RCSB PDB: Search

Warning You are using a web browser that we do not support. Our website will not work properly. Please update to a newer version or download a new web browser, such as Chrome or Firefox.

Help

Help

RCSB PDB

Deposit
- PDBx/mmCIF file
- pdb_extract
- SF-Tool
- Ligand Expo
- MAXIT
- Validation Server
- Validation API
- Information for Journals
- Validation Task Forces
- wwPDB OneDep System
- PDB-IHM
Search
Visualize
Analyze
Download
Learn
- Training Courses
- Guide to PDB Data
- Molecule of the Month
- Educational Resources
- Curricula
- Browse
- News
- SciArt Galleries
- Irving Geis
- David Goodsell
About
Careers
COVID-19

232,829 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

	Include CSM
Advanced Search \| Browse Annotations		Help

Search
Query History
Browse Annotations
MyPDB

QUERY: Expression Organism = "Paracoccus denitrificans"

MyPDB Login

Search API

Advanced Search Query Builder

Help

Full Text

Structure Attributes

Help

NOT

Count

Add Subquery

Chemical Attributes

Sequence Similarity

Sequence Motif

Structure Similarity

Structure Motif

Chemical Similarity

Return

grouped by

Include Computed Structure Models (CSM)

Count

Clear

Search Summary

This query matches 14 Structures.

Refinements

Structure Determination Methodology

experimental (14)

Scientific Name of Source Organism

	Paracoccus denitrificans PD1222 (12)
	Paracoccus denitrificans (8)
	Paracoccus versutus (1)

Taxonomy

Bacteria (14)

Experimental Method

X-RAY DIFFRACTION (14)

Polymer Entity Type

Protein (14)

Refinement Resolution (Å)

	1.5 - 2.0 (6)
	2.0 - 2.5 (7)
	2.5 - 3.0 (1)

Release Date

	2000 - 2004 (1)
	2005 - 2009 (1)
	2010 - 2014 (12)

Enzyme Classification Name

Oxidoreductases (13)

Symmetry Type

	Cyclic (12)
	Asymmetric (2)

SCOP Classification

	Small proteins (12)
	All beta proteins (5)
	Artifacts (7)
	All alpha proteins (2)

AllSelected

1 to 14 of 14 Structures

Page 1 of 1

Sort by

Explore in 3D

1PBY	Download File View File

Structure of the Phenylhydrazine Adduct of the Quinohemoprotein Amine Dehydrogenase from Paracoccus denitrificans at 1.7 A Resolution

Datta, S., Ikeda, T., Kano, K., Mathews, F.S.

(2003) Acta Crystallogr D Biol Crystallogr 59: 1551-1556

Released	2003-09-02
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Paracoccus denitrificans
Macromolecule	quinohemoprotein amine dehydrogenase 40 kDa subunit (protein) quinohemoprotein amine dehydrogenase 60 kDa subunit (protein) quinohemoprotein amine dehydrogenase 9 kDa subunit (protein)
Unique Ligands	HEC, TBU

Explore in 3D

2BGV	Download File View File

X-ray structure of ferric cytochrome c-550 from Paracoccus versutus

Worrall, J.A.R., Van Roon, A.-M.M., Ubbink, M., Canters, G.W.

(2005) FEBS J 272: 2441

Released	2005-05-11
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Paracoccus versutus
Macromolecule	CYTOCHROME C-550 (protein)
Unique Ligands	HEC

Explore in 3D

3RLM	Download File View File

Structure of the W199F MauG/pre-Methylamine Dehydrogenase complex after treatment with hydrogen peroxide

Yukl, E.T., Wilmot, C.M.

(2011) Proc Natl Acad Sci U S A 108: 16956-16961

Released	2011-10-05
Method	X-RAY DIFFRACTION 2.13 Å
Organisms	Paracoccus denitrificans PD1222
Macromolecule	Methylamine dehydrogenase heavy chain (protein) Methylamine dehydrogenase light chain (protein) Methylamine utilization protein MauG (protein)
Unique Ligands	ACT, CA, HEC, PGE

Explore in 3D

3RMZ	Download File View File

Crystal Structure of the W199F-MauG/pre-Methylamine Dehydrogenase Complex

Jensen, L.M.R., Wilmot, C.M.

(2011) Proc Natl Acad Sci U S A 108: 16956-16961

Released	2011-10-05
Method	X-RAY DIFFRACTION 1.72 Å
Organisms	Paracoccus denitrificans PD1222
Macromolecule	Methylamine dehydrogenase heavy chain (protein) Methylamine dehydrogenase light chain (protein) Methylamine utilization protein MauG (protein)
Unique Ligands	ACT, CA, EDO, HEC, MES, NA, P6G, PEG, PG4

Explore in 3D

3RN0	Download File View File

Crystal Structure of the W199K-MauG/pre-Methylamine Dehydrogenase Complex

Jensen, L.M.R., Wilmot, C.M.

(2011) Proc Natl Acad Sci U S A 108: 16956-16961

Released	2011-10-05
Method	X-RAY DIFFRACTION 1.91 Å
Organisms	Paracoccus denitrificans PD1222
Macromolecule	Methylamine dehydrogenase heavy chain (protein) Methylamine dehydrogenase light chain (protein) Methylamine utilization protein MauG (protein)
Unique Ligands	CA, HEC, MES, NA, P6G, PG4

Explore in 3D

3RN1	Download File View File

Crystal Structure of the W199E-MauG/pre-Methylamine Dehydrogenase Complex

Jensen, L.M.R., Wilmot, C.M.

To be published

Released	2012-04-25
Method	X-RAY DIFFRACTION 1.93 Å
Organisms	Paracoccus denitrificans PD1222
Macromolecule	Methylamine dehydrogenase heavy chain (protein) Methylamine dehydrogenase light chain (protein) Methylamine utilization protein MauG (protein)
Unique Ligands	1PE, ACT, CA, EDO, HEC, NA, PG4

Explore in 3D

4FA1	Download File View File

Crystal Structure of WT MauG in Complex with Pre-Methylamine Dehydrogenase Aged 130 Days.

Yukl, E.T., Wilmot, C.M.

(2013) Proc Natl Acad Sci U S A 110: 4569-4573

Released	2013-03-06
Method	X-RAY DIFFRACTION 2.18 Å
Organisms	Paracoccus denitrificans Paracoccus denitrificans PD1222
Macromolecule	Methylamine dehydrogenase heavy chain (protein) Methylamine dehydrogenase light chain (protein) Methylamine utilization protein MauG (protein)
Unique Ligands	ACT, CA, EDO, HEC, MES, NA

Explore in 3D

4FA4	Download File View File

Crystal Structure of WT MauG in Complex with Pre-Methylamine Dehydrogenase Aged 10 Days

Yukl, E.T., Wilmot, C.M.

(2013) Proc Natl Acad Sci U S A 110: 4569-4573

Released	2013-03-06
Method	X-RAY DIFFRACTION 2.14 Å
Organisms	Paracoccus denitrificans Paracoccus denitrificans PD1222
Macromolecule	Methylamine dehydrogenase heavy chain (protein) Methylamine dehydrogenase light chain (protein) Methylamine utilization protein MauG (protein)
Unique Ligands	ACT, CA, EDO, HEC, NA, PGE, PO4

Explore in 3D

4FA5	Download File View File

Crystal Structure of WT MauG in Complex with Pre-Methylamine Dehydrogenase Aged 20 Days

Yukl, E.T., Wilmot, C.M.

(2013) Proc Natl Acad Sci U S A 110: 4569-4573

Released	2013-03-06
Method	X-RAY DIFFRACTION 1.94 Å
Organisms	Paracoccus denitrificans Paracoccus denitrificans PD1222
Macromolecule	Methylamine dehydrogenase heavy chain (protein) Methylamine dehydrogenase light chain (protein) Methylamine utilization protein MauG (protein)
Unique Ligands	CA, EDO, HEC, MES, NA

Explore in 3D

4FA9	Download File View File

Crystal Structure of WT MauG in Complex with Pre-Methylamine Dehydrogenase Aged 30 Days

Yukl, E.T., Wilmot, C.M.

(2013) Proc Natl Acad Sci U S A 110: 4569-4573

Released	2013-03-06
Method	X-RAY DIFFRACTION 2.09 Å
Organisms	Paracoccus denitrificans Paracoccus denitrificans PD1222
Macromolecule	Methylamine dehydrogenase heavy chain (protein) Methylamine dehydrogenase light chain (protein) Methylamine utilization protein MauG (protein)
Unique Ligands	ACT, CA, EDO, HEC, NA, PGE

Explore in 3D

4FAN	Download File View File

Crystal Structure of WT MauG in Complex with Pre-Methylamine Dehydrogenase Aged 40 Days

Yukl, E.T., Wilmot, C.M.

(2013) Proc Natl Acad Sci U S A 110: 4569-4573

Released	2013-03-06
Method	X-RAY DIFFRACTION 2.08 Å
Organisms	Paracoccus denitrificans Paracoccus denitrificans PD1222
Macromolecule	Methylamine dehydrogenase heavy chain (protein) Methylamine dehydrogenase light chain (protein) Methylamine utilization protein MauG (protein)
Unique Ligands	ACT, CA, EDO, HEC, MES, NA, PGE

Explore in 3D

4FAV	Download File View File

Crystal Structure of WT MauG in Complex with Pre-Methylamine Dehydrogenase Aged 50 Days

Yukl, E.T., Wilmot, C.M.

(2013) Proc Natl Acad Sci U S A 110: 4569-4573

Released	2013-03-06
Method	X-RAY DIFFRACTION 2.08 Å
Organisms	Paracoccus denitrificans Paracoccus denitrificans PD1222
Macromolecule	Methylamine dehydrogenase heavy chain (protein) Methylamine dehydrogenase light chain (protein) Methylamine utilization protein MauG (protein)
Unique Ligands	CA, EDO, HEC, MES, NA, PGE

Explore in 3D

4FB1	Download File View File

Crystal Structure of WT MauG in Complex with Pre-Methylamine Dehydrogenase Aged 60 Days

Yukl, E.T., Wilmot, C.M.

(2013) Proc Natl Acad Sci U S A 110: 4569-4573

Released	2013-03-27
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Paracoccus denitrificans Paracoccus denitrificans PD1222
Macromolecule	Methylamine dehydrogenase heavy chain (protein) Methylamine dehydrogenase light chain (protein) Methylamine utilization protein MauG (protein)
Unique Ligands	CA, HEC, MES, NA

Explore in 3D

4O1Q	Download File View File

Crystal Structure of the Q103N-MauG/pre-Methylamine Dehydrogenase Complex

Yukl, E.T., Wilmot, C.W.

(2014) Biochemistry 53: 1342-1349

Released	2014-04-30
Method	X-RAY DIFFRACTION 2.59 Å
Organisms	Paracoccus denitrificans PD1222
Macromolecule	Methylamine dehydrogenase heavy chain (protein) Methylamine dehydrogenase light chain (protein) Methylamine utilization protein MauG (protein)
Unique Ligands	CA, EDO, HEC, MES, NA, PGE, PO4