RCSB PDB: Search

Warning You are using a web browser that we do not support. Our website will not work properly. Please update to a newer version or download a new web browser, such as Chrome or Firefox.

Help

Help

RCSB PDB

Deposit
- PDBx/mmCIF file
- pdb_extract
- SF-Tool
- Ligand Expo
- MAXIT
- Validation Server
- Validation API
- Information for Journals
- Validation Task Forces
- wwPDB OneDep System
- PDB-IHM
Search
Visualize
Analyze
Download
Learn
- Training Courses
- Guide to PDB Data
- Molecule of the Month
- Educational Resources
- Curricula
- Browse
- News
- SciArt Galleries
- Irving Geis
- David Goodsell
About
Careers
COVID-19

233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

	Include CSM
Advanced Search \| Browse Annotations		Help

Search
Query History
Browse Annotations
MyPDB

QUERY: Scientific Name of the Source Organism = "Mus musculus"

MyPDB Login

Search API

Advanced Search Query Builder

Help

Full Text

Structure Attributes

Help

NOT

Count

Add Subquery

Chemical Attributes

Sequence Similarity

Sequence Motif

Structure Similarity

Structure Motif

Chemical Similarity

Return

grouped by

Include Computed Structure Models (CSM)

Count

Clear

Search Summary

This query matches 17,075 Polymer Entities.

Refinements

Structure Determination Methodology

experimental (17,075)

Scientific Name of Source Organism

	Thermus thermophilus HB8 (17,075)
	Escherichia coli K-12 (7)
	Homo sapiens (4)
	Thermus thermophilus (2)

Taxonomy

	Bacteria (17,075)
	Eukaryota (4)

Experimental Method

	X-RAY DIFFRACTION (15,608)
	ELECTRON MICROSCOPY (1,443)
	SOLUTION NMR (24)
	NEUTRON DIFFRACTION (3)
	EPR (2)

Polymer Entity Type

	Protein (16,094)
	RNA (977)
	DNA (4)

Refinement Resolution (Å)

	0.5 - 1.0 (2)
	1.0 - 1.5 (58)
	1.5 - 2.0 (352)
	2.0 - 2.5 (1,029)
	2.5 - 3.0 (5,155)
	3.0 - 3.5 (6,348)
	3.5 - 4.0 (3,012)
	4.0 - 4.5 (295)
	> 4.5 (800)

Release Date

	1995 - 1999 (26)
	2000 - 2004 (75)
	2005 - 2009 (665)
	2010 - 2014 (5,425)
	2015 - 2019 (6,372)
	2020 - 2024 (4,509)
	2025 - 2029 (3)

Enzyme Classification Name

	Transferases (391)
	Oxidoreductases (362)
	Translocases (295)
	Hydrolases (149)
	Ligases (56)
	Lyases (47)
	Isomerases (26)

Membrane Protein Annotation

	PDBTM (270)
	MemProtMD (223)
	OPM (136)
	mpstruc (97)

Symmetry Type

	Asymmetric (16,439)
	Cyclic (550)
	Dihedral (145)
	Tetrahedral (9)
	Helical (5)

SCOP Classification

	Alpha and beta proteins (a/b) (343)
	Alpha and beta proteins (a+b) (244)
	All alpha proteins (121)
	All beta proteins (90)
	Multi-domain proteins (alpha and beta) (41)
	Artifacts (52)
	Membrane and cell surface proteins and peptides (80)
	Low resolution protein structures (20)
	Small proteins (11)
	Peptides (10)

More...

AllSelected

1 to 25 of 17,075 Polymer Entities

Page 1 of 683

Sort by

Explore in 3D

1A8H: Entity 1	Download File View File

METHIONYL-TRNA SYNTHETASE FROM THERMUS THERMOPHILUS

Sugiura, I., Nureki, O., Ugaji, Y., Kuwabara, S., Lober, B., Giege, R., Moras, D., Yokoyama, S., Konno, M., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2000) Structure 8: 197-208

Released	1999-05-04
Method	X-RAY DIFFRACTION 2 Å
Chain ID	A
Organism	Thermus thermophilus HB8
Macromolecule	METHIONYL-TRNA SYNTHETASE

Explore in 3D

1ATI: Entity 1	Download File View File

CRYSTAL STRUCTURE OF GLYCYL-TRNA SYNTHETASE FROM THERMUS THERMOPHILUS

Logan, D.T., Mazauric, M.-H., Kern, D., Moras, D.

(1995) EMBO J 14: 4156-4167

Released	1997-07-07
Method	X-RAY DIFFRACTION 2.75 Å
Chain IDs	A, B
Organism	Thermus thermophilus HB8
Macromolecule	GLYCYL-TRNA SYNTHETASE

Explore in 3D

1ATI: Entity 2	Download File View File

CRYSTAL STRUCTURE OF GLYCYL-TRNA SYNTHETASE FROM THERMUS THERMOPHILUS

Logan, D.T., Mazauric, M.-H., Kern, D., Moras, D.

(1995) EMBO J 14: 4156-4167

Released	1997-07-07
Method	X-RAY DIFFRACTION 2.75 Å
Chain ID	C
Organism	Thermus thermophilus HB8
Macromolecule	GLYCYL-tRNA SYNTHETASE

Explore in 3D

1ATI: Entity 3	Download File View File

CRYSTAL STRUCTURE OF GLYCYL-TRNA SYNTHETASE FROM THERMUS THERMOPHILUS

Logan, D.T., Mazauric, M.-H., Kern, D., Moras, D.

(1995) EMBO J 14: 4156-4167

Released	1997-07-07
Method	X-RAY DIFFRACTION 2.75 Å
Chain ID	D
Organism	Thermus thermophilus HB8
Macromolecule	GLYCYL-tRNA SYNTHETASE

Explore in 3D

1B5O: Entity 1	Download File View File

THERMUS THERMOPHILUS ASPARTATE AMINOTRANSFERASE SINGLE MUTANT 1

Ura, H., Nakai, T., Kawaguchi, S.I., Miyahara, I., Hirotsu, K., Kuramitsu, S.

(2001) J Biochem 130: 89-98

Released	2003-09-02
Method	X-RAY DIFFRACTION 2.2 Å
Chain IDs	A, B
Organism	Thermus thermophilus HB8
Macromolecule	PROTEIN (ASPARTATE AMINOTRANSFERASE)

Explore in 3D

1B5P: Entity 1	Download File View File

THERMUS THERMOPHILUS ASPARTATE AMINOTRANSFERASE DOUBLE MUTANT 1

Ura, H., Nakai, T., Kawaguchi, S.I., Miyahara, I., Hirotsu, K., Kuramitsu, S.

(2001) J Biochem 130: 89-98

Released	2003-09-02
Method	X-RAY DIFFRACTION 1.8 Å
Chain IDs	A, B
Organism	Thermus thermophilus HB8
Macromolecule	PROTEIN (ASPARTATE AMINOTRANSFERASE)

Explore in 3D

1B76: Entity 1	Download File View File

GLYCYL-TRNA SYNTHETASE FROM THERMUS THERMOPHILUS COMPLEXED WITH ATP

Arnez, J.G., Moras, D.

(1999) J Mol Biology 286: 1449-1459

Released	1999-01-28
Method	X-RAY DIFFRACTION 3.4 Å
Chain IDs	A, B
Organism	Thermus thermophilus HB8
Macromolecule	Glycine--tRNA ligase

Explore in 3D

1BJW: Entity 1	Download File View File

ASPARTATE AMINOTRANSFERASE FROM THERMUS THERMOPHILUS

Nakai, T., Okada, K., Kuramitsu, S., Hirotsu, K., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(1999) Biochemistry 38: 2413-2424

Released	1999-07-22
Method	X-RAY DIFFRACTION 1.8 Å
Chain IDs	A, B
Organism	Thermus thermophilus HB8
Macromolecule	ASPARTATE AMINOTRANSFERASE

Explore in 3D

1BKG: Entity 1	Download File View File

ASPARTATE AMINOTRANSFERASE FROM THERMUS THERMOPHILUS WITH MALEATE

Nakai, T., Okada, K., Kuramitsu, S., Hirotsu, K., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(1999) Biochemistry 38: 2413-2424

Released	1999-07-22
Method	X-RAY DIFFRACTION 2.6 Å
Chain IDs	A, B, C, D
Organism	Thermus thermophilus HB8
Macromolecule	ASPARTATE AMINOTRANSFERASE

Explore in 3D

1BXB: Entity 1	Download File View File

XYLOSE ISOMERASE FROM THERMUS THERMOPHILUS

Chang, C., Park, B.C., Lee, D.-S., Suh, S.W.

(1999) J Mol Biology 288: 623-634

Released	1999-02-16
Method	X-RAY DIFFRACTION 2.2 Å
Chain IDs	A, B, C, D
Organism	Thermus thermophilus HB8
Macromolecule	XYLOSE ISOMERASE

Explore in 3D

1C4O: Entity 1	Download File View File

CRYSTAL STRUCTURE OF THE DNA NUCLEOTIDE EXCISION REPAIR ENZYME UVRB FROM THERMUS THERMOPHILUS

Machius, M., Henry, L., Palnitkar, M., Deisenhofer, J.

(1999) Proc Natl Acad Sci U S A 96: 11717-11722

Released	2000-07-26
Method	X-RAY DIFFRACTION 1.5 Å
Chain ID	A
Organism	Thermus thermophilus HB8
Macromolecule	DNA NUCLEOTIDE EXCISION REPAIR ENZYME UVRB

Explore in 3D

1D2M: Entity 1	Download File View File

UVRB PROTEIN OF THERMUS THERMOPHILUS HB8; A NUCLEOTIDE EXCISION REPAIR ENZYME

Nakagawa, N., Sugahara, M., Masui, R., Kato, R., Fukuyama, K., Kuramitsu, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(1999) J Biochem 126: 986-990

Released	2000-03-22
Method	X-RAY DIFFRACTION 1.9 Å
Chain ID	A
Organism	Thermus thermophilus HB8
Macromolecule	EXCINUCLEASE ABC SUBUNIT B

Explore in 3D

1DAR: Entity 1	Download File View File

ELONGATION FACTOR G IN COMPLEX WITH GDP

Al-Karadaghi, S., Aevarsson, A., Garber, M., Zheltonosova, J., Liljas, A.

(1996) Structure 4: 555-565

Released	1996-07-11
Method	X-RAY DIFFRACTION 2.4 Å
Chain ID	A
Organism	Thermus thermophilus HB8
Macromolecule	ELONGATION FACTOR G

Explore in 3D

1DPZ: Entity 1	Download File View File

STRUCTURE OF MODIFIED 3-ISOPROPYLMALATE DEHYDROGENASE AT THE C-TERMINUS, HD711

Nurachman, Z., Akanuma, S., Sato, T., Oshima, T., Tanaka, N.

(2000) Protein Eng 13: 253-258

Released	2000-01-12
Method	X-RAY DIFFRACTION 2.8 Å
Chain IDs	A, B
Organism	Thermus thermophilus HB8
Macromolecule	3-ISOPROPYLMALATE DEHYDROGENASE

Explore in 3D

1DR0: Entity 1	Download File View File

STRUCTURE OF MODIFIED 3-ISOPROPYLMALATE DEHYDROGENASE AT THE C-TERMINUS, HD708

Nurachman, Z., Akanuma, S., Sato, T., Oshima, T., Tanaka, N.

(2000) Protein Eng 13: 253-258

Released	2000-01-19
Method	X-RAY DIFFRACTION 2.2 Å
Chain IDs	A, B
Organism	Thermus thermophilus HB8
Macromolecule	3-ISOPROPYLMALATE DEHYDROGENASE

Explore in 3D

1DR8: Entity 1	Download File View File

STRUCTURE OF MODIFIED 3-ISOPROPYLMALATE DEHYDROGENASE AT THE C-TERMINUS, HD177

Nurachman, Z., Akanuma, S., Sato, T., Oshima, T., Tanaka, N.

(2000) Protein Eng 13: 253-258

Released	2000-01-19
Method	X-RAY DIFFRACTION 2.7 Å
Chain IDs	A, B
Organism	Thermus thermophilus HB8
Macromolecule	3-ISOPROPYLMALATE DEHYDROGENASE

Explore in 3D

1DT1: Entity 1	Download File View File

THERMUS THERMOPHILUS CYTOCHROME C552 SYNTHESIZED BY ESCHERICHIA COLI

Fee, J.A., Chen, Y., Hill, M.J., Gomez-Moran, E., Loehr, T., Ai, J., Thony-Meyer, L., Williams, P.A., Stura, E., Sridhar, V., McRee, D.E.

(2000) Protein Sci 9: 2074-2084

Released	2000-02-18
Method	X-RAY DIFFRACTION 1.8 Å
Chain ID	A
Organism	Thermus thermophilus HB8
Macromolecule	CYTOCHROME C552

Explore in 3D

1EE8: Entity 1	Download File View File

CRYSTAL STRUCTURE OF MUTM (FPG) PROTEIN FROM THERMUS THERMOPHILUS HB8

Sugahara, M., Mikawa, T., Kumasaka, T., Yamamoto, M., Kato, R., Fukuyama, K., Inoue, Y., Kuramitsu, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2000) EMBO J 19: 3857-3869

Released	2001-01-31
Method	X-RAY DIFFRACTION 1.9 Å
Chain IDs	A, B
Organism	Thermus thermophilus HB8
Macromolecule	MUTM (FPG) PROTEIN

Explore in 3D

1EHK: Entity 1	Download File View File

CRYSTAL STRUCTURE OF THE ABERRANT BA3-CYTOCHROME-C OXIDASE FROM THERMUS THERMOPHILUS

Soulimane, T., Buse, G., Bourenkov, G.P., Bartunik, H.D., Huber, R., Than, M.E.

(2000) EMBO J 19: 1766-1776

Released	2001-02-22
Method	X-RAY DIFFRACTION 2.4 Å
Chain ID	A
Organism	Thermus thermophilus HB8
Macromolecule	BA3-TYPE CYTOCHROME-C OXIDASE

Explore in 3D

1EHK: Entity 2	Download File View File

CRYSTAL STRUCTURE OF THE ABERRANT BA3-CYTOCHROME-C OXIDASE FROM THERMUS THERMOPHILUS

Soulimane, T., Buse, G., Bourenkov, G.P., Bartunik, H.D., Huber, R., Than, M.E.

(2000) EMBO J 19: 1766-1776

Released	2001-02-22
Method	X-RAY DIFFRACTION 2.4 Å
Chain ID	B
Organism	Thermus thermophilus HB8
Macromolecule	BA3-TYPE CYTOCHROME-C OXIDASE

Explore in 3D

1EHK: Entity 3	Download File View File

CRYSTAL STRUCTURE OF THE ABERRANT BA3-CYTOCHROME-C OXIDASE FROM THERMUS THERMOPHILUS

Soulimane, T., Buse, G., Bourenkov, G.P., Bartunik, H.D., Huber, R., Than, M.E.

(2000) EMBO J 19: 1766-1776

Released	2001-02-22
Method	X-RAY DIFFRACTION 2.4 Å
Chain ID	C
Organism	Thermus thermophilus HB8
Macromolecule	BA3-TYPE CYTOCHROME-C OXIDASE

Explore in 3D

1EIY: Entity 1	Download File View File

THE CRYSTAL STRUCTURE OF PHENYLALANYL-TRNA SYNTHETASE FROM THERMUS THERMOPHILUS COMPLEXED WITH COGNATE TRNAPHE

Goldgur, Y., Mosyak, L., Reshetnikova, L., Ankilova, V., Safro, M.

(1997) Structure 5: 59-68

Released	2000-03-06
Method	X-RAY DIFFRACTION 3.3 Å
Chain ID	A [auth C]
Organism	Thermus thermophilus HB8
Macromolecule	TRNA(PHE)

Explore in 3D

1EIY: Entity 2	Download File View File

THE CRYSTAL STRUCTURE OF PHENYLALANYL-TRNA SYNTHETASE FROM THERMUS THERMOPHILUS COMPLEXED WITH COGNATE TRNAPHE

Goldgur, Y., Mosyak, L., Reshetnikova, L., Ankilova, V., Safro, M.

(1997) Structure 5: 59-68

Released	2000-03-06
Method	X-RAY DIFFRACTION 3.3 Å
Chain ID	B [auth A]
Organism	Thermus thermophilus HB8
Macromolecule	PHENYLALANYL-TRNA SYNTHETASE

Explore in 3D

1EIY: Entity 3	Download File View File

THE CRYSTAL STRUCTURE OF PHENYLALANYL-TRNA SYNTHETASE FROM THERMUS THERMOPHILUS COMPLEXED WITH COGNATE TRNAPHE

Goldgur, Y., Mosyak, L., Reshetnikova, L., Ankilova, V., Safro, M.

(1997) Structure 5: 59-68

Released	2000-03-06
Method	X-RAY DIFFRACTION 3.3 Å
Chain ID	C [auth B]
Organism	Thermus thermophilus HB8
Macromolecule	PHENYLALANYL-TRNA SYNTHETASE

Explore in 3D

1ELO: Entity 1	Download File View File

ELONGATION FACTOR G WITHOUT NUCLEOTIDE

Aevarsson, A., Brazhnikov, E., Garber, M., Zheltonosova, J., Chirgadze, Yu., Al-Karadaghi, S., Svensson, L.A., Liljas, A.

(1994) EMBO J 13: 3669-3677

Released	1996-08-01
Method	X-RAY DIFFRACTION 2.8 Å
Chain ID	A
Organism	Thermus thermophilus HB8
Macromolecule	ELONGATION FACTOR G

1 to 25 of 17,075 Polymer Entities

Page 1 of 683

Sort by

About
About Us
Citing Us
Publications
Team
Careers
Usage & Privacy

Support
Contact Us
Help
Website FAQ
Glossary
Service Status

RCSB PDB is hosted by

RCSB PDB is a member of the

RCSB Partners
Nucleic Acid Knowledgebase

wwPDB Partners
RCSB PDB
PDBe
PDBj
BMRB
EMDB

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

Prepare Data

Validate Data

Deposit Data

Help and Resources

Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification