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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Gene Name = "UBA52"

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Search Summary

This query matches 64 Structures.

Refinements

Structure Determination Methodology

experimental (64)

Scientific Name of Source Organism

	Homo sapiens (64)
	Saccharomyces cerevisiae S288C (3)
	Human betacoronavirus 2c Jordan-N3/2012 (2)
	Mus musculus (2)
	synthetic construct (2)
	Bos taurus (1)
	Legionella pneumophila (1)
	Naumovozyma castellii (1)
	Saccharomyces cerevisiae (1)
	Severe acute respiratory syndrome coronavirus 2 (1)

More...

Taxonomy

	Eukaryota (64)
	Bacteria (3)
	Riboviria (3)
	other sequences (2)

Experimental Method

	X-RAY DIFFRACTION (41)
	SOLUTION NMR (17)
	ELECTRON MICROSCOPY (6)

Polymer Entity Type

	Protein (64)
	DNA (2)
	RNA (1)

Refinement Resolution (Å)

	1.0 - 1.5 (1)
	1.5 - 2.0 (9)
	2.0 - 2.5 (10)
	2.5 - 3.0 (15)
	3.0 - 3.5 (7)
	3.5 - 4.0 (4)
	4.0 - 4.5 (1)

Release Date

	2000 - 2004 (1)
	2005 - 2009 (18)
	2010 - 2014 (24)
	2015 - 2019 (6)
	2020 - 2024 (15)

Enzyme Classification Name

	Hydrolases (19)
	Transferases (14)
	Ligases (6)
	Lyases (1)

Symmetry Type

	Asymmetric (62)
	Cyclic (3)

SCOP Classification

	Alpha and beta proteins (a+b) (47)
	Artifacts (8)
	All beta proteins (4)
	All alpha proteins (1)

AllSelected

1 to 25 of 64 Structures

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1NBF \| pdb_00001nbf	Download File View File

Crystal structure of a UBP-family deubiquitinating enzyme in isolation and in complex with ubiquitin aldehyde

Hu, M., Li, P., Li, M., Li, W., Yao, T., Wu, J.-W., Gu, W., Cohen, R.E., Shi, Y.

(2002) Cell 111: 1041-1054

Released	2003-01-07
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens
Macromolecule	Ubiquitin aldehyde (protein) Ubiquitin carboxyl-terminal hydrolase 7 (protein)

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2HTH \| pdb_00002hth	Download File View File

Structural basis for ubiquitin recognition by the human EAP45/ESCRT-II GLUE domain

Alam, S.L., Whitby, F.G., Hill, C.P., Sundquist, W.I.

(2006) Nat Struct Mol Biol 13: 1029-1030

Released	2006-10-24
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Homo sapiens
Macromolecule	Ubiquitin (protein) Vacuolar protein sorting protein 36 (protein)

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2IBI \| pdb_00002ibi	Download File View File

Covalent Ubiquitin-USP2 Complex

Walker, J.R., Avvakumov, G.V., Bernstein, G., Xue, S., Finerty Jr., P.J., MacKenzie, F., Weigelt, J., Sundstrom, M., Arrowsmith, C.H., Edwards, A.M., Bochkarev, A., Dhe-Paganon, S., Structural Genomics Consortium (SGC)

To be published

Released	2006-10-24
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens
Macromolecule	Ubiquitin (protein) Ubiquitin carboxyl-terminal hydrolase 2 (protein)
Unique Ligands	NEH, ZN

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2K6D \| pdb_00002k6d	Download File View File

CIN85 Sh3-C domain in complex with ubiquitin

Forman-Kay, J., Bezsonova, I.

(2008) Biochemistry 47: 8937-8949

Released	2008-08-19
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	SH3 domain-containing kinase-binding protein 1 (protein) Ubiquitin (protein)

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2K8B \| pdb_00002k8b	Download File View File

Solution structure of PLAA family ubiquitin binding domain (PFUC) cis isomer in complex with ubiquitin

Fu, Q.S., Zhou, C.J., Gao, H.C., Lin, D.H., Hu, H.Y.

(2009) J Biological Chem 284: 19043-19052

Released	2009-05-05
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Phospholipase A-2-activating protein (protein) Ubiquitin (protein)

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2K8C \| pdb_00002k8c	Download File View File

Solution structure of PLAA family ubiquitin binding domain (PFUC) trans isomer in complex with ubiquitin

Fu, Q.S., Zhou, C.J., Gao, H.C., Lin, D.H., Hu, H.Y.

(2009) J Biological Chem 284: 19043-19052

Released	2009-05-05
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Phospholipase A-2-activating protein (protein) Ubiquitin (protein)

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2KDF \| pdb_00002kdf	Download File View File

NMR structure of minor S5a (196-306):K48 linked diubiquitin species

Zhang, N., Wang, Q., Ehlinger, A., Randles, L., Lary, J.W., Kang, Y., Haririnia, A., Cole, J.L., Fushman, D., Walters, K.J.

(2009) Mol Cell 35: 280-290

Released	2009-09-01
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	26S proteasome non-ATPase regulatory subunit 4 (protein) Ubiquitin (protein)

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2KHW \| pdb_00002khw	Download File View File

Solution Structure of the human Polymerase iota UBM2-Ubiquitin Complex

Bomar, M.G., D'Souza, S., Bienko, M., Dikic, I., Walker, G.

To be published

Released	2010-02-23
Method	SOLUTION NMR
Organisms	Homo sapiens Streptococcus sp. 'group G
Macromolecule	Immunoglobulin G-binding protein G, DNA polymerase iota (protein) Ubiquitin (protein)

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2KJH \| pdb_00002kjh	Download File View File

NMR based structural model of the UBCH8-UBIQUITIN complex

Serniwka, S.A., Shaw, G.S.

(2009) Biochemistry 48: 12169-12179

Released	2009-12-08
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Ubiquitin (protein) Ubiquitin/ISG15-conjugating enzyme E2 L6 (protein)

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2KN5 \| pdb_00002kn5	Download File View File

A Correspondence Between Solution-State Dynamics of an Individual Protein and the Sequence and Conformational Diversity of its Family

Friedland, G.D.

(2009) PLoS Comput Biol 5: e1000393-e1000393

Released	2009-11-17
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Ubiquitin (protein)

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2KTF \| pdb_00002ktf	Download File View File

Solution NMR structure of human polymerase iota UBM2 in complex with ubiquitin

Cui, G., Benirschke, R., Mer, G.

(2010) Biochemistry 49: 10198-10207

Released	2010-11-03
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	DNA polymerase iota (protein) Ubiquitin (protein)

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2KWU \| pdb_00002kwu	Download File View File

Solution Structure of UBM2 of murine Polymerase iota in Complex with Ubiquitin

Burschowsky, D., Rudolf, F., Rabut, G., Herrmann, T., Peter, M., Wider, G.

(2011) J Biological Chem 286: 1364-1373

Released	2010-10-06
Method	SOLUTION NMR
Organisms	Homo sapiens Mus musculus
Macromolecule	DNA polymerase iota (protein) Ubiquitin (protein)

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2KWV \| pdb_00002kwv	Download File View File

Solution Structure of UBM1 of murine Polymerase iota in Complex with Ubiquitin

Burschowsky, D., Rudolf, F., Rabut, G., Herrmann, T., Peter, M., Wider, G.

(2011) J Biological Chem 286: 1364-1373

Released	2010-10-06
Method	SOLUTION NMR
Organisms	Homo sapiens Mus musculus
Macromolecule	DNA polymerase iota (protein) Ubiquitin (protein)

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2L0F \| pdb_00002l0f	Download File View File

Solution NMR structure of human polymerase iota UBM2 (P692A mutant) in complex with ubiquitin

Cui, G., Benirschke, R., Mer, G.

(2010) Biochemistry 49: 10198-10207

Released	2010-11-03
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	DNA polymerase iota (protein) Ubiquitin (protein)

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2LJ5 \| pdb_00002lj5	Download File View File

Description of the Structural fluctuations of proteins from structure-based calculations of Residual dipolar couplings

De Simone, A., Montalvao, R., Vendruscolo, M.

(2012) J Biomol NMR 53: 281-292

Released	2012-07-18
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Ubiquitin (protein)

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2MJB \| pdb_00002mjb	Download File View File

Solution nmr structure of ubiquitin refined against dipolar couplings in 4 media

Maltsev, A., Grishaev, A., Roche, J., Zasloff, M., Bax, A.

(2014) J Am Chem Soc 136: 3752-3755

Released	2014-03-26
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Ubiquitin-60S ribosomal protein L40 (protein)

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2MUR \| pdb_00002mur	Download File View File

Solution Structure of the Human FAAP20 UBZ-Ubiquitin Complex

Wang, S., Wojtaszek, J.L., Zhou, P.

(2014) Nucleic Acids Res 42: 13997-14005

Released	2014-12-03
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Fanconi anemia-associated protein of 20 kDa (protein) Ubiquitin (protein)
Unique Ligands	ZN

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2N3U \| pdb_00002n3u	Download File View File

Solution structure of the Rpn1 T1 site engaging two monoubiquitin molecules

Chen, X., Walters, K.J.

(2016) Science 351:

Released	2016-02-24
Method	SOLUTION NMR
Organisms	Homo sapiens Saccharomyces cerevisiae S288C
Macromolecule	26S proteasome regulatory subunit RPN1 (protein) Ubiquitin-60S ribosomal protein L40 (protein)

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2N3V \| pdb_00002n3v	Download File View File

Solution structure of the Rpn1 T1 site with K48-linked diubiquitin in the extended binding mode

Chen, X., Walters, K.J.

(2016) Science 351:

Released	2016-02-24
Method	SOLUTION NMR
Organisms	Homo sapiens Saccharomyces cerevisiae S288C
Macromolecule	26S proteasome regulatory subunit RPN1 (protein) Ubiquitin-60S ribosomal protein L40 (protein)

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2N3W \| pdb_00002n3w	Download File View File

Solution structure of the Rpn1 T1 site with K48-linked diubiquitin in the contracted binding mode

Chen, X., Walters, K.J.

(2016) Science 351:

Released	2016-02-24
Method	SOLUTION NMR
Organisms	Homo sapiens Saccharomyces cerevisiae S288C
Macromolecule	26S proteasome regulatory subunit RPN1 (protein) Ubiquitin-60S ribosomal protein L40 (protein)

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3DVG \| pdb_00003dvg	Download File View File

Crystal structure of K63-specific fab Apu.3A8 bound to K63-linked di-ubiquitin

Hymowitz, S.G.

(2008) Cell 134: 668-678

Released	2008-09-30
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Homo sapiens
Macromolecule	Human IgG1 fab fragment heavy chain (protein) Human IgG1 fab fragment light chain (protein) Ubiquitin (protein) Ubiquitin D77 (protein)

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3DVN \| pdb_00003dvn	Download File View File

Crystal structure of K63-specific fab Apu2.16 bound to K63-linked di-ubiquitin

Hymowitz, S.G.

(2008) Cell 134: 668-678

Released	2008-09-30
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Homo sapiens
Macromolecule	Human IgG1 fab fragment heavy chain (protein) Human IgG1 fab fragment light chain (protein) Ubiquitin (protein) Ubiquitin D77 (protein)