, I., Reed, G.H.

(1998) Biochemistry 37: 6247-6255

Released	1999-03-02
Method	X-RAY DIFFRACTION 2.35 Å
Organisms	Oryctolagus cuniculus
Macromolecule	PYRUVATE KINASE (protein)
Unique Ligands	ATP, MG, NA, OXL

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1A8I \| pdb_00001a8i	Download File View File

SPIROHYDANTOIN INHIBITOR OF GLYCOGEN PHOSPHORYLASE

Gregoriou, M., Noble, M.E.M., Watson, K.A., Garman, E.F., Krulle, T.M., De La Fuente, C., Fleet, G.W.J., Oikonomakos, N.G., Johnson, L.N.

(1998) Protein Sci 7: 915-927

Released	1998-07-01
Method	X-RAY DIFFRACTION 1.78 Å
Organisms	Oryctolagus cuniculus
Macromolecule	GLYCOGEN PHOSPHORYLASE B (protein)
Unique Ligands	GLS

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1A8Y \| pdb_00001a8y	Download File View File

CRYSTAL STRUCTURE OF CALSEQUESTRIN FROM RABBIT SKELETAL MUSCLE SARCOPLASMIC RETICULUM AT 2.4 A RESOLUTION

Wang, S., Trumble, W.R., Liao, H., Wesson, C.R., Dunker, A.K., Kang, C.

(1998) Nat Struct Biol 5: 476-483

Released	1999-03-30
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Oryctolagus cuniculus
Macromolecule	CALSEQUESTRIN (protein)

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1ABB \| pdb_00001abb	Download File View File

CONTROL OF PHOSPHORYLASE B CONFORMATION BY A MODIFIED COFACTOR: CRYSTALLOGRAPHIC STUDIES ON R-STATE GLYCOGEN PHOSPHORYLASE RECONSTITUTED WITH PYRIDOXAL 5'-DIPHOSPHATE

Leonidas, D.D., Oikonomakos, N.G., Papageorgiou, A.C., Acharya, K.R., Barford, D., Johnson, L.N.

(1992) Protein Sci 1: 1112-1122

Released	1993-10-31
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Oryctolagus cuniculus
Macromolecule	GLYCOGEN PHOSPHORYLASE B (protein)
Unique Ligands	IMP, PDP, SO4

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1ADO \| pdb_00001ado	Download File View File

FRUCTOSE 1,6-BISPHOSPHATE ALDOLASE FROM RABBIT MUSCLE

Blom, N.S., Sygusch, J.

(1997) Nat Struct Biol 4: 36-39

Released	1997-12-24
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Oryctolagus cuniculus
Macromolecule	ALDOLASE (protein)
Unique Ligands	13P, SO4

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1AQF \| pdb_00001aqf	Download File View File

PYRUVATE KINASE FROM RABBIT MUSCLE WITH MG, K, AND L-PHOSPHOLACTATE

Larsen, T.M., Benning, M.M., Wesenberg, G.E., Rayment, I., Reed, G.H.

(1997) Arch Biochem Biophys 345: 199-206

Released	1998-09-16
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Oryctolagus cuniculus
Macromolecule	PYRUVATE KINASE (protein)
Unique Ligands	K, MG, PEQ

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1ATN \| pdb_00001atn	Download File View File

Atomic structure of the actin:DNASE I complex

Kabsch, W., Mannherz, H.G., Suck, D., Pai, E., Holmes, K.C.

(1990) Nature 347: 37-44

Released	1992-07-15
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Bos taurus Oryctolagus cuniculus
Macromolecule	ACTIN (protein) DEOXYRIBONUCLEASE I (protein)
Unique Ligands	ATP, CA
Unique branched monosaccharides	BMA, NAG

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1AXR \| pdb_00001axr	Download File View File

COOPERATIVITY BETWEEN HYDROGEN-BONDING AND CHARGE-DIPOLE INTERACTIONS IN THE INHIBITION OF BETA-GLYCOSIDASES BY AZOLOPYRIDINES: EVIDENCE FROM A STUDY WITH GLYCOGEN PHOSPHORYLASE B

Oikonomakos, N.G., Heightman, T.D.

(1998) Helvetica Chim Acta 81: 853-864

Released	1998-01-28
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Oryctolagus cuniculus
Macromolecule	GLYCOGEN PHOSPHORYLASE (protein)
Unique Ligands	HTP, PLP, PO4

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1B4D \| pdb_00001b4d	Download File View File

AMIDOCARBAMATE INHIBITOR OF GLYCOGEN PHOSPHORYLASE

Tsitsanou, K.E., Oikonomakos, N.G., Zographos, S.E., Skamnaki, V.T., Gregoriou, M., Watson, K.A., Johnson, L.N., Fleet, G.W.J.

(1999) Protein Sci 8: 741-749

Released	1998-12-23
Method	X-RAY DIFFRACTION 2 Å
Organisms	Oryctolagus cuniculus
Macromolecule	PROTEIN (GLYCOGEN PHOSPHORYLASE B) (protein)
Unique Ligands	CRA, IMP, PLP

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1BK4 \| pdb_00001bk4	Download File View File

CRYSTAL STRUCTURE OF RABBIT LIVER FRUCTOSE-1,6-BISPHOSPHATASE AT 2.3 ANGSTROM RESOLUTION

Ghosh, D., Weeks, C.M., Erman, M., Roszak, A.W., Kaiser, R., Jornvall, H.

(1999) Acta Crystallogr D Biol Crystallogr 55: 93-102

Released	1998-07-22
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Oryctolagus cuniculus
Macromolecule	PROTEIN (FRUCTOSE-1,6-BISPHOSPHATASE) (protein)
Unique Ligands	MG, SO4

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1BX3 \| pdb_00001bx3	Download File View File

EFFECTS OF COMMONLY USED CRYOPROTECTANTS ON GLYCOGEN PHOSPHORYLASE ACTIVITY AND STRUCTURE

Tsitsanou, K.E., Oikonomakos, N.G., Zographos, S.E., Skamnaki, V.T., Gregoriou, M., Watson, K.A., Johnson, L.N., Fleet, G.W.J.

(1999) Protein Sci 8: 741-749

Released	1999-10-21
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Oryctolagus cuniculus
Macromolecule	PROTEIN (GLYCOGEN PHOSPHORYLASE B) (protein)
Unique Ligands	PLP

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1C44 \| pdb_00001c44	Download File View File

STEROL CARRIER PROTEIN 2 (SCP2) FROM RABBIT

Choinowski, T., Hauser, H., Piontek, K.

(2000) Biochemistry 39: 1897-1902

Released	2000-08-07
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Oryctolagus cuniculus
Macromolecule	PROTEIN (STEROL CARRIER PROTEIN 2) (protein)

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1C47 \| pdb_00001c47	Download File View File

BINDING DRIVEN STRUCTURAL CHANGES IN CRYSTALINE PHOSPHOGLUCOMUTASE ASSOCIATED WITH CHEMICAL REACTION

Baranidharan, S., Ray Jr., W.J.

To be published

Released	1999-08-13
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Oryctolagus cuniculus
Macromolecule	ALPHA-D-GLUCOSE 1,6-BISPHOSPHATE PHOSPHOTRANSFERASE (protein)
Unique Ligands	CD, G16

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1C4G \| pdb_00001c4g	Download File View File

PHOSPHOGLUCOMUTASE VANADATE BASED TRANSITION STATE ANALOG COMPLEX

Baranidharan, S., Ray Jr., W.J.

To be published

Released	1999-08-27
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Oryctolagus cuniculus
Macromolecule	PROTEIN (ALPHA-D-GLUCOSE 1-PHOSPHATE PHOSPHOGLUCOMUTASE) (protein)
Unique Ligands	CO, VG1

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1C50 \| pdb_00001c50	Download File View File

IDENTIFICATION AND STRUCTURAL CHARACTERIZATION OF A NOVEL ALLOSTERIC BINDING SITE OF GLYCOGEN PHOSPHORYLASE B

Oikonomakos, N.G., Skamnaki, V.T., Tsitsanou, K.E., Gavalas, N.G., Johnson, L.N.

(2000) Structure 8: 575-584

Released	1999-12-23
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Oryctolagus cuniculus
Macromolecule	PROTEIN (GLYCOGEN PHOSPHORYLASE) (protein)
Unique Ligands	CHI, PLP

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1C8K \| pdb_00001c8k	Download File View File

FLAVOPIRIDOL INHIBITS GLYCOGEN PHOSPHORYLASE BY BINDING AT THE INHIBITOR SITE

Oikonomakos, N.G., Zographos, S.E., Skamnaki, V.T., Tsitsanou, K.E., Johnson, L.N.

(2000) J Biological Chem 275: 34566-34573

Released	2000-05-24
Method	X-RAY DIFFRACTION 1.76 Å
Organisms	Oryctolagus cuniculus
Macromolecule	PROTEIN (GLYCOGEN PHOSPHORYLASE) (protein)
Unique Ligands	CPB, PLP

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1C8L \| pdb_00001c8l	Download File View File

SYNERGISTIC INHIBITION OF GLYCOGEN PHOSPHORYLASE A BY A POTENTIAL ANTIDIABETIC DRUG AND CAFFEINE

Tsitsanou, K.E., Skamnaki, V.T., Oikonomakos, N.G.

(2000) Arch Biochem Biophys 384: 245-254

Released	2000-05-31
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Oryctolagus cuniculus
Macromolecule	PROTEIN (GLYCOGEN PHOSPHORYLASE) (protein)
Unique Ligands	BIN, CFF, GOL, PLP

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1CJ0 \| pdb_00001cj0	Download File View File

CRYSTAL STRUCTURE OF RABBIT CYTOSOLIC SERINE HYDROXYMETHYLTRANSFERASE AT 2.8 ANGSTROM RESOLUTION

Scarsdale, J.N., Kazanina, G., Radaev, S., Schirch, V., Wright, H.T.

(1999) Biochemistry 38: 8347-8358

Released	1999-05-06
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Oryctolagus cuniculus
Macromolecule	PROTEIN (SERINE HYDROXYMETHYLTRANSFERASE) (protein)
Unique Ligands	PLP