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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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Search Summary

This query matches 549 Structures.

Refinements

Structure Determination Methodology

experimental (549)

Scientific Name of Source Organism

	Homo sapiens (72)
	Thermostichus vulcanus (42)
	Gallus gallus (22)
	Thermosynechococcus vestitus BP-1 (17)
	Thermotoga maritima (14)
	Sulfolobus acidocaldarius DSM 639 (11)
	Bacteroides thetaiotaomicron VPI-5482 (10)
	Mycolicibacterium smegmatis MC2 155 (10)
	Thermotoga maritima MSB8 (10)
	Actinidia deliciosa (7)

More...

Taxonomy

	Bacteria (374)
	Eukaryota (145)
	Archaea (26)
	Riboviria (4)
	other sequences (3)
	Duplodnaviria (2)
	unclassified sequences (1)

Experimental Method

	X-RAY DIFFRACTION (488)
	ELECTRON MICROSCOPY (60)
	SOLUTION NMR (1)

Polymer Entity Type

	Protein (549)
	RNA (11)
	DNA (2)

Refinement Resolution (Å)

	1.0 - 1.5 (54)
	1.5 - 2.0 (184)
	2.0 - 2.5 (180)
	2.5 - 3.0 (80)
	3.0 - 3.5 (28)
	3.5 - 4.0 (11)
	4.0 - 4.5 (4)
	> 4.5 (7)

Release Date

	1990 - 1994 (2)
	1995 - 1999 (1)
	2000 - 2004 (25)
	2005 - 2009 (147)
	2010 - 2014 (148)
	2015 - 2019 (108)
	2020 - 2024 (116)
	2025 - 2029 (2)

Enzyme Classification Name

	Oxidoreductases (114)
	Transferases (54)
	Hydrolases (45)
	Translocases (19)
	Lyases (24)
	Isomerases (10)
	Ligases (7)

Membrane Protein Annotation

	PDBTM (131)
	mpstruc (63)
	MemProtMD (81)
	OPM (45)

Symmetry Type

	Asymmetric (268)
	Cyclic (236)
	Dihedral (66)
	Octahedral (2)

SCOP Classification

	Membrane and cell surface proteins and peptides (58)
	Alpha and beta proteins (a/b) (69)
	Alpha and beta proteins (a+b) (82)
	All alpha proteins (72)
	Artifacts (60)
	All beta proteins (37)
	Small proteins (7)
	Multi-domain proteins (alpha and beta) (6)
	Coiled coil proteins (1)

AllSelected

1 to 25 of 549 Structures

Page 1 of 22

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1FSC \| pdb_00001fsc	Download File View File

Crystal Structure of Fasciculin 2 from Green Mamba Snake Venom: Evidence for Unusual Loop Flexibility

Housset, D., Le Du, M.H., Fontecilla-Camps, J.C.

(1996) Acta Crystallogr D Biol Crystallogr 52: 87-92

Released	1995-07-10
Method	X-RAY DIFFRACTION 2 Å
Organisms	Dendroaspis angusticeps
Macromolecule	FASCICULIN 2 (protein)
Unique Ligands	UNL

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1ML9 \| pdb_00001ml9	Download File View File

Structure of the Neurospora SET domain protein DIM-5, a histone lysine methyltransferase

Zhang, X., Tamaru, H., Khan, S.I., Horton, J.R., Keefe, L.J., Selker, E.U., Cheng, X.

(2002) Cell 111: 117-127

Released	2002-10-23
Method	X-RAY DIFFRACTION 1.98 Å
Organisms	Neurospora crassa
Macromolecule	Histone H3 methyltransferase DIM-5 (protein)
Unique Ligands	UNL, ZN

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1NF7 \| pdb_00001nf7	Download File View File

Ternary complex of the human type II Inosine Monophosphate Dedhydrogenase with Ribavirin Monophosphate and C2-Mycophenolic Adenine Dinucleotide

Risal, D., Strickler, M.D., Goldstein, B.M.

To be published

Released	2004-01-27
Method	X-RAY DIFFRACTION 2.65 Å
Organisms	Homo sapiens
Macromolecule	Inosine-5'-monophosphate dehydrogenase 2 (protein)
Unique Ligands	K, MYD, RVP, UNL

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1O5U \| pdb_00001o5u	Download File View File

Crystal structure of a duf861 family protein (tm1112) from thermotoga maritima at 1.83 A resolution

Joint Center for Structural Genomics (JCSG)

(2004) Proteins 56: 615-618

Released	2003-11-11
Method	X-RAY DIFFRACTION 1.83 Å
Organisms	Thermotoga maritima
Macromolecule	novel Thermotoga maritima enzyme TM1112 (protein)
Unique Ligands	UNL

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1O5Z \| pdb_00001o5z	Download File View File

Crystal structure of Folylpolyglutamate synthase (TM0166) from Thermotoga maritima at 2.10 A resolution

Joint Center for Structural Genomics (JCSG)

To be published

Released	2003-11-11
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Thermotoga maritima
Macromolecule	folylpolyglutamate synthase/dihydrofolate synthase (protein)
Unique Ligands	CL, SO4, UNL

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1OR8 \| pdb_00001or8	Download File View File

Structure of the Predominant protein arginine methyltransferase PRMT1

Zhang, X., Cheng, X.

(2003) Structure 11: 509-520

Released	2003-08-26
Method	X-RAY DIFFRACTION 2.35 Å
Organisms	Rattus norvegicus
Macromolecule	Protein arginine N-methyltransferase 1 (protein) Substrate peptide (protein)
Unique Ligands	GOL, SAH, UNL

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1ORI \| pdb_00001ori	Download File View File

Structure of the predominant protein arginine methyltransferase PRMT1

Zhang, X., Cheng, X.

(2003) Structure 11: 509-520

Released	2003-05-27
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Rattus norvegicus
Macromolecule	Protein arginine N-methyltransferase 1 (protein)
Unique Ligands	SAH, UNL

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1PPN \| pdb_00001ppn	Download File View File

STRUCTURE OF MONOCLINIC PAPAIN AT 1.60 ANGSTROMS RESOLUTION

Pickersgill, R.W., Harris, G.W., Garman, E.

(1992) Acta Crystallogr B 48: 59-67

Released	1994-01-31
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Carica papaya
Macromolecule	PAPAIN (protein)
Unique Ligands	MOH, UNL

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1RQF \| pdb_00001rqf	Download File View File

Structure of CK2 beta subunit crystallized in the presence of a p21WAF1 peptide

Bertrand, L., Sayed, M.F., Pei, X.-Y., Parisini, E., Dhanaraj, V., Bolanos-Garcia, V.M., Allende, J.E., Blundell, T.L.

(2004) Acta Crystallogr D Biol Crystallogr 60: 1698-1704

Released	2004-10-05
Method	X-RAY DIFFRACTION 2.89 Å
Organisms	Xenopus laevis
Macromolecule	Casein kinase II beta chain (protein) Disordered segment of Cyclin-dependent kinase inhibitor 1 (protein)
Unique Ligands	UNL, ZN

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1SVV \| pdb_00001svv	Download File View File

Initial Stuctural Analysis of Leishmania major Threonine Aldolase

Hol, W.G.J., Robien, M.A., Structural Genomics of Pathogenic Protozoa Consortium (SGPP)

To be published

Released	2004-08-17
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Leishmania major
Macromolecule	THREONINE ALDOLASE (protein)
Unique Ligands	UNL

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1TVF \| pdb_00001tvf	Download File View File

Crystal Structure of penicillin-binding protein 4 (PBP4) from Staphylococcus aureus

Rajashankar, K.R., Ray, S.S., Bonanno, J.B., Pinho, M., Tomasz, A., Burley, S.K., New York SGX Research Center for Structural Genomics (NYSGXRC)

To be published

Released	2004-07-06
Method	X-RAY DIFFRACTION 2 Å
Organisms	Staphylococcus aureus
Macromolecule	penicillin binding protein 4 (protein)
Unique Ligands	SO4, UNL

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1UEH \| pdb_00001ueh	Download File View File

E. coli undecaprenyl pyrophosphate synthase in complex with Triton X-100, magnesium and sulfate

Chang, S.-Y., Ko, T.-P., Liang, P.-H., Wang, A.H.-J.

(2003) J Biological Chem 278: 29298-29307

Released	2003-08-12
Method	X-RAY DIFFRACTION 1.73 Å
Organisms	Escherichia coli
Macromolecule	undecaprenyl pyrophosphate synthase (protein)
Unique Ligands	MG, OXN, SO4, UNL

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1VJ0 \| pdb_00001vj0	Download File View File

Crystal structure of Alcohol dehydrogenase (TM0436) from Thermotoga maritima at 2.00 A resolution

Joint Center for Structural Genomics (JCSG)

To be published

Released	2004-03-02
Method	X-RAY DIFFRACTION 2 Å
Organisms	Thermotoga maritima
Macromolecule	alcohol dehydrogenase, zinc-containing (protein)
Unique Ligands	UNL, ZN

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1VJ2 \| pdb_00001vj2	Download File View File

Crystal structure of a novel family of manganese-containing cupin (tm1459) from thermotoga maritima at 1.65 A resolution

Joint Center for Structural Genomics (JCSG)

(2004) Proteins 56: 611-614

Released	2003-12-09
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Thermotoga maritima
Macromolecule	novel manganese-containing cupin TM1459 (protein)
Unique Ligands	MN, UNL

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1VJL \| pdb_00001vjl	Download File View File

Crystal structure of a duf151 family protein (tm0160) from thermotoga maritima at 1.90 A resolution

Joint Center for Structural Genomics, Joint Center for Structural Genomics (JCSG)

(2004) Protein Sci 13: 3187-3199

Released	2004-03-16
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Thermotoga maritima
Macromolecule	hypothetical protein TM0160 (protein)
Unique Ligands	CL, UNL

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1VK2 \| pdb_00001vk2	Download File View File

Crystal structure of Uracil-DNA glycosylase (TM0511) from Thermotoga maritima at 1.90 A resolution

Joint Center for Structural Genomics (JCSG)

To be published

Released	2004-05-04
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Thermotoga maritima
Macromolecule	Uracil-DNA glycosylase TM0511 (protein)
Unique Ligands	SF4, UNL

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1VK8 \| pdb_00001vk8	Download File View File

CRYSTAL STRUCTURE OF A PUTATIVE THIAMINE BIOSYNTHESIS/SALVAGE PROTEIN (TM0486) FROM THERMOTOGA MARITIMA AT 1.80 A RESOLUTION

Joint Center for Structural Genomics (JCSG)

(2010) J Mol Biology 400: 463-476

Released	2004-05-18
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Thermotoga maritima
Macromolecule	hypothetical protein TM0486 (protein)
Unique Ligands	UNL

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1VK9 \| pdb_00001vk9	Download File View File

CRYSTAL STRUCTURE OF A DUF1893 family protein (TM1506) FROM THERMOTOGA MARITIMA AT 2.70 A RESOLUTION

Joint Center for Structural Genomics (JCSG)

(2008) Proteins 71: 1546-1552

Released	2004-05-18
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Thermotoga maritima
Macromolecule	conserved hypothetical protein TM1506 (protein)
Unique Ligands	UNL, ZN

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1VKE \| pdb_00001vke	Download File View File

Crystal structure of carboxymuconolactone decarboxylase family protein possibly involved in antioxidative response (TM1620) from Thermotoga maritima at 1.56 A resolution

Joint Center for Structural Genomics (JCSG)

To be published

Released	2004-06-08
Method	X-RAY DIFFRACTION 1.56 Å
Organisms	Thermotoga maritima MSB8
Macromolecule	carboxymuconolactone decarboxylase family protein (protein)
Unique Ligands	MPD, UNL

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1VKM \| pdb_00001vkm	Download File View File

Crystal structure of an indigoidine synthase a (idga)-like protein (tm1464) from thermotoga maritima msb8 at 1.90 A resolution

Joint Center for Structural Genomics (JCSG)

(2005) Proteins 59: 864-868

Released	2004-06-29
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Thermotoga maritima MSB8
Macromolecule	conserved hypothetical protein TM1464 (protein)
Unique Ligands	EDO, MN, UNL

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1VKY \| pdb_00001vky	Download File View File

Crystal structure of S-adenosylmethionine tRNA ribosyltransferase (TM0574) from Thermotoga maritima at 2.00 A resolution

Joint Center for Structural Genomics (JCSG)

(2005) Proteins 59: 869-874

Released	2004-08-17
Method	X-RAY DIFFRACTION 2 Å
Organisms	Thermotoga maritima
Macromolecule	S-adenosylmethionine:tRNA ribosyltransferase-isomerase (protein)
Unique Ligands	UNL

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1VL0 \| pdb_00001vl0	Download File View File

CRYSTAL STRUCTURE OF A DTDP-4-DEHYDRORHAMNOSE REDUCTASE, RFBD ORTHOLOG (CA_C2315) FROM CLOSTRIDIUM ACETOBUTYLICUM ATCC 824 AT 2.05 A RESOLUTION

Joint Center for Structural Genomics (JCSG)

To be published

Released	2004-08-17
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Clostridium acetobutylicum ATCC 824
Macromolecule	DTDP-4-dehydrorhamnose reductase, rfbD ortholog (protein)
Unique Ligands	NAI, UNL

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1VMG \| pdb_00001vmg	Download File View File

Crystal structure of MazG nucleotide pyrophosphohydrolase (13816655) from Sulfolobus solfataricus at 1.46 A resolution

Joint Center for Structural Genomics (JCSG)

To be published

Released	2004-10-05
Method	X-RAY DIFFRACTION 1.46 Å
Organisms	Saccharolobus solfataricus P2
Macromolecule	Hypothetical protein SSO3215 (protein)
Unique Ligands	LI, UNL

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1VP4 \| pdb_00001vp4	Download File View File

Crystal structure of a putative aminotransferase (tm1131) from thermotoga maritima msb8 at 1.82 A resolution

Joint Center for Structural Genomics (JCSG)

To be published

Released	2004-10-26
Method	X-RAY DIFFRACTION 1.82 Å
Organisms	Thermotoga maritima MSB8
Macromolecule	aminotransferase, putative (protein)
Unique Ligands	EDO, FMT, PLP, UNL

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1VP8 \| pdb_00001vp8	Download File View File

CRYSTAL STRUCTURE OF an alpha/beta domain of a putative pyruvate kinase (AF0103) FROM ARCHAEOGLOBUS FULGIDUS DSM 4304 AT 1.30 A RESOLUTION

Joint Center for Structural Genomics (JCSG)

To be published

Released	2004-10-26
Method	X-RAY DIFFRACTION 1.3 Å
Organisms	Archaeoglobus fulgidus DSM 4304
Macromolecule	hypothetical protein AF0103 (protein)
Unique Ligands	FMN, UNL

1 to 25 of 549 Structures

Page 1 of 22

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1FSC | pdb_00001fsc

1ML9 | pdb_00001ml9

1NF7 | pdb_00001nf7

1O5U | pdb_00001o5u

1O5Z | pdb_00001o5z

1OR8 | pdb_00001or8

1ORI | pdb_00001ori

1PPN | pdb_00001ppn

1RQF | pdb_00001rqf

1SVV | pdb_00001svv

1TVF | pdb_00001tvf

1UEH | pdb_00001ueh

1VJ0 | pdb_00001vj0

1VJ2 | pdb_00001vj2

1VJL | pdb_00001vjl

1VK2 | pdb_00001vk2

1VK8 | pdb_00001vk8

1VK9 | pdb_00001vk9

1VKE | pdb_00001vke

1VKM | pdb_00001vkm

1VKY | pdb_00001vky

1VL0 | pdb_00001vl0

1VMG | pdb_00001vmg

1VP4 | pdb_00001vp4

1VP8 | pdb_00001vp8