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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Gene Name = "WDR59"

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Search Summary

This query matches 17 Structures.

Refinements

Structure Determination Methodology

experimental (17)

Scientific Name of Source Organism

	Saccharomyces cerevisiae (10)
	Saccharomyces cerevisiae S288C (5)
	Homo sapiens (4)
	Komagataella pastoris (1)
	Komagataella phaffii GS115 (1)
	synthetic construct (1)

Taxonomy

	Eukaryota (17)
	other sequences (1)

Experimental Method

	X-RAY DIFFRACTION (11)
	ELECTRON MICROSCOPY (6)

Polymer Entity Type

Protein (17)

Refinement Resolution (Å)

	1.5 - 2.0 (1)
	2.0 - 2.5 (2)
	2.5 - 3.0 (2)
	3.0 - 3.5 (4)
	3.5 - 4.0 (1)
	> 4.5 (7)

Release Date

	2005 - 2009 (6)
	2010 - 2014 (5)
	2015 - 2019 (2)
	2020 - 2024 (4)

Enzyme Classification Name

	Hydrolases (5)
	Transferases (1)

Membrane Protein Annotation

mpstruc (3)

Symmetry Type

	Asymmetric (7)
	Cyclic (12)

AllSelected

1 to 17 of 17 Structures

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2PM6 \| pdb_00002pm6	Download File View File

Crystal Structure of yeast Sec13/31 edge element of the COPII vesicular coat, native version

Goldberg, J., Fath, S., Mancias, J.D., Bi, X.

(2007) Cell 129: 1325-1336

Released	2007-07-03
Method	X-RAY DIFFRACTION 2.45 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	Protein transport protein SEC13 (protein) Protein transport protein SEC31 (protein)

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2PM7 \| pdb_00002pm7	Download File View File

Crystal structure of yeast Sec13/31 edge element of the COPII vesicular coat, selenomethionine version

Goldberg, J., Fath, S., Mancias, J.D., Bi, X.

(2007) Cell 129: 1325-1336

Released	2007-07-03
Method	X-RAY DIFFRACTION 2.35 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	Protein transport protein SEC13 (protein) Protein transport protein SEC31 (protein)

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2PM9 \| pdb_00002pm9	Download File View File

Crystal structure of yeast Sec13/31 vertex element of the COPII vesicular coat

Goldberg, J., Fath, S., Mancias, J.D., Bi, X.

(2007) Cell 129: 1325-1336

Released	2007-07-03
Method	X-RAY DIFFRACTION 3.3 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	Protein transport protein SEC13 (protein) Protein transport protein SEC31 (protein)

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3BG0 \| pdb_00003bg0	Download File View File

Architecture of a Coat for the Nuclear Pore Membrane

Hoelz, A.

(2007) Cell 131: 1313-1326

Released	2008-01-01
Method	X-RAY DIFFRACTION 3.15 Å
Organisms	Homo sapiens Saccharomyces cerevisiae
Macromolecule	Nucleoporin NUP145 (protein) Protein SEC13 homolog (protein)

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3BG1 \| pdb_00003bg1	Download File View File

Architecture of a Coat for the Nuclear Pore Membrane

Hoelz, A.

(2007) Cell 131: 1313-1326

Released	2008-01-01
Method	X-RAY DIFFRACTION 3 Å
Organisms	Homo sapiens Saccharomyces cerevisiae
Macromolecule	Nucleoporin NUP145 (protein) Protein SEC13 homolog (protein)

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3IKO \| pdb_00003iko	Download File View File

Crystal structure of the heterotrimeric Sec13-Nup145C-Nup84 nucleoporin complex

Nagy, V., Hsia, K.-C., Debler, E.W., Davenport, A., Blobel, G., Hoelz, A.

(2009) Proc Natl Acad Sci U S A 106: 17693-17698

Released	2009-10-13
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	Nucleoporin NUP145C (protein) Nucleoporin NUP84 (protein) Protein transport protein SEC13 (protein)

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3MZK \| pdb_00003mzk	Download File View File

Sec13/Sec16 complex, S.cerevisiae

Whittle, J.R., Schwartz, T.U.

(2010) J Cell Biol 190: 347-361

Released	2010-08-18
Method	X-RAY DIFFRACTION 2.69 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	Protein transport protein SEC13 (protein) Protein transport protein SEC16 (protein)

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3MZL \| pdb_00003mzl	Download File View File

Sec13/Sec31 edge element, loop deletion mutant

Whittle, J.R., Schwartz, T.U.

(2010) J Cell Biol 190: 347-361

Released	2010-08-18
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	Protein transport protein SEC13 (protein) Protein transport protein SEC31 (protein)

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4BZJ \| pdb_00004bzj	Download File View File

The structure of the COPII coat assembled on membranes

Zanetti, G., Prinz, S., Daum, S., Meister, A., Schekman, R., Bacia, K., Briggs, J.A.G.

(2013) Elife 2: 00951

Released	2013-09-18
Method	ELECTRON MICROSCOPY 40 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	Protein transport protein SEC13 (protein) Protein transport protein SEC31 (protein)

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4BZK \| pdb_00004bzk	Download File View File

The structure of the COPII coat assembled on membranes

Zanetti, G., Prinz, S., Daum, S., Meister, A., Schekman, R., Bacia, K., Briggs, J.A.G.

(2013) Elife 2: 00951

Released	2013-09-18
Method	ELECTRON MICROSCOPY 40 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	Protein transport protein SEC13 (protein) Protein transport protein SEC31 (protein)

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4L9O \| pdb_00004l9o	Download File View File

Crystal Structure of the Sec13-Sec16 blade-inserted complex from Pichia pastoris

McMahon, C., Jeffrey, P.D., Hughson, F.M.

(2013) Mol Biol Cell 24: 3406-3419

Released	2013-10-02
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Komagataella pastoris Komagataella phaffii GS115
Macromolecule	Sec16,Protein transport protein SEC13 (protein)
Unique Ligands	CA, CL, EDO

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4XMM \| pdb_00004xmm	Download File View File

Structure of the yeast coat nucleoporin complex, space group C2

Stuwe, T., Correia, A.R., Lin, D.H., Paduch, M., Lu, V.T., Kossiakoff, A.A., Hoelz, A.

(2015) Science 347: 1148-1152

Released	2015-03-25
Method	X-RAY DIFFRACTION 7.384 Å
Organisms	Homo sapiens Saccharomyces cerevisiae S288C
Macromolecule	Unique protein chains: 8

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4XMN \| pdb_00004xmn	Download File View File

Structure of the yeast coat nucleoporin complex, space group P212121

Stuwe, T., Correia, A.R., Lin, D.H., Paduch, M., Lu, V.T., Kossiakoff, A.A., Hoelz, A.

(2015) Science 347: 1148-1152

Released	2015-03-25
Method	X-RAY DIFFRACTION 7.6 Å
Organisms	Saccharomyces cerevisiae S288C synthetic construct
Macromolecule	Unique protein chains: 7

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6ZG5 \| pdb_00006zg5	Download File View File

COPII on membranes, outer coat right-handed rod, class1

Zanetti, G., Hutchings, J.

(2021) Nat Commun 12: 2034-2034

Released	2021-02-17
Method	ELECTRON MICROSCOPY 40 Å
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	Protein transport protein SEC13 (protein) Protein transport protein SEC31 (protein)

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6ZG6 \| pdb_00006zg6	Download File View File

COPII on membranes, outer coat vertex

Zanetti, G., Hutchings, J.

(2021) Nat Commun 12: 2034-2034

Released	2021-02-17
Method	ELECTRON MICROSCOPY 12 Å
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	Protein transport protein SEC13 (protein) Protein transport protein SEC31 (protein)

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6ZL0 \| pdb_00006zl0	Download File View File

COPII on membranes, outer coat left-handed rod

Zanetti, G., Hutchings, J.

(2021) Nat Commun 12: 2034-2034

Released	2021-02-17
Method	ELECTRON MICROSCOPY 40 Å
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	Protein transport protein SEC13 (protein) Protein transport protein SEC31 (protein)

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7UHY \| pdb_00007uhy	Download File View File

Human GATOR2 complex

Rogala, K.B., Valenstein, M.L., Lalgudi, P.V.

(2022) Nature 607: 610-616

Released	2022-07-20
Method	ELECTRON MICROSCOPY 3.66 Å
Organisms	Homo sapiens
Macromolecule	Unique protein chains: 7
Unique Ligands	ZN

1 to 17 of 17 Structures

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2PM6 | pdb_00002pm6

Crystal Structure of yeast Sec13/31 edge element of the COPII vesicular coat, native version

2PM7 | pdb_00002pm7

Crystal structure of yeast Sec13/31 edge element of the COPII vesicular coat, selenomethionine version

2PM9 | pdb_00002pm9

Crystal structure of yeast Sec13/31 vertex element of the COPII vesicular coat

3BG0 | pdb_00003bg0

Architecture of a Coat for the Nuclear Pore Membrane

3BG1 | pdb_00003bg1

Architecture of a Coat for the Nuclear Pore Membrane

3IKO | pdb_00003iko

Crystal structure of the heterotrimeric Sec13-Nup145C-Nup84 nucleoporin complex

3MZK | pdb_00003mzk

Sec13/Sec16 complex, S.cerevisiae

3MZL | pdb_00003mzl

Sec13/Sec31 edge element, loop deletion mutant

4BZJ | pdb_00004bzj

The structure of the COPII coat assembled on membranes

4BZK | pdb_00004bzk

The structure of the COPII coat assembled on membranes

4L9O | pdb_00004l9o

Crystal Structure of the Sec13-Sec16 blade-inserted complex from Pichia pastoris

4XMM | pdb_00004xmm

Structure of the yeast coat nucleoporin complex, space group C2

4XMN | pdb_00004xmn

Structure of the yeast coat nucleoporin complex, space group P212121

6ZG5 | pdb_00006zg5

COPII on membranes, outer coat right-handed rod, class1

6ZG6 | pdb_00006zg6

COPII on membranes, outer coat vertex

6ZL0 | pdb_00006zl0

COPII on membranes, outer coat left-handed rod

7UHY | pdb_00007uhy

Human GATOR2 complex

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

2PM6 | pdb_00002pm6

2PM7 | pdb_00002pm7

2PM9 | pdb_00002pm9

3BG0 | pdb_00003bg0

3BG1 | pdb_00003bg1

3IKO | pdb_00003iko

3MZK | pdb_00003mzk

3MZL | pdb_00003mzl

4BZJ | pdb_00004bzj

4BZK | pdb_00004bzk

4L9O | pdb_00004l9o

4XMM | pdb_00004xmm

4XMN | pdb_00004xmn

6ZG5 | pdb_00006zg5

6ZG6 | pdb_00006zg6

6ZL0 | pdb_00006zl0

7UHY | pdb_00007uhy