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233,249 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Source Organism Taxonomy Name (Full Lineage) = "Betapolyomavirus macacae"

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Search Summary

This query matches 56 Structures.

Refinements

Structure Determination Methodology

experimental (56)

Scientific Name of Source Organism

	Betapolyomavirus macacae (53)
	synthetic construct (22)
	Homo sapiens (7)
	Mus musculus (4)
	Simian virus 40 (3)
	Neurospora crassa (1)
	Oryza sativa Japonica Group (1)

Taxonomy

	Monodnaviria (56)
	other sequences (22)
	Eukaryota (13)

Experimental Method

	X-RAY DIFFRACTION (29)
	ELECTRON MICROSCOPY (24)
	SOLUTION NMR (3)

Polymer Entity Type

	Protein (56)
	DNA (27)
	RNA (2)

Refinement Resolution (Å)

	1.0 - 1.5 (1)
	1.5 - 2.0 (8)
	2.0 - 2.5 (6)
	2.5 - 3.0 (7)
	3.0 - 3.5 (29)
	3.5 - 4.0 (1)
	> 4.5 (1)

Release Date

	1995 - 1999 (3)
	2000 - 2004 (8)
	2005 - 2009 (13)
	2010 - 2014 (6)
	2015 - 2019 (4)
	2025 - 2029 (22)

Enzyme Classification Name

	Isomerases (49)
	Hydrolases (26)

Symmetry Type

	Cyclic (36)
	Asymmetric (19)
	Helical (1)
	Icosahedral (1)

SCOP Classification

	All beta proteins (4)
	Alpha and beta proteins (a/b) (5)
	Artifacts (8)
	Alpha and beta proteins (a+b) (12)
	All alpha proteins (8)
	Small proteins (1)

AllSelected

1 to 25 of 56 Structures

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1EJL	Download File View File

MOUSE IMPORTIN ALPHA-SV40 LARGE T ANTIGEN NLS PEPTIDE COMPLEX

Fontes, M.R., Teh, T., Kobe, B.

(2000) J Mol Biology 297: 1183-1194

Released	2000-04-24
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Mus musculus Simian virus 40
Macromolecule	IMPORTIN ALPHA (protein) SV40 LARGE T ANTIGEN NLS PEPTIDE (protein)

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1GH6	Download File View File

RETINOBLASTOMA POCKET COMPLEXED WITH SV40 LARGE T ANTIGEN

Kim, H.Y., Cho, Y.

(2001) EMBO J 20: 295-304

Released	2001-11-15
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Betapolyomavirus macacae Homo sapiens
Macromolecule	Large T antigen (protein) Retinoblastoma-associated protein (protein)

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1N25	Download File View File

Crystal structure of the SV40 Large T antigen helicase domain

Li, D., Zhao, R., Lilyestrom, W., Gai, D., Zhang, R., DeCaprio, J.A., Fanning, E., Jochimiak, A., Szakonyi, G., Chen, X.S.

(2003) Nature 423: 512-518

Released	2003-06-03
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Betapolyomavirus macacae
Macromolecule	Large T Antigen (protein)
Unique Ligands	ZN

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1Q1S	Download File View File

Mouse Importin alpha- phosphorylated SV40 CN peptide complex

Fontes, M.R.M., Teh, T., Toth, G., John, A., Pavo, I., Jans, D.A., Kobe, B.

(2003) Biochem J 375: 339-349

Released	2004-03-30
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Mus musculus Simian virus 40
Macromolecule	Importin alpha-2 subunit (protein) Large T antigen (protein)

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1Q1T	Download File View File

Mouse Importin alpha: non-phosphorylated SV40 CN peptide complex

Fontes, M.R.M., Teh, T., Toth, G., John, A., Pavo, I., Jans, D.A., Kobe, B.

(2003) Biochem J 375: 339-349

Released	2004-03-30
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Mus musculus Simian virus 40
Macromolecule	Importin alpha-2 subunit (protein) Large T antigen (protein)

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1SVA	Download File View File

SIMIAN VIRUS 40

Stehle, T., Gamblin, S.J., Harrison, S.C.

(1996) Structure 4: 165-182

Released	1996-06-10
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Betapolyomavirus macacae
Macromolecule	SIMIAN VIRUS 40 (protein)

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1SVL	Download File View File

Co-crystal structure of SV40 large T antigen helicase domain and ADP

Gai, D., Zhao, R., Finkielstein, C.V., Chen, X.S.

(2004) Cell 119: 47-60

Released	2004-10-19
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Betapolyomavirus macacae
Macromolecule	large T antigen (protein)
Unique Ligands	ADP, MG, ZN

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1SVM	Download File View File

Co-crystal structure of SV40 large T antigen helicase domain and ATP

Gai, D., Zhao, R., Finkielstein, C.V., Chen, X.S.

(2004) Cell 119: 47-60

Released	2004-10-19
Method	X-RAY DIFFRACTION 1.94 Å
Organisms	Betapolyomavirus macacae
Macromolecule	large T antigen (protein)
Unique Ligands	ATP, MG, ZN

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1SVO	Download File View File

Structure of SV40 large T antigen helicase domain

Gai, D., Zhao, R., Finkielstein, C.V., Chen, X.S.

(2004) Cell 119: 47-60

Released	2004-10-19
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Betapolyomavirus macacae
Macromolecule	large T antigen (protein)
Unique Ligands	ZN

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1TBD	Download File View File

SOLUTION STRUCTURE OF THE ORIGIN DNA BINDING DOMAIN OF SV40 T-ANTIGEN, NMR, MINIMIZED AVERAGE STRUCTURE

Luo, X., Sanford, D.G., Bullock, P.A., Bachovchin, W.W.

(1996) Nat Struct Biol 3: 1034-1039

Released	1997-03-12
Method	SOLUTION NMR
Organisms	Betapolyomavirus macacae
Macromolecule	SV40 T-ANTIGEN (protein)

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1Z1D	Download File View File

Structural Model for the interaction between RPA32 C-terminal domain and SV40 T antigen origin binding domain.

Arunkumar, A.I., Klimovich, V., Jiang, X., Ott, R.D., Mizoue, L., Fanning, E., Chazin, W.J.

(2005) Nat Struct Mol Biol 12: 332-339

Released	2005-05-17
Method	SOLUTION NMR
Organisms	Betapolyomavirus macacae Homo sapiens
Macromolecule	Large T antigen (protein) Replication protein A 32 kDa subunit (protein)

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2FUF	Download File View File

Crystal structure of the SV40 large T antigen origin-binding domain

Meinke, G., Bullock, P.A., Bohm, A.

(2006) J Virol 80: 4304-4312

Released	2006-08-22
Method	X-RAY DIFFRACTION 1.45 Å
Organisms	Betapolyomavirus macacae
Macromolecule	Large T antigen (protein)
Unique Ligands	FLC

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2H1L	Download File View File

The Structure of the Oncoprotein SV40 Large T Antigen and p53 Tumor Suppressor Complex

Lilyestrom, W., Klein, M.G., Chen, X.S.

(2006) Genes Dev 20: 2373-2382

Released	2006-09-12
Method	X-RAY DIFFRACTION 3.16 Å
Organisms	Betapolyomavirus macacae Homo sapiens
Macromolecule	Cellular tumor antigen p53 (protein) Large T antigen (protein)
Unique Ligands	ZN

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2IF9	Download File View File

Crystal Structure of SV40 T-antigen origin binding domain disulfide-linked dimer

Meinke, G., Bullock, P.A., Bohm, A.

(2007) PLoS Biol 5: e23-e23

Released	2007-02-13
Method	X-RAY DIFFRACTION 2.586 Å
Organisms	Betapolyomavirus macacae
Macromolecule	Large T antigen (protein)

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2IPR	Download File View File

Origin binding domain of the SV40 large T antigen (residues 131-259). P21 crystal form

Martynowski, D., Bochkareva, E., Bochkarev, A.

(2006) EMBO J 25: 5961-5969

Released	2006-12-12
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Betapolyomavirus macacae
Macromolecule	large T antigen (protein)

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2ITJ	Download File View File

Origin binding domain of the SV40 large T antigen (residues 131-259). P212121 crystal form

Martynowski, D., Bochkareva, E., Bochkarev, A.

(2006) EMBO J 25: 5961-5969

Released	2006-12-12
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Betapolyomavirus macacae
Macromolecule	large T antigen (protein)

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2ITL	Download File View File

The origin binding domain of the SV40 large T antigen bound to the functional pen palindrome DNA (23 bp)

Bochkareva, E., Seitova, A., Bochkarev, A.

(2006) EMBO J 25: 5961-5969

Released	2006-12-12
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Betapolyomavirus macacae
Macromolecule	large T antigen (protein) 24-nt PEN element of the SV40 DNA origin (nucleic acid)

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2NL8	Download File View File

The origin binding domain of the SV40 large T antigen bound non specifically to a 17 bp palindrome DNA (sites 1 and 3)

Martynowski, D., Bochkareva, E., Bochkarev, A.

(2006) EMBO J 25: 5961-5969

Released	2006-12-12
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Betapolyomavirus macacae
Macromolecule	large T antigen (protein) 18-nt PEN element of the SV40 DNA origin (nucleic acid)

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2NTC	Download File View File

Crystal Structure of sv40 large T antigen origin binding domain with DNA

Bohm, A., Meinke, G., Bullock, P.A.

(2007) PLoS Biol 5: e23-e23

Released	2007-02-13
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Betapolyomavirus macacae
Macromolecule	large T antigen (protein) 21-nt PEN element of the SV40 DNA origin (nucleic acid)

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2PF4	Download File View File

Crystal structure of the full-length simian virus 40 small t antigen complexed with the protein phosphatase 2A Aalpha subunit

Cho, U., Morrone, S., Xu, W.

(2007) PLoS Biol 5: e202-e202

Released	2007-08-07
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Betapolyomavirus macacae Mus musculus
Macromolecule	Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform (protein) Small T antigen (protein)
Unique Ligands	ZN

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2PKG	Download File View File

Structure of a complex between the A subunit of protein phosphatase 2A and the small t antigen of SV40

Jeffrey, P.D., Shi, Y.

(2007) Nat Struct Mol Biol 14: 527-534

Released	2007-05-15
Method	X-RAY DIFFRACTION 3.3 Å
Organisms	Betapolyomavirus macacae Homo sapiens
Macromolecule	Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform (protein) Small T antigen (protein)
Unique Ligands	ZN

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2TBD	Download File View File

SV40 T ANTIGEN DNA-BINDING DOMAIN, NMR, 30 STRUCTURES

Luo, X., Sanford, D.G., Bullock, P.A., Bachovchin, W.W.

(1996) Nat Struct Biol 3: 1034-1039

Released	1997-04-01
Method	SOLUTION NMR
Organisms	Betapolyomavirus macacae
Macromolecule	SV40 T ANTIGEN (protein)

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3BWQ	Download File View File

Structure of free SV40 VP1 pentamer

Neu, U., Stehle, T.

(2008) Proc Natl Acad Sci U S A 105: 5219-5224

Released	2008-03-04
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Betapolyomavirus macacae
Macromolecule	Capsid protein VP1 (protein)

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3BWR	Download File View File

SV40 VP1 pentamer in complex with GM1 oligosaccharide

Neu, U., Stehle, T.

(2008) Proc Natl Acad Sci U S A 105: 5219-5224

Released	2008-03-04
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Betapolyomavirus macacae
Macromolecule	Capsid protein VP1 (protein)
Unique Ligands	EDO
Unique branched monosaccharides	BGC, GAL, NGA, SIA