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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Gene Name = "CPAMD1"

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Search Summary

This query matches 18 Structures.

Refinements

Structure Determination Methodology

experimental (18)

Scientific Name of Source Organism

	Homo sapiens (18)
	Mus musculus (2)
	Staphylococcus aureus subsp. aureus str. Newman (2)
	Borreliella burgdorferi (1)
	Bos taurus (1)
	Rattus norvegicus (1)
	Staphylococcus aureus subsp. aureus Mu50 (1)
	Trypanosoma brucei brucei TREU927 (1)

Taxonomy

	Eukaryota (18)
	Bacteria (4)

Experimental Method

	X-RAY DIFFRACTION (16)
	ELECTRON MICROSCOPY (2)

Polymer Entity Type

Protein (18)

Refinement Resolution (Å)

	1.5 - 2.0 (1)
	2.0 - 2.5 (10)
	2.5 - 3.0 (4)
	3.0 - 3.5 (3)

Release Date

	2005 - 2009 (2)
	2010 - 2014 (7)
	2015 - 2019 (3)
	2020 - 2024 (6)

Enzyme Classification Name

Hydrolases (2)

Membrane Protein Annotation

	MemProtMD (2)
	PDBTM (2)
	OPM (1)
	mpstruc (1)

Symmetry Type

	Asymmetric (16)
	Cyclic (3)

SCOP Classification

	All alpha proteins (11)
	Artifacts (7)
	Small proteins (1)
	Alpha and beta proteins (a/b) (1)

AllSelected

1 to 18 of 18 Structures

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3D5R \| pdb_00003d5r	Download File View File

Crystal Structure of Efb-C (N138A) / C3d Complex

Geisbrecht, B.V.

(2008) Protein Sci 17: 1894-1906

Released	2008-09-09
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens Staphylococcus aureus subsp. aureus str. Newman
Macromolecule	Complement C3 (protein) Fibrinogen-binding protein (protein)

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3D5S \| pdb_00003d5s	Download File View File

Crystal Structure of Efb-C (R131A) / C3d Complex

Geisbrecht, B.V.

(2008) Protein Sci 17: 1894-1906

Released	2008-09-16
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens Staphylococcus aureus subsp. aureus str. Newman
Macromolecule	Complement C3 (protein) Fibrinogen-binding protein (protein)

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3OED \| pdb_00003oed	Download File View File

The structure of the complex between complement receptor CR2 and its ligand complement fragment C3d

Isenman, D.E., van den Elsen, J.M.H.

(2011) Science 332: 608-611

Released	2011-05-11
Method	X-RAY DIFFRACTION 3.16 Å
Organisms	Homo sapiens
Macromolecule	Complement C3 (protein) Complement receptor type 2 (protein)

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3OXU \| pdb_00003oxu	Download File View File

Complement components factor H CCP19-20 and C3d in complex

Morgan, H.P., Schmidt, C.Q., Guariento, M., Gillespie, D., Herbert, A.P., Mertens, H., Blaum, B.S., Svergun, D., Johansson, C.M., Uhrin, D., Barlow, P.N., Hannan, J.P.

(2011) Nat Struct Mol Biol 18: 463-470

Released	2011-02-16
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	Complement C3 (protein) HF protein (protein)
Unique Ligands	GOL

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3RJ3 \| pdb_00003rj3	Download File View File

Complement components factor H CCP19-20 (S1191L mutant) and C3D in complex

Morgan, H.P., Hannan, J.P.

(2012) Biochemistry 51: 1874-1884

Released	2012-03-14
Method	X-RAY DIFFRACTION 2.35 Å
Organisms	Homo sapiens
Macromolecule	Complement C3d fragment (protein) Complement Factor H-related protein 1 (protein)
Unique Ligands	GOL

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4HW5 \| pdb_00004hw5	Download File View File

Crystal Structure of the Human C3a anaphylatoxin

Bajic, G., Yatime, L., Andersen, G.R.

(2013) Protein Sci 22: 204-212

Released	2012-12-12
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Homo sapiens
Macromolecule	Complement C3 (protein)
Unique Ligands	SO4

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4HWJ \| pdb_00004hwj	Download File View File

Crystal Structure of the Human C3a desArg anaphylatoxin

Bajic, G., Yatime, L., Andersen, G.R.

(2013) Protein Sci 22: 204-212

Released	2012-12-12
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Homo sapiens
Macromolecule	Complement C3 (protein)
Unique Ligands	SO4

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4M76 \| pdb_00004m76	Download File View File

Integrin I domain of complement receptor 3 in complex with C3d

Bajic, G., Yatime, L., Vorup-Jensen, T., Andersen, G.R.

(2013) Proc Natl Acad Sci U S A 110: 16426-16431

Released	2013-10-02
Method	X-RAY DIFFRACTION 2.804 Å
Organisms	Homo sapiens
Macromolecule	Complement C3 (protein) Integrin alpha-M (protein)
Unique Ligands	NI

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4ONT \| pdb_00004ont	Download File View File

Ternary host recognition complex of complement factor H, C3d, and sialic acid

Blaum, B.S., Stehle, T.S.

(2015) Nat Chem Biol 11: 77-82

Released	2014-11-26
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Homo sapiens
Macromolecule	Complement C3d fragment (protein) Complement factor H (protein)
Unique Ligands	GOL
Unique branched monosaccharides	BGC, GAL, SIA

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4ZH1 \| pdb_00004zh1	Download File View File

Complement factor H in complex with the GM1 glycan

Blaum, B.S., Stehle, T.

(2016) Glycobiology 26: 532-539

Released	2016-01-13
Method	X-RAY DIFFRACTION 2.24 Å
Organisms	Homo sapiens
Macromolecule	Complement C3 (protein) Complement factor H (protein)
Unique Ligands	GOL
Unique branched monosaccharides	BGC, GAL, NGA, SIA

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5NBQ \| pdb_00005nbq	Download File View File

The structure of the tripartite complex between OspE, the C-terminal domains of factor H and C3dg

Kolodziejczyk, R., Mikula, K.M., Kotila, T.M., Postis, V.L.G., Sakari, J.T., Meri, T.

(2017) PLoS One 12: e0188127-e0188127

Released	2017-12-06
Method	X-RAY DIFFRACTION 3.18 Å
Organisms	Borreliella burgdorferi Homo sapiens
Macromolecule	Complement C3 (protein) Complement factor H (protein) Outer surface protein E (protein) Outer surface protein E,Outer surface protein E (protein)

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6RMT \| pdb_00006rmt	Download File View File

Crystal structure of disulphide-linked human C3d dimer

Wahid, A.A., van den Elsen, J.M.H., Crennell, S.J.

(2021) Front Immunol 12: 714055-714055

Released	2020-11-18
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	Complement C3 (protein)
Unique Ligands	CL

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6RMU \| pdb_00006rmu	Download File View File

Crystal structure of disulphide-linked human C3d dimer in complex with Staphylococcus aureus complement subversion protein Sbi-IV

Wahid, A.A., van den Elsen, J.M.H., Crennell, S.J.

(2022) Front Immunol 13:

Released	2020-11-18
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens Staphylococcus aureus subsp. aureus Mu50
Macromolecule	Complement C3 (protein) Immunoglobulin-binding protein Sbi (protein)
Unique Ligands	EDO, PEG

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6S0B \| pdb_00006s0b	Download File View File

Crystal Structure of Properdin in complex with the CTC domain of C3/C3b

van den Bos, R.M., Pearce, N.M., Gros, P.

(2019) Front Immunol 10: 2097-2097

Released	2019-09-04
Method	X-RAY DIFFRACTION 2.312 Å
Organisms	Homo sapiens
Macromolecule	Complement C3 (protein) Properdin (protein)
Unique Ligands	MAN, NAG
Unique branched monosaccharides	BGC, FUC

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7PI6 \| pdb_00007pi6	Download File View File

Trypanosoma brucei ISG65 bound to human complement C3d

Cook, A.D., Higgins, M.K.

(2022) Nat Commun 13: 5085-5085

Released	2022-07-27
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Homo sapiens Trypanosoma brucei brucei TREU927
Macromolecule	65 kDa invariant surface glycoprotein (protein) Complement C3dg fragment (protein)
Unique Ligands	GOL, PG0

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7UE9 \| pdb_00007ue9	Download File View File

Structure of anti-C3d Fab(3d8b) in complex with C3d

Olland, A.M., White, A., Suto, R.K.

(2022) Front Immunol 13: 869725-869725

Released	2022-06-08
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	Complement C3dg fragment (protein) Fab heavy chain (protein) Fab light chain (protein)
Unique Ligands	GOL

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8HK2 \| pdb_00008hk2	Download File View File

C3aR-Gi-C3a protein complex

Wang, Y., Liu, W., Xu, Y., Zhuang, Y., Xu, H.E.

(2023) Nat Chem Biol 19: 1351-1360

Released	2023-05-10
Method	ELECTRON MICROSCOPY 2.9 Å
Organisms	Bos taurus Homo sapiens Rattus norvegicus
Macromolecule	Unique protein chains: 6
Unique Ligands	CLR, PLM

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8I9L \| pdb_00008i9l	Download File View File

Structure of C3a-C3aR-Go complex (Composite map)

Yadav, M.K., Yadav, R., Maharana, J., Sarma, P., Banerjee, R., Shukla, A.K., Gati, C.

(2023) Cell 186: 4956-4973.e21

Released	2023-10-18
Method	ELECTRON MICROSCOPY 3.18 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	Unique protein chains: 6

1 to 18 of 18 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

3D5R | pdb_00003d5r

Crystal Structure of Efb-C (N138A) / C3d Complex

3D5S | pdb_00003d5s

Crystal Structure of Efb-C (R131A) / C3d Complex

3OED | pdb_00003oed

The structure of the complex between complement receptor CR2 and its ligand complement fragment C3d

3OXU | pdb_00003oxu

Complement components factor H CCP19-20 and C3d in complex

3RJ3 | pdb_00003rj3

Complement components factor H CCP19-20 (S1191L mutant) and C3D in complex

4HW5 | pdb_00004hw5

Crystal Structure of the Human C3a anaphylatoxin

4HWJ | pdb_00004hwj

Crystal Structure of the Human C3a desArg anaphylatoxin

4M76 | pdb_00004m76

Integrin I domain of complement receptor 3 in complex with C3d

4ONT | pdb_00004ont

Ternary host recognition complex of complement factor H, C3d, and sialic acid

4ZH1 | pdb_00004zh1

Complement factor H in complex with the GM1 glycan

5NBQ | pdb_00005nbq

The structure of the tripartite complex between OspE, the C-terminal domains of factor H and C3dg

6RMT | pdb_00006rmt

Crystal structure of disulphide-linked human C3d dimer

6RMU | pdb_00006rmu

Crystal structure of disulphide-linked human C3d dimer in complex with Staphylococcus aureus complement subversion protein Sbi-IV

6S0B | pdb_00006s0b

Crystal Structure of Properdin in complex with the CTC domain of C3/C3b

7PI6 | pdb_00007pi6

Trypanosoma brucei ISG65 bound to human complement C3d

7UE9 | pdb_00007ue9

Structure of anti-C3d Fab(3d8b) in complex with C3d

8HK2 | pdb_00008hk2

C3aR-Gi-C3a protein complex

8I9L | pdb_00008i9l

Structure of C3a-C3aR-Go complex (Composite map)

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

3D5R | pdb_00003d5r

3D5S | pdb_00003d5s

3OED | pdb_00003oed

3OXU | pdb_00003oxu

3RJ3 | pdb_00003rj3

4HW5 | pdb_00004hw5

4HWJ | pdb_00004hwj

4M76 | pdb_00004m76

4ONT | pdb_00004ont

4ZH1 | pdb_00004zh1

5NBQ | pdb_00005nbq

6RMT | pdb_00006rmt

6RMU | pdb_00006rmu

6S0B | pdb_00006s0b

7PI6 | pdb_00007pi6

7UE9 | pdb_00007ue9

8HK2 | pdb_00008hk2

8I9L | pdb_00008i9l