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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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Search Summary

This query matches 38 Structures.

Refinements

Structure Determination Methodology

experimental (38)

Scientific Name of Source Organism

	Pedobacter heparinus (12)
	Opitutus terrae PB90-1 (4)
	Paenibacillus barcinonensis (2)
	Amycolatopsis orientalis (1)
	Anaerococcus prevotii DSM 20548 (1)
	Apis mellifera (1)
	Aspergillus oryzae (1)
	Bacillus subtilis subsp. subtilis str. 168 (1)
	Bacteroides uniformis (1)
	Cellvibrio japonicus (1)

More...

Taxonomy

	Bacteria (28)
	Eukaryota (3)
	Duplodnaviria (1)

Experimental Method

	X-RAY DIFFRACTION (33)
	FIBER DIFFRACTION (5)

Polymer Entity Type

Protein (32)

Refinement Resolution (Å)

	1.0 - 1.5 (5)
	1.5 - 2.0 (16)
	2.0 - 2.5 (9)
	2.5 - 3.0 (2)
	3.0 - 3.5 (6)

Release Date

	1975 - 1979 (1)
	1980 - 1984 (5)
	1995 - 1999 (1)
	2000 - 2004 (11)
	2005 - 2009 (5)
	2010 - 2014 (5)
	2015 - 2019 (6)
	2020 - 2024 (4)

Enzyme Classification Name

	Lyases (13)
	Hydrolases (10)
	Transferases (1)

Symmetry Type

	Asymmetric (24)
	Cyclic (8)
	Dihedral (2)

SCOP Classification

	All beta proteins (10)
	Alpha and beta proteins (a/b) (4)
	All alpha proteins (6)
	Alpha and beta proteins (a+b) (1)

AllSelected

1 to 25 of 38 Structures

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1C4S \| pdb_00001c4s	Download File View File

CHONDROITIN-4-SULFATE. THE STRUCTURE OF A SULFATED GLYCOSAMINOGLYCAN

Arnott, S.

(1978) J Mol Biology 125: 1-19

Released	1980-03-28
Method	FIBER DIFFRACTION 3 Å
Unique Ligands	NA
Unique branched monosaccharides	ASG, GC4, GCU

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1CB8 \| pdb_00001cb8	Download File View File

CHONDROITINASE AC LYASE FROM FLAVOBACTERIUM HEPARINUM

Fethiere, J., Eggimann, B., Cygler, M.

(1999) J Mol Biology 288: 635-647

Released	1999-05-14
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Pedobacter heparinus
Macromolecule	PROTEIN (CHONDROITINASE AC) (protein)
Unique Ligands	CA, GOL
Unique branched monosaccharides	GCU, MAN, MFU, RAM, XYP

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1DBG \| pdb_00001dbg	Download File View File

CRYSTAL STRUCTURE OF CHONDROITINASE B

Huang, W., Matte, A., Li, Y., Kim, Y.S., Linhardt, R.J., Su, H., Cygler, M.

(1999) J Mol Biology 294: 1257-1269

Released	2000-01-12
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Pedobacter heparinus
Macromolecule	CHONDROITINASE B (protein)
Unique branched monosaccharides	BGC, G4D, GCU, MAN, MXY, RAM, XYP

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1DBO \| pdb_00001dbo	Download File View File

CRYSTAL STRUCTURE OF CHONDROITINASE B

Huang, W., Matte, A., Li, Y., Kim, Y.S., Linhardt, R.J., Su, H., Cygler, M.

(1999) J Mol Biology 294: 1257-1269

Released	2000-01-12
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Pedobacter heparinus
Macromolecule	CHONDROITINASE B (protein)
Unique branched monosaccharides	ASG, BGC, G4D, GC4, GCU, MAN, MXY, RAM, XYP

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1FCV \| pdb_00001fcv	Download File View File

CRYSTAL STRUCTURE OF BEE VENOM HYALURONIDASE IN COMPLEX WITH HYALURONIC ACID TETRAMER

Markovic-Housley, Z., Miglierini, G., Soldatova, L., Rizkallah, P.J., Mueller, U., Schirmer, T.

(2000) Structure 8: 1025-1035

Released	2001-10-01
Method	X-RAY DIFFRACTION 2.65 Å
Organisms	Apis mellifera
Macromolecule	HYALURONOGLUCOSAMINIDASE (protein)
Unique branched monosaccharides	GCU, NAG

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1HM2 \| pdb_00001hm2	Download File View File

ACTIVE SITE OF CHONDROITINASE AC LYASE REVEALED BY THE STRUCTURE OF ENZYME-OLIGOSACCHARIDE COMPLEXES AND MUTAGENESIS

Huang, W., Boju, L., Tkalec, L., Su, H., Yang, H.O., Gunay, N.S., Linhardt, R.J., Kim, Y.S., Matte, A., Cygler, M.

(2001) Biochemistry 40: 2359-2372

Released	2001-05-02
Method	X-RAY DIFFRACTION 2 Å
Organisms	Pedobacter heparinus
Macromolecule	CHONDROITINASE AC (protein)
Unique Ligands	CA
Unique branched monosaccharides	ASG, GCU, IDR, MAN, MXY, RAM, XYP

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1HM3 \| pdb_00001hm3	Download File View File

ACTIVE SITE OF CHONDROITINASE AC LYASE REVEALED BY THE STRUCTURE OF ENZYME-OLIGOSACCHARIDE COMPLEXES AND MUTAGENESIS

Huang, W., Boju, L., Tkalec, L., Su, H., Yang, H.O., Gunay, N.S., Linhardt, R.J., Kim, Y.S., Matte, A., Cygler, M.

(2001) Biochemistry 40: 2359-2372

Released	2001-05-02
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Pedobacter heparinus
Macromolecule	CHONDROITINASE AC (protein)
Unique Ligands	CA
Unique branched monosaccharides	BDP, GCU, MAN, MXY, NAG, RAM, XYP

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1HMU \| pdb_00001hmu	Download File View File

ACTIVE SITE OF CHONDROITINASE AC LYASE REVEALED BY THE STRUCTURE OF ENZYME-OLIGOSACCHARIDE COMPLEXES AND MUTAGENESIS

Huang, W., Boju, L., Tkalec, L., Su, H., Yang, H.O., Gunay, N.S., Linhardt, R.J., Kim, Y.S., Matte, A., Cygler, M.

(2001) Biochemistry 40: 2359-2372

Released	2001-05-02
Method	X-RAY DIFFRACTION 2 Å
Organisms	Pedobacter heparinus
Macromolecule	CHONDROITINASE AC (protein)
Unique Ligands	CA
Unique branched monosaccharides	ASG, GCD, GCU, MAN, MXY, RAM, XYP

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1HMW \| pdb_00001hmw	Download File View File

ACTIVE SITE OF CHONDROITINASE AC LYASE REVEALED BY THE STRUCTURE OF ENZYME-OLIGOSACCHARIDE COMPLEXES AND MUTAGENESIS

Huang, W., Boju, L., Tkalec, L., Su, H., Yang, H.O., Gunay, N.S., Linhardt, R.J., Kim, Y.S., Matte, A., Cygler, M.

(2001) Biochemistry 40: 2359-2372

Released	2001-05-02
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Pedobacter heparinus
Macromolecule	CHONDROITINASE AC (protein)
Unique Ligands	CA
Unique branched monosaccharides	ASG, BDP, GCD, GCU, MAN, MXY, NG6, RAM, XYP

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1HV6 \| pdb_00001hv6	Download File View File

CRYSTAL STRUCTURE OF ALGINATE LYASE A1-III COMPLEXED WITH TRISACCHARIDE PRODUCT.

Yoon, H.-J., Hashimoto, W., Miyake, O., Murata, K., Mikami, B.

(2001) J Mol Biology 307: 9-16

Released	2001-05-02
Method	X-RAY DIFFRACTION 2 Å
Organisms	Sphingomonas sp.
Macromolecule	ALGINATE LYASE (protein)
Unique Ligands	SO4
Unique branched monosaccharides	GCU, MAV, MAW

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1HYA \| pdb_00001hya	Download File View File

HYALURONIC ACID, STRUCTURE OF A FULLY EXTENDED 3-FOLD HELICAL SODIUM SALT AND COMPARISON WITH THE LESS EXTENDED 4-FOLD HELICAL FORMS

Arnott, S.

(1975) J Mol Biology 99: 219-235

Released	1978-05-17
Method	X-RAY DIFFRACTION 3 Å
Unique Ligands	NA
Unique branched monosaccharides	GCU, NAG

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1MQQ \| pdb_00001mqq	Download File View File

THE CRYSTAL STRUCTURE OF ALPHA-D-GLUCURONIDASE FROM BACILLUS STEAROTHERMOPHILUS T-1 COMPLEXED WITH GLUCURONIC ACID

Golan, G., Shallom, D., Teplitsky, A., Zaide, G., Shulami, S., Baasov, T., Stojanoff, V., Thompson, A., Shoham, Y., Shoham, G.

(2004) J Biological Chem 279: 3014-3024

Released	2003-09-17
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Geobacillus stearothermophilus
Macromolecule	ALPHA-D-GLUCURONIDASE (protein)
Unique Ligands	GCU, GOL

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1OFL \| pdb_00001ofl	Download File View File

CRYSTAL STRUCTURE OF CHONDROITINASE B COMPLEXED TO DERMATAN SULFATE HEXASACCHARIDE

Michel, G., Cygler, M.

(2004) J Biological Chem 279: 32882

Released	2004-06-10
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Pedobacter heparinus
Macromolecule	CHONDROITINASE B (protein)
Unique Ligands	CA
Unique branched monosaccharides	ASG, BGC, GCD, GCU, GLA, MAN, MXZ, NGK, RAM, XYP

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1OFM \| pdb_00001ofm	Download File View File

CRYSTAL STRUCTURE OF CHONDROITINASE B COMPLEXED TO CHONDROITIN 4-SULFATE TETRASACCHARIDE

Michel, G., Cygler, M.

(2004) J Biological Chem 279: 32882

Released	2004-04-19
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Pedobacter heparinus
Macromolecule	CHONDROITINASE B (protein)
Unique branched monosaccharides	ASG, BDP, BGC, GCD, GCU, GLA, MAN, MXZ, RAM, XYP

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2C4S \| pdb_00002c4s	Download File View File

CALCIUM CHONDROITIN 4-SULFATE. MOLECULAR CONFORMATION AND ORGANIZATION OF POLYSACCHARIDE CHAINS IN A PROTEOGLYCAN

Arnott, S.

(1978) J Mol Biology 125: 21-42

Released	1980-03-28
Method	FIBER DIFFRACTION 3 Å
Unique Ligands	CA
Unique branched monosaccharides	ASG, GCU

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2FUQ \| pdb_00002fuq	Download File View File

Crystal Structure of Heparinase II

Shaya, D., Cygler, M.

(2006) J Biological Chem 281: 15525-15535

Released	2006-04-18
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Pedobacter heparinus
Macromolecule	heparinase II protein (protein)
Unique Ligands	FMT, PO4, ZN
Unique branched monosaccharides	GCU, MAN, RAM, XYS

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2HYA \| pdb_00002hya	Download File View File

HYALURONIC ACID, MOLECULAR CONFORMATIONS AND INTERACTIONS IN TWO SODIUM SALTS

Arnott, S.

(1975) J Mol Biology 95: 359-384

Released	1980-03-28
Method	FIBER DIFFRACTION 3 Å
Unique Ligands	NA
Unique branched monosaccharides	GCU, NAG

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2VZR \| pdb_00002vzr	Download File View File

C-terminal CBM35 from Amycolatopsis orientalis exo-chitosanase CsxA in complex with glucuronic acid

Lammerts van Bueren, A., Boraston, A.B.

(2009) Proc Natl Acad Sci U S A 106: 3065

Released	2009-01-13
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Amycolatopsis orientalis
Macromolecule	EXO-BETA-D-GLUCOSAMINIDASE (protein)
Unique Ligands	CA, EDO, GCU

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2W87 \| pdb_00002w87	Download File View File

Xyl-CBM35 in complex with glucuronic acid containing disaccharide.

Montainer, C., Bueren, A.L.v., Dumon, C., Flint, J.E., Correia, M.A., Prates, J.A., Firbank, S.J., Lewis, R.J., Grondin, G.G., Ghinet, M.G., Gloster, T.M., Herve, C., Knox, J.P., Talbot, B.G., Turkenburg, J.P., Kerovuo, J., Brzezinski, R., Fontes, C.M.G.A., Davies, G.J., Boraston, A.B., Gilbert, H.J.

(2009) Proc Natl Acad Sci U S A 106: 3065

Released	2009-01-27
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Cellvibrio japonicus
Macromolecule	ESTERASE D (protein)
Unique Ligands	CA, GCU, UNL

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3E7J \| pdb_00003e7j	Download File View File

HeparinaseII H202A/Y257A double mutant complexed with a heparan sulfate tetrasaccharide substrate

Shaya, D., Cygler, M.

(2010) J Biological Chem 285: 20051-20061

Released	2008-12-30
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Pedobacter heparinus
Macromolecule	Heparinase II protein (protein)
Unique Ligands	ACT, ZN
Unique branched monosaccharides	GCD, GCU, NAG

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3E80 \| pdb_00003e80	Download File View File

Structure of Heparinase II complexed with heparan sulfate degradation disaccharide product

Shaya, D., Cygler, M.

(2010) J Biological Chem 285: 20051-20061

Released	2008-12-30
Method	X-RAY DIFFRACTION 2.35 Å
Organisms	Pedobacter heparinus
Macromolecule	Heparinase II protein (protein)
Unique Ligands	PO4, ZN
Unique branched monosaccharides	GCD, GCU, MAN, NDG, RAM, XYS

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3HYA \| pdb_00003hya	Download File View File

HYALURONIC ACID, MOLECULAR CONFORMATIONS AND INTERACTIONS IN TWO SODIUM SALTS

Arnott, S.

(1975) J Mol Biology 95: 359-384

Released	1980-03-28
Method	FIBER DIFFRACTION 3 Å
Unique Ligands	NA
Unique branched monosaccharides	BDP, GCU, NAG

Explore in 3D

3KL3 \| pdb_00003kl3	Download File View File

Crystal structure of Ligand bound XynC

St John, F.J., Hurlbert, J.C., Pozharski, E.

(2011) J Mol Biology 407: 92-109

Released	2010-12-08
Method	X-RAY DIFFRACTION 2.33 Å
Organisms	Bacillus subtilis subsp. subtilis str. 168
Macromolecule	Glucuronoxylanase xynC (protein)
Unique Ligands	BDP, DHI, GCU, PG4

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4HYA \| pdb_00004hya	Download File View File

HYALURONIC ACID, THE ROLE OF DIVALENT CATIONS IN CONFORMATION AND PACKING

Arnott, S.

(1977) J Mol Biology 117: 761-784

Released	1980-03-28
Method	FIBER DIFFRACTION 3 Å
Unique Ligands	CA
Unique branched monosaccharides	GCU, NAG

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4MHF \| pdb_00004mhf	Download File View File

Crystal structure of a TRAP periplasmic solute binding protein from Polaromonas sp. JS666 (Bpro_3107), target EFI-510173, with bound alpha/beta D-Glucuronate, space group P21

Vetting, M.W., Toro, R., Bhosle, R., Al Obaidi, N.F., Morisco, L.L., Wasserman, S.R., Sojitra, S., Zhao, S., Stead, M., Washington, E., Scott Glenn, A., Chowdhury, S., Evans, B., Hammonds, J., Hillerich, B., Love, J., Seidel, R.D., Imker, H.J., Jacobson, M.P., Gerlt, J.A., Almo, S.C., Enzyme Function Initiative (EFI)

(2015) Biochemistry 54: 909-931

Released	2013-09-18
Method	X-RAY DIFFRACTION 1.46 Å
Organisms	Polaromonas sp. JS666
Macromolecule	TRAP dicarboxylate transporter, DctP subunit (protein)
Unique Ligands	BDP, GCU

1 to 25 of 38 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1C4S | pdb_00001c4s

1CB8 | pdb_00001cb8

1DBG | pdb_00001dbg

1DBO | pdb_00001dbo

1FCV | pdb_00001fcv

1HM2 | pdb_00001hm2

1HM3 | pdb_00001hm3

1HMU | pdb_00001hmu

1HMW | pdb_00001hmw

1HV6 | pdb_00001hv6

1HYA | pdb_00001hya

1MQQ | pdb_00001mqq

1OFL | pdb_00001ofl

1OFM | pdb_00001ofm

2C4S | pdb_00002c4s

2FUQ | pdb_00002fuq

2HYA | pdb_00002hya

2VZR | pdb_00002vzr

2W87 | pdb_00002w87

3E7J | pdb_00003e7j

3E80 | pdb_00003e80

3HYA | pdb_00003hya

3KL3 | pdb_00003kl3

4HYA | pdb_00004hya

4MHF | pdb_00004mhf