RCSB PDB: Search

Warning You are using a web browser that we do not support. Our website will not work properly. Please update to a newer version or download a new web browser, such as Chrome or Firefox.

Help

Help

RCSB PDB

Deposit
- PDBx/mmCIF file
- pdb_extract
- SF-Tool
- Ligand Expo
- MAXIT
- Validation Server
- Validation API
- Information for Journals
- Validation Task Forces
- wwPDB OneDep System
- PDB-IHM
Search
Visualize
Analyze
Download
Learn
- Training Courses
- Guide to PDB Data
- Molecule of the Month
- Educational Resources
- Curricula
- Browse
- News
- SciArt Galleries
- Irving Geis
- David Goodsell
About
Careers
COVID-19

233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

	Include CSM
Advanced Search \| Browse Annotations		Help

Search
Query History
Browse Annotations
MyPDB

QUERY: Expression Organism = "Insect cell expression vector pTIE1"

MyPDB Login

Search API

Advanced Search Query Builder

Help

Full Text

Structure Attributes

Help

NOT

Count

Add Subquery

Chemical Attributes

Sequence Similarity

Sequence Motif

Structure Similarity

Structure Motif

Chemical Similarity

Return

grouped by

Include Computed Structure Models (CSM)

Count

Clear

Search Summary

This query matches 205 Structures.

Refinements

Structure Determination Methodology

experimental (205)

Scientific Name of Source Organism

	Homo sapiens (113)
	Arabidopsis thaliana (32)
	Mus musculus (29)
	synthetic construct (14)
	Arabidopsis (9)
	Severe acute respiratory syndrome coronavirus 2 (8)
	H6N1 subtype (6)
	Macaca mulatta (4)
	Oryza sativa Japonica Group (4)
	Rift Valley fever virus (4)

More...

Taxonomy

	Eukaryota (181)
	Riboviria (50)
	other sequences (19)
	Bacteria (5)
	unclassified sequences (2)
	Archaea (1)
	Duplodnaviria (1)
	Monodnaviria (1)
	unclassified viruses (1)

Experimental Method

	X-RAY DIFFRACTION (138)
	ELECTRON MICROSCOPY (67)

Polymer Entity Type

	Protein (205)
	DNA (26)
	RNA (4)

Refinement Resolution (Å)

	1.0 - 1.5 (1)
	1.5 - 2.0 (19)
	2.0 - 2.5 (27)
	2.5 - 3.0 (66)
	3.0 - 3.5 (50)
	3.5 - 4.0 (20)
	4.0 - 4.5 (8)
	> 4.5 (14)

Release Date

	2015 - 2019 (110)
	2020 - 2024 (92)
	2025 - 2029 (3)

Enzyme Classification Name

	Transferases (74)
	Hydrolases (50)
	Lyases (19)
	Ligases (5)
	Oxidoreductases (1)

Membrane Protein Annotation

	PDBTM (7)
	mpstruc (5)
	OPM (3)
	MemProtMD (1)

Symmetry Type

	Asymmetric (160)
	Cyclic (43)
	Icosahedral (3)
	Dihedral (1)

SCOP Classification

	All beta proteins (20)
	Alpha and beta proteins (a+b) (13)
	Coiled coil proteins (6)
	Artifacts (5)
	Alpha and beta proteins (a/b) (2)
	All alpha proteins (2)
	Multi-domain proteins (alpha and beta) (1)

AllSelected

1 to 25 of 205 Structures

Page 1 of 9

Sort by

Explore in 3D

4XII \| pdb_00004xii	Download File View File

X-ray structure of human butyrylcholinesterase in complex with N-((1-(2,3-dihydro-1H-inden-2-yl)piperidin-3-yl)methyl)-8-hydroxy-N-(2-methoxyethyl)-5-nitroquinoline-7-carboxamide

Knez, D., Boris, B., Coquelle, N., Sosic, I., Sink, R., Brazzolotto, X., Mravljak, J., Colletier, J.P., Gobec, S.

(2015) Bioorg Med Chem 23: 4442-4452

Released	2015-07-08
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Homo sapiens
Macromolecule	Cholinesterase (protein)
Unique Ligands	40V, CL, EDO, FUC, FUL, NAG
Unique branched monosaccharides	FUL, NAG

Explore in 3D

4YVD \| pdb_00004yvd	Download File View File

Crytsal structure of human Pleiotropic Regulator 1 (PRL1)

Dong, A., Zeng, H., Xu, C., Tempel, W., Li, Y., He, H., Bountra, C., Arrowsmith, C.H., Edwards, A.M., Brown, P.J., Min, J., Wu, H., Structural Genomics Consortium (SGC)

To be published

Released	2015-04-15
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Homo sapiens
Macromolecule	Pleiotropic regulator 1 (protein)
Unique Ligands	CL, NA, UNX

Explore in 3D

4YY0 \| pdb_00004yy0	Download File View File

The structure of hemagglutinin from a H6N1 influenza virus (A/chicken/Taiwan/A2837/2013)

Wang, F., Qi, J., Bi, Y., Zhang, W., Wang, M., Wang, M., Liu, J., Yan, J., Shi, Y., Gao, G.F.

To be published

Released	2016-03-23
Method	X-RAY DIFFRACTION 2.59 Å
Organisms	H6N1 subtype
Macromolecule	HA1 (protein) HA2 (protein)
Unique Ligands	NAG

Explore in 3D

4YY1 \| pdb_00004yy1	Download File View File

The structure of hemagglutinin from a H6N1 influenza virus (A/chicken/Taiwan/A2837/2013) in complex with human receptor analog 6'SLNLN

Wang, F., Qi, J., Bi, Y., Zhang, W., Wang, M., Wang, M., Liu, J., Yan, J., Shi, Y., Gao, G.F.

To be published

Released	2016-03-23
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	H6N1 subtype
Macromolecule	HA1 (protein) HA2 (protein)
Unique Ligands	NAG
Unique branched monosaccharides	GAL, NAG, SIA

Explore in 3D

4YY7 \| pdb_00004yy7	Download File View File

The structure of hemagglutinin from a H6N1 influenza virus (A/chicken/Taiwan/A2837/2013) in complex with avian receptor analog 3'SLNLN

Wang, F., Qi, J., Bi, Y., Zhang, W., Wang, M., Wang, M., Liu, J., Yan, J., Shi, Y., Gao, G.F.

To be published

Released	2016-03-23
Method	X-RAY DIFFRACTION 2.99 Å
Organisms	H6N1 subtype
Macromolecule	HA1 (protein) HA2 (protein)
Unique Ligands	NAG
Unique branched monosaccharides	GAL, NAG, SIA

Explore in 3D

4YY9 \| pdb_00004yy9	Download File View File

The structure of hemagglutinin from a H6N1 influenza virus (A/Taiwan/2/2013)

Wang, F., Qi, J., Bi, Y., Zhang, W., Wang, M., Wang, M., Liu, J., Yan, J., Shi, Y., Gao, G.F.

To be published

Released	2016-04-13
Method	X-RAY DIFFRACTION 2.601 Å
Organisms	H6N1 subtype
Macromolecule	HA1 (protein) HA2 (protein)
Unique Ligands	NAG
Unique branched monosaccharides	BMA, NAG

Explore in 3D

4YYA \| pdb_00004yya	Download File View File

The structure of hemagglutinin from a H6N1 influenza virus (A/Taiwan/2/2013) in complex with avian receptor analog 3'SLNLN

Wang, F., Qi, J., Bi, Y., Zhang, W., Wang, M., Wang, M., Liu, J., Yan, J., Shi, Y., Gao, G.F.

To be published

Released	2016-04-13
Method	X-RAY DIFFRACTION 2.595 Å
Organisms	H6N1 subtype
Macromolecule	HA1 (protein) HA2 (protein)
Unique Ligands	NAG
Unique branched monosaccharides	BMA, GAL, NAG, SIA

Explore in 3D

4YYB \| pdb_00004yyb	Download File View File

The structure of hemagglutinin from a H6N1 influenza virus (A/Taiwan/2/2013) in complex with human receptor analog 6'SLNLN

Wang, F., Qi, J., Bi, Y., Zhang, W., Wang, M., Wang, M., Liu, J., Yan, J., Shi, Y., Gao, G.F.

To be published

Released	2016-04-13
Method	X-RAY DIFFRACTION 2.609 Å
Organisms	H6N1 subtype
Macromolecule	HA1 (protein) HA2 (protein)
Unique Ligands	NAG
Unique branched monosaccharides	BMA, GAL, NAG, SIA

Explore in 3D

4Z0C \| pdb_00004z0c	Download File View File

Crystal structure of TLR13-ssRNA13 complex

Song, W., Han, Z., Chai, J.

(2015) Nat Struct Mol Biol 22: 782-787

Released	2015-10-07
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Mus musculus synthetic construct
Macromolecule	Toll-like receptor 13 (protein) DNA (5'-R(PAPCPGPGPAPAPAPGPAPCPCPCP*C)-3') (nucleic acid)
Unique Ligands	NAG
Unique branched monosaccharides	NAG

Explore in 3D

4Z5W \| pdb_00004z5w	Download File View File

The plant peptide hormone receptor

Chai, J., Wang, J., Han, Z.

(2015) Nature 525: 265-268

Released	2016-03-02
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Arabidopsis Daucus carota
Macromolecule	Phytosulfokine (protein) Phytosulfokine receptor 1 (protein)
Unique Ligands	NAG
Unique branched monosaccharides	NAG

Explore in 3D

4Z61 \| pdb_00004z61	Download File View File

The plant peptide hormone receptor complex

Chai, J., Wang, J.

(2015) Nature 525: 265-268

Released	2016-03-02
Method	X-RAY DIFFRACTION 2.75 Å
Organisms	Arabidopsis Arabidopsis thaliana Daucus carota
Macromolecule	PTR-ILE-PTR-THR-GLN (protein) Phytosulfokine receptor 1 (protein) Somatic embryogenesis receptor kinase 2 (protein)
Unique Ligands	NAG

Explore in 3D

4Z62 \| pdb_00004z62	Download File View File

The plant peptide hormone free receptor

Chai, J., Wang, J., Han, Z.

(2015) Nature 525: 265-268

Released	2016-03-02
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Daucus carota
Macromolecule	Phytosulfokine receptor 1 (protein)
Unique Ligands	NAG

Explore in 3D

4Z63 \| pdb_00004z63	Download File View File

The plant peptide hormone receptor in arabidopsis

Chai, J., Wang, J., Han, Z.

(2015) Nature 525: 265-268

Released	2016-03-02
Method	X-RAY DIFFRACTION 2.514 Å
Organisms	Arabidopsis Arabidopsis thaliana
Macromolecule	Phytosulfokine (protein) Phytosulfokine receptor 1 (protein)
Unique Ligands	NAG

Explore in 3D

4Z64 \| pdb_00004z64	Download File View File

the plant peptide hormone receptor complex in arabidopsis

Chai, J., Wang, J., Han, Z.

(2015) Nature 525: 265-268

Released	2016-03-02
Method	X-RAY DIFFRACTION 2.659 Å
Organisms	Arabidopsis Arabidopsis thaliana
Macromolecule	Phytosulfokine (protein) Phytosulfokine receptor 1 (protein) Somatic embryogenesis receptor kinase 1 (protein)
Unique Ligands	NAG, SO4
Unique branched monosaccharides	NAG

Explore in 3D

4ZPY \| pdb_00004zpy	Download File View File

Structure of N170A MVM mutant empty capsid

Guerra, P., Querol-Audi, J., Silva, C., Mateu, M.G., Verdaguer, N.

(2017) Sci Rep 7: 4101-4101

Released	2017-05-24
Method	X-RAY DIFFRACTION 3.8 Å
Organisms	Murine minute virus strain MVM prototype
Macromolecule	VP1 protein (protein)

Explore in 3D

4ZTU \| pdb_00004ztu	Download File View File

Structural basis for processivity and antiviral drug toxicity in human mitochondrial DNA replicase

Szymanski, M.R., Kuznestov, V.B., Shumate, C.K., Meng, Q., Lee, Y.-S., Patel, G., Patel, S.S., Yin, Y.W.

(2015) EMBO J 34: 1959

Released	2015-09-23
Method	X-RAY DIFFRACTION 3.299 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	DNA polymerase subunit gamma-1 (protein) DNA polymerase subunit gamma-2, mitochondrial (protein) DNA (25-MER) (nucleic acid) DNA (5'-D(PAPAPGPAPCPGPAPGPGPGPCPCPAPGPTPGPCPCPGPTPAPC)-3') (nucleic acid)
Unique Ligands	DCT, MG

Explore in 3D

4ZTZ \| pdb_00004ztz	Download File View File

Structural basis for processivity and antiviral drug toxicity in human mitochondrial DNA replicase

Szymanski, M.R., Yin, Y.W.

(2015) EMBO J 34: 1959

Released	2015-09-23
Method	X-RAY DIFFRACTION 3.442 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	DNA polymerase subunit gamma-1 (protein) DNA polymerase subunit gamma-2, mitochondrial (protein) DNA (25-MER) (nucleic acid) DNA (5'-D(PAPAPGPAPCPGPAPGPGPGPCPCPAPGPTPGPCPCPGPTPAPC)-3') (nucleic acid)
Unique Ligands	DCP, MG

Explore in 3D

5C51 \| pdb_00005c51	Download File View File

Probing the Structural and Molecular Basis of Nucleotide Selectivity by Human Mitochondrial DNA Polymerase gamma

Sohl, C.D., Szymanski, M.R., Mislak, A.C., Shumate, C.K., Amiralaei, S., Schinazi, R.F., Anderson, K.S., Whitney, Y.Y.

(2015) Proc Natl Acad Sci U S A 112: 8596-8601

Released	2016-05-11
Method	X-RAY DIFFRACTION 3.426 Å
Organisms	DNA launch vector pDE-GFP2 Homo sapiens Virus Chimp162
Macromolecule	DNA polymerase subunit gamma-1 (protein) DNA polymerase subunit gamma-2, mitochondrial (protein) DNA (nucleic acid) DNA (5'-D((AD)PAPAPAPCPGPAPGPGPGPCPCPAPGPTPGPCPCPGPTPAPC)-3') (nucleic acid)
Unique Ligands	1RY, MG

Explore in 3D

5C52 \| pdb_00005c52	Download File View File

Probing the Structural and Molecular Basis of Nucleotide Selectivity by Human Mitochondrial DNA Polymerase gamma

Sohl, C.D., Szymanski, M.R., Mislak, A.C., Shumate, C.K., Amiralaei, S., Schinazi, R.F., Anderson, K.S., Yin, Y.W.

(2015) Proc Natl Acad Sci U S A 112: 8596-8601

Released	2016-05-11
Method	X-RAY DIFFRACTION 3.637 Å
Organisms	DNA launch vector pDE-GFP2 Homo sapiens
Macromolecule	DNA polymerase subunit gamma-1 (protein) DNA polymerase subunit gamma-2, mitochondrial (protein) DNA (26-MER) (nucleic acid) DNA (5'-D(APAPAPAPCPGPAPGPGPGPCPCPAPGPTPGPCPCPGPTPAPC)-3') (nucleic acid)
Unique Ligands	1RY, MG

Explore in 3D

5C53 \| pdb_00005c53	Download File View File

Probing the Structural and Molecular Basis of Nucleotide Selectivity by Human Mitochondrial DNA Polymerase gamma

Sohl, C.D., Szymanski, M.R., Mislak, A.C., Shumate, C.K., Amiralaei, S., Schinazi, R.F., Anderson, K.S., Yin, Y.W.

(2015) Proc Natl Acad Sci U S A 112: 8596-8601

Released	2016-01-27
Method	X-RAY DIFFRACTION 3.567 Å
Organisms	DNA launch vector pDE-GFP2 Homo sapiens
Macromolecule	DNA polymerase subunit gamma-1 (protein) Pol gamma B (protein) DNA (26-MER) (nucleic acid) DNA (5'-D(APAPAPAPCPGPAPGPGPGPCPCPAPGPTPGPCPCPGPTPAPC)-3') (nucleic acid)
Unique Ligands	4Y3, DOC, MG

Explore in 3D

5CO5 \| pdb_00005co5	Download File View File

Crystal structure of Ac-AChBP in complex with conotoxin GIC

Wang, X.Q., Xu, M.Y., Luo, S.L., Lin, B.

To be published

Released	2016-07-20
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Aplysia californica Conus geographus
Macromolecule	Alpha-conotoxin GIC (protein) Soluble acetylcholine receptor (protein)

Explore in 3D

5DI1 \| pdb_00005di1	Download File View File

MAP4K4 in complex with an inhibitor

Liu, S.

(2015) ACS Med Chem Lett 6: 1128-1133

Released	2016-01-13
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Homo sapiens
Macromolecule	Mitogen-activated protein kinase kinase kinase kinase 4 (protein)
Unique Ligands	5DF

Explore in 3D

5GMQ \| pdb_00005gmq	Download File View File

Structure of MERS-CoV RBD in complex with a fully human antibody MCA1

Chen, C., Wang, J.M., Zou, T.T., Gao, X.P., Cui, S., Jin, Q.

(2017) J Infect Dis 215: 1807-1815

Released	2017-05-31
Method	X-RAY DIFFRACTION 2.703 Å
Organisms	Homo sapiens Middle East respiratory syndrome-related coronavirus
Macromolecule	MCA1 heavy chain (protein) MCA1 light chain (protein) S protein (protein)
Unique Ligands	EDO
Unique branched monosaccharides	MAN, NAG

Explore in 3D

5HYW \| pdb_00005hyw	Download File View File

The crystal structure of the D3-ASK1 complex

Yao, R.F., Ming, Z.H., Yan, L.M., Rao, Z.H., Lou, Z.Y., Xie, D.X.

(2016) Nature 536: 469-473

Released	2016-08-03
Method	X-RAY DIFFRACTION 3.01 Å
Organisms	Arabidopsis thaliana Oryza sativa Japonica Group
Macromolecule	F-box/LRR-repeat MAX2 homolog (protein) SKP1-like protein 1A (protein)

Explore in 3D

5HYX \| pdb_00005hyx	Download File View File

Plant peptide hormone receptor RGFR1 in complex with RGF1

Song, W., Han, Z., Chai, J.

(2016) Cell Res 26: 674-685

Released	2017-01-11
Method	X-RAY DIFFRACTION 2.596 Å
Organisms	Arabidopsis Arabidopsis thaliana
Macromolecule	PTR-SER-ASN-PRO-GLY-HIS-HIS-PRO-HYP-ARG-HIS-ASN (protein) Probable LRR receptor-like serine/threonine-protein kinase At4g26540 (protein)
Unique Ligands	NAG
Unique branched monosaccharides	NAG

1 to 25 of 205 Structures

Page 1 of 9

Sort by

About
About Us
Citing Us
Publications
Team
Careers
Usage & Privacy

Support
Contact Us
Help
Website FAQ
Glossary
Service Status

RCSB PDB is hosted by

RCSB PDB is a member of the

RCSB Partners
Nucleic Acid Knowledgebase

wwPDB Partners
RCSB PDB
PDBe
PDBj
BMRB
EMDB

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

Prepare Data

Validate Data

Deposit Data

Help and Resources

Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

4XII | pdb_00004xii

4YVD | pdb_00004yvd

4YY0 | pdb_00004yy0

4YY1 | pdb_00004yy1

4YY7 | pdb_00004yy7

4YY9 | pdb_00004yy9

4YYA | pdb_00004yya

4YYB | pdb_00004yyb

4Z0C | pdb_00004z0c

4Z5W | pdb_00004z5w

4Z61 | pdb_00004z61

4Z62 | pdb_00004z62

4Z63 | pdb_00004z63

4Z64 | pdb_00004z64

4ZPY | pdb_00004zpy

4ZTU | pdb_00004ztu

4ZTZ | pdb_00004ztz

5C51 | pdb_00005c51

5C52 | pdb_00005c52

5C53 | pdb_00005c53

5CO5 | pdb_00005co5

5DI1 | pdb_00005di1

5GMQ | pdb_00005gmq

5HYW | pdb_00005hyw

5HYX | pdb_00005hyx