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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Source Organism Taxonomy Name (Full Lineage) = "Escherichia coli"

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Search Summary

This query matches 13,832 Structures.

Refinements

Structure Determination Methodology

experimental (13,832)

Scientific Name of Source Organism

	Escherichia coli (8,113)
	Escherichia coli K-12 (4,549)
	Homo sapiens (757)
	synthetic construct (556)
	Escherichia coli O157:H7 (310)
	Escherichia coli BL21(DE3) (291)
	Thermus thermophilus HB8 (261)
	Mus musculus (177)
	Escherichia coli str. K-12 substr. MG1655 (97)
	Lama glama (95)

More...

Taxonomy

	Bacteria (13,832)
	Eukaryota (1,254)
	other sequences (561)
	Duplodnaviria (208)
	Riboviria (83)
	Archaea (61)
	Monodnaviria (20)
	unclassified sequences (12)
	Eukaryota (eukaryotes) (10)
	unclassified bacterial viruses (10)

More...

Experimental Method

	X-RAY DIFFRACTION (10,779)
	ELECTRON MICROSCOPY (2,409)
	SOLUTION NMR (621)
	SOLID-STATE NMR (15)
	NEUTRON DIFFRACTION (12)
	SOLUTION SCATTERING (7)
	ELECTRON CRYSTALLOGRAPHY (4)

Polymer Entity Type

	Protein (13,753)
	RNA (1,527)
	DNA (1,109)
	NA-hybrid (8)

Refinement Resolution (Å)

	0.5 - 1.0 (43)
	1.0 - 1.5 (746)
	1.5 - 2.0 (3,319)
	2.0 - 2.5 (3,494)
	2.5 - 3.0 (2,535)
	3.0 - 3.5 (1,575)
	3.5 - 4.0 (736)
	4.0 - 4.5 (297)
	> 4.5 (454)

Release Date

	1975 - 1979 (1)
	1980 - 1984 (2)
	1985 - 1989 (11)
	1990 - 1994 (200)
	1995 - 1999 (869)
	2000 - 2004 (1,772)
	2005 - 2009 (2,124)
	2010 - 2014 (2,387)
	2015 - 2019 (2,542)
	2020 - 2024 (3,695)

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Enzyme Classification Name

	Transferases (2,553)
	Hydrolases (2,949)
	Oxidoreductases (1,296)
	Lyases (730)
	Isomerases (552)
	Translocases (274)
	Ligases (443)

Membrane Protein Annotation

	PDBTM (1,497)
	mpstruc (1,039)
	MemProtMD (1,110)
	OPM (766)

Symmetry Type

	Asymmetric (8,113)
	Cyclic (4,644)
	Dihedral (1,530)
	Helical (66)
	Octahedral (58)
	Tetrahedral (33)
	Icosahedral (5)

SCOP Classification

	Alpha and beta proteins (a/b) (3,431)
	Alpha and beta proteins (a+b) (1,702)
	All beta proteins (1,218)
	All alpha proteins (1,083)
	Artifacts (867)
	Multi-domain proteins (alpha and beta) (555)
	Membrane and cell surface proteins and peptides (344)
	Small proteins (114)
	Low resolution protein structures (25)
	Coiled coil proteins (21)

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AllSelected

1 to 25 of 13,832 Structures

Page 1 of 554

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11AS \| pdb_000011as	Download File View File

ASPARAGINE SYNTHETASE MUTANT C51A, C315A COMPLEXED WITH L-ASPARAGINE

Nakatsu, T., Kato, H., Oda, J.

(1998) Nat Struct Biol 5: 15-19

Released	1998-12-30
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Escherichia coli K-12
Macromolecule	ASPARAGINE SYNTHETASE (protein)
Unique Ligands	ASN

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12AS \| pdb_000012as	Download File View File

ASPARAGINE SYNTHETASE MUTANT C51A, C315A COMPLEXED WITH L-ASPARAGINE AND AMP

Nakatsu, T., Kato, H., Oda, J.

(1998) Nat Struct Biol 5: 15-19

Released	1998-12-30
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Escherichia coli K-12
Macromolecule	ASPARAGINE SYNTHETASE (protein)
Unique Ligands	AMP, ASN

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148L \| pdb_0000148l	Download File View File

A COVALENT ENZYME-SUBSTRATE INTERMEDIATE WITH SACCHARIDE DISTORTION IN A MUTANT T4 LYSOZYME

Kuroki, R., Weaver, L.H., Matthews, B.W.

(1993) Science 262: 2030-2033

Released	1994-04-30
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Escherichia coli Tequatrovirus T4
Macromolecule	SUBSTRATE CLEAVED FROM CELL WALL OF ESCHERICHIA COLI (protein) T4 LYSOZYME (protein)
Unique Ligands	BME
Unique branched monosaccharides	MUB, NAG

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1A04 \| pdb_00001a04	Download File View File

THE STRUCTURE OF THE NITRATE/NITRITE RESPONSE REGULATOR PROTEIN NARL IN THE MONOCLINIC C2 CRYSTAL FORM

Baikalov, I., Schroder, I., Kaczor-Grzeskowiak, M., Cascio, D., Gunsalus, R.P., Dickerson, R.E.

(1998) Biochemistry 37: 3665-3676

Released	1998-03-18
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Escherichia coli
Macromolecule	NITRATE/NITRITE RESPONSE REGULATOR PROTEIN NARL (protein)

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1A0B \| pdb_00001a0b	Download File View File

HISTIDINE-CONTAINING PHOSPHOTRANSFER DOMAIN OF ARCB FROM ESCHERICHIA COLI

Kato, M., Mizuno, T., Shimizu, T., Hakoshima, T.

(1997) Cell 88: 717-723

Released	1998-03-18
Method	X-RAY DIFFRACTION 2.06 Å
Organisms	Escherichia coli
Macromolecule	AEROBIC RESPIRATION CONTROL SENSOR PROTEIN ARCB (protein)
Unique Ligands	ZN

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1A0F \| pdb_00001a0f	Download File View File

CRYSTAL STRUCTURE OF GLUTATHIONE S-TRANSFERASE FROM ESCHERICHIA COLI COMPLEXED WITH GLUTATHIONESULFONIC ACID

Nishida, M., Harada, S., Noguchi, S., Inoue, H., Takahashi, K., Satow, Y.

(1998) J Mol Biology 281: 135-147

Released	1999-01-13
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Escherichia coli K-12
Macromolecule	GLUTATHIONE S-TRANSFERASE (protein)
Unique Ligands	GTS

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1A0O \| pdb_00001a0o	Download File View File

CHEY-BINDING DOMAIN OF CHEA IN COMPLEX WITH CHEY

Chinardet, N., Welch, M., Mourey, L., Birck, C., Samama, J.P.

(1998) Nat Struct Biol 5: 25-29

Released	1998-12-30
Method	X-RAY DIFFRACTION 2.95 Å
Organisms	Escherichia coli
Macromolecule	CHEA (protein) CHEY (protein)
Unique Ligands	MN

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1A0P \| pdb_00001a0p	Download File View File

SITE-SPECIFIC RECOMBINASE, XERD

Subramanya, H.S., Arciszewska, L.K., Baker, R.A., Bird, L.E., Sherratt, D.J., Wigley, D.B.

(1997) EMBO J 16: 5178-5187

Released	1998-03-18
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Escherichia coli
Macromolecule	SITE-SPECIFIC RECOMBINASE XERD (protein)

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1A16 \| pdb_00001a16	Download File View File

AMINOPEPTIDASE P FROM E. COLI WITH THE INHIBITOR PRO-LEU

Wilce, M.C., Bond, C.S., Lilley, P.E., Dixon, N.E., Freeman, H.C., Guss, J.M.

(1998) Proc Natl Acad Sci U S A 95: 3472-3477

Released	1999-04-06
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Escherichia coli
Macromolecule	AMINOPEPTIDASE P (protein)
Unique Ligands	LEU, MN, PRO

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1A23 \| pdb_00001a23	Download File View File

SOLUTION NMR STRUCTURE OF REDUCED DSBA FROM ESCHERICHIA COLI, MINIMIZED AVERAGE STRUCTURE

Schirra, H.J., Renner, C., Czisch, M., Huber-Wunderlich, M., Holak, T.A., Glockshuber, R.

(1998) Biochemistry 37: 6263-6276

Released	1998-09-16
Method	SOLUTION NMR
Organisms	Escherichia coli
Macromolecule	DSBA (protein)

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1A24 \| pdb_00001a24	Download File View File

SOLUTION NMR STRUCTURE OF REDUCED DSBA FROM ESCHERICHIA COLI, FAMILY OF 20 STRUCTURES

Schirra, H.J., Renner, C., Czisch, M., Huber-Wunderlich, M., Holak, T.A., Glockshuber, R.

(1998) Biochemistry 37: 6263-6276

Released	1998-09-16
Method	SOLUTION NMR
Organisms	Escherichia coli
Macromolecule	DSBA (protein)

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1A2J \| pdb_00001a2j	Download File View File

OXIDIZED DSBA CRYSTAL FORM II

Martin, J.L., Guddat, L.W.

(1998) Structure 6: 757-767

Released	1998-09-16
Method	X-RAY DIFFRACTION 2 Å
Organisms	Escherichia coli
Macromolecule	DISULFIDE BOND FORMATION PROTEIN (protein)

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1A2L \| pdb_00001a2l	Download File View File

REDUCED DSBA AT 2.7 ANGSTROMS RESOLUTION

Martin, J.L., Guddat, L.W.

(1998) Structure 6: 757-767

Released	1998-07-08
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Escherichia coli
Macromolecule	DISULFIDE BOND FORMATION PROTEIN (protein)

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1A2M \| pdb_00001a2m	Download File View File

OXIDIZED DSBA AT 2.7 ANGSTROMS RESOLUTION, CRYSTAL FORM III

Martin, J.L., Guddat, L.W.

(1998) Structure 6: 757-767

Released	1998-07-08
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Escherichia coli
Macromolecule	DISULFIDE BOND FORMATION PROTEIN (protein)

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1A2N \| pdb_00001a2n	Download File View File

STRUCTURE OF THE C115A MUTANT OF MURA COMPLEXED WITH THE FLUORINATED ANALOG OF THE REACTION TETRAHEDRAL INTERMEDIATE

Skarzynski, T.

(1998) Biochemistry 37: 2572-2577

Released	1998-04-29
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Escherichia coli
Macromolecule	UDP-N-ACETYLGLUCOSAMINE ENOLPYRUVYL TRANSFERASE (protein)
Unique Ligands	TET

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1A3A \| pdb_00001a3a	Download File View File

CRYSTAL STRUCTURE OF IIA MANNITOL FROM ESCHERICHIA COLI

Van Montfort, R.L.M., Pijning, T., Kalk, K.H., Hangyi, I., Kouwijzer, M.L.C.E., Robillard, G.T., Dijkstra, B.W.

(1998) Structure 6: 377-388

Released	1998-08-12
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Escherichia coli K-12
Macromolecule	MANNITOL-SPECIFIC EII (protein)

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1A3G \| pdb_00001a3g	Download File View File

BRANCHED-CHAIN AMINO ACID AMINOTRANSFERASE FROM ESCHERICHIA COLI

Okada, K., Hirotsu, K., Sato, M., Hayashi, H., Kagamiyama, H.

(1997) J Biochem 121: 637-641

Released	1998-05-27
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Escherichia coli
Macromolecule	BRANCHED-CHAIN AMINO ACID AMINOTRANSFERASE (protein)
Unique Ligands	PLP

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1A40 \| pdb_00001a40	Download File View File

PHOSPHATE-BINDING PROTEIN WITH ALA 197 REPLACED WITH TRP

Ledivina, P.S., Wang, Z., Tsai, A., Koehl, E., Quiocho, F.A.

(1998) Protein Sci 7: 2550-2559

Released	1999-03-23
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Escherichia coli
Macromolecule	PHOSPHATE-BINDING PERIPLASMIC PROTEIN PRECURSOR (protein)
Unique Ligands	PO4

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1A4D \| pdb_00001a4d	Download File View File

LOOP D/LOOP E ARM OF ESCHERICHIA COLI 5S RRNA, NMR, MINIMIZED AVERAGE STRUCTURE

Dallas, A., Moore, P.B.

(1997) Structure 5: 1639-1653

Released	1998-04-29
Method	SOLUTION NMR
Organisms	Escherichia coli
Macromolecule	RNA (5'-R(GPGPCPCPGPAPUPGPGPUPAPGPUPGPUPGPGPGPGPUPC)-3') (nucleic acid) RNA (5'-R(PUPCPCPCPCPAPUPGPCPGPAPGPAPGPUPAPGPGPCP*C)-3') (nucleic acid)