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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Chemical ID(s) = P4G

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Search Summary

This query matches 54 Structures.

Refinements

Structure Determination Methodology

experimental (54)

Scientific Name of Source Organism

	Homo sapiens (12)
	Mus musculus (11)
	Drosophila melanogaster (8)
	Influenza A virus (2)
	Acinetobacter baylyi ADP1 (1)
	Agrobacterium tumefaciens (1)
	Agrobacterium tumefaciens LBA4213 (Ach5) (1)
	Aquifex aeolicus VF5 (1)
	Bacillus cereus (1)
	Bacillus subtilis (1)

More...

Taxonomy

	Eukaryota (30)
	Bacteria (21)
	Riboviria (5)
	Archaea (1)
	Varidnaviria (1)
	other sequences (1)

Experimental Method

X-RAY DIFFRACTION (54)

Polymer Entity Type

Protein (54)

Refinement Resolution (Å)

	1.0 - 1.5 (4)
	1.5 - 2.0 (18)
	2.0 - 2.5 (19)
	2.5 - 3.0 (9)
	3.0 - 3.5 (4)

Release Date

	2005 - 2009 (5)
	2010 - 2014 (8)
	2015 - 2019 (19)
	2020 - 2024 (21)
	2025 - 2029 (1)

Enzyme Classification Name

	Hydrolases (8)
	Transferases (8)
	Oxidoreductases (3)
	Ligases (1)
	Lyases (1)

Membrane Protein Annotation

	MemProtMD (8)
	PDBTM (8)
	mpstruc (8)
	OPM (2)

Symmetry Type

	Asymmetric (35)
	Cyclic (18)
	Dihedral (1)

SCOP Classification

	All beta proteins (7)
	Artifacts (8)
	Alpha and beta proteins (a/b) (7)
	All alpha proteins (1)
	Alpha and beta proteins (a+b) (3)
	Coiled coil proteins (1)

AllSelected

1 to 25 of 54 Structures

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2GYU \| pdb_00002gyu	Download File View File

Crystal structure of Mus musculus Acetylcholinesterase in complex with HI-6

Pang, Y.P., Boman, M., Artursson, E., Akfur, C., Lundberg, S.

(2006) Biochem Pharmacol 72: 597-607

Released	2006-08-15
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Mus musculus
Macromolecule	Acetylcholinesterase (protein)
Unique Ligands	HI6, NAG, P4G, P6G
Unique branched monosaccharides	FUC, NAG

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2JGL \| pdb_00002jgl	Download File View File

Crystal structure of mouse acetylcholinesterase inhibited by aged VX and sarin

Hornberg, A., Tunemalm, A.-K., Ekstrom, F.

(2007) Biochemistry 46: 4815

Released	2007-04-17
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Mus musculus
Macromolecule	ACETYLCHOLINESTERASE (protein)
Unique Ligands	NAG, P4G, P6G, PGE

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2WHR \| pdb_00002whr	Download File View File

Crystal structure of acetylcholinesterase in complex with K027

Ekstrom, F., Hornberg, A., Artursson, E., Hammarstrom, L.-G., Schneider, G., Pang, Y.-P.

(2009) PLoS One 4: E5957

Released	2009-05-26
Method	X-RAY DIFFRACTION 2.545 Å
Organisms	Mus musculus
Macromolecule	ACETYLCHOLINESTERASE (protein)
Unique Ligands	BR, CO3, K27, NAG, P4G, PE4, PEG

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3BMX \| pdb_00003bmx	Download File View File

Beta-N-hexosaminidase (YbbD) from Bacillus subtilis

Fischer, S.

(2010) J Biological Chem 285: 35675-35684

Released	2008-12-16
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Bacillus subtilis
Macromolecule	Uncharacterized lipoprotein ybbD (protein)
Unique Ligands	ACT, NA, P4G

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3CI6 \| pdb_00003ci6	Download File View File

Crystal structure of the GAF domain from Acinetobacter phosphoenolpyruvate-protein phosphotransferase

Cuff, M.E., Shackelford, G., Kim, Y., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

To be published

Released	2008-05-13
Method	X-RAY DIFFRACTION 1.55 Å
Organisms	Acinetobacter baylyi ADP1
Macromolecule	Phosphoenolpyruvate-protein phosphotransferase (protein)
Unique Ligands	GOL, P4G, PEG

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3WMR \| pdb_00003wmr	Download File View File

Crystal structure of VinJ

Shinohara, Y., Miyanaga, A., Kudo, F., Eguchi, T.

(2014) FEBS Lett 588: 995-1000

Released	2014-02-05
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Streptomyces halstedii
Macromolecule	Proline iminopeptidase (protein)
Unique Ligands	GOL, P4G

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4BWC \| pdb_00004bwc	Download File View File

X-ray structure of a phospholiapse B like protein 1 from bovine kidneys

Repo, H., Kuokkanen, E., Oksanen, E., Goldman, A., Heikinheimo, P.

(2014) Proteins 82: 300

Released	2013-09-18
Method	X-RAY DIFFRACTION 1.89 Å
Organisms	Bos taurus
Macromolecule	PHOSPHOLIPASE B-LIKE 1 (protein)
Unique Ligands	CL, NAG, P4G, P6G
Unique branched monosaccharides	NAG

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4K3X \| pdb_00004k3x	Download File View File

Crystal structure of a subtype H18 hemagglutinin homologue from A/flat-faced bat/Peru/033/2010 (H18N11)

Zhu, X., Wilson, I.A.

(2013) PLoS Pathog 9: e1003657-e1003657

Released	2013-10-23
Method	X-RAY DIFFRACTION 2.149 Å
Organisms	Influenza A virus
Macromolecule	Hemagglutinin HA1 (protein) Hemagglutinin HA2 (protein)
Unique Ligands	NAG, P4G
Unique branched monosaccharides	BMA, FUC, FUL, MAN, NAG

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4ONY \| pdb_00004ony	Download File View File

Crystal structure of a ABC transporter, periplasmic substrate-binding protein from Brucella melitensis

Seattle Structural Genomics Center for Infectious Disease (SSGCID), Seattle Structural Genomics Center for Infectious Disease (SSGCID)

To be published

Released	2014-06-18
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Brucella melitensis ATCC 23457
Macromolecule	Extracellular solute-binding protein family 5 (protein)
Unique Ligands	CL, GOL, P4G

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4PBT \| pdb_00004pbt	Download File View File

Crystal structure of the M. jannaschii G2 tRNA synthetase variant bound to 4-trans-cyclooctene-amidopheylalanine (Tco-amF)

Cooley, R.B., Karplus, P.A., Mehl, R.A.

(2014) Chembiochem 15: 1810-1819

Released	2014-07-23
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Methanocaldococcus jannaschii DSM 2661
Macromolecule	Tyrosine--tRNA ligase (protein)
Unique Ligands	2LQ, GOL, P4G

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4PQN \| pdb_00004pqn	Download File View File

ITK kinase domain with compound GNE-9822

McEwan, P.A., Barker, J.J., Eigenbrot, C.

(2014) J Med Chem 57: 5714-5727

Released	2014-07-02
Method	X-RAY DIFFRACTION 1.71 Å
Organisms	Homo sapiens
Macromolecule	Tyrosine-protein kinase ITK/TSK (protein)
Unique Ligands	2W6, P4G

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4R23 \| pdb_00004r23	Download File View File

Structure of a putative peptidoglycan glycosyltransferase from Atopobium parvulum in complex with dicloxacillin

Filippova, E.V., Minasov, G., Kiryukhina, O., Clancy, S., Joachimiak, A., Anderson, W.F., Midwest Center for Structural Genomics (MCSG)

To be published

Released	2014-09-17
Method	X-RAY DIFFRACTION 1.84 Å
Organisms	Lancefieldella parvula DSM 20469
Macromolecule	Peptidoglycan glycosyltransferase (protein)
Unique Ligands	DXU, EDO, P4G

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4UE8 \| pdb_00004ue8	Download File View File

Complex of D. melanogaster eIF4E with the 4E binding protein Thor

Peter, D., Weichenrieder, O.

(2015) Mol Cell 57: 1074

Released	2015-02-25
Method	X-RAY DIFFRACTION 1.1 Å
Organisms	Drosophila melanogaster
Macromolecule	4E-BINDING PROTEIN THOR (protein) EUKARYOTIC TRANSLATION INITIATION FACTOR 4E (protein)
Unique Ligands	NA, P4G

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4US5 \| pdb_00004us5	Download File View File

Crystal Structure of apo-MsnO8

Maier, S., Pflueger, T., Loesgen, S., Asmus, K., Broetz, E., Paululat, T., Zeeck, A., Andrade, S., Bechthold, A.

(2014) Chembiochem 15: 749

Released	2014-07-16
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Streptomyces bottropensis
Macromolecule	LUCIFERASE-LIKE MONOOXYGENASE (protein)
Unique Ligands	BGC, CL, EPE, NA, P4G

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4XP1 \| pdb_00004xp1	Download File View File

X-ray structure of Drosophila dopamine transporter bound to neurotransmitter dopamine

Gouaux, E., Penmatsa, A., Wang, K.

(2015) Nature 521: 322-327

Released	2015-05-06
Method	X-RAY DIFFRACTION 2.89 Å
Organisms	Drosophila melanogaster Mus musculus
Macromolecule	Antibody fragment light chain (protein) Dopamine transporter, isoform B (protein) antibody fragment heavy chain (protein)
Unique Ligands	CL, CLR, EDO, LDP, NA, NAG, P4G, Y01
Unique branched monosaccharides	GLC

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4XP4 \| pdb_00004xp4	Download File View File

X-ray structure of Drosophila dopamine transporter in complex with cocaine

Aravind, P., Wang, K., Gouaux, E.

(2015) Nature 521: 322-327

Released	2015-05-06
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Drosophila melanogaster Mus musculus
Macromolecule	ANTIBODY FRAGMENT HEAVY CHAIN-PROTEIN, 9D5-HEAVY CHAIN (protein) ANTIBODY FRAGMENT HEAVY CHAIN-PROTEIN, 9D5-LIGHT CHAIN (protein) Dopamine transporter (protein)
Unique Ligands	CL, CLR, COC, NA, P4G, Y01
Unique branched monosaccharides	GLC

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4XP5 \| pdb_00004xp5	Download File View File

X-ray structure of Drosophila dopamine transporter bound to cocaine analogue-RTI55

Gouaux, E., Penmatsa, A., Wang, K.

(2015) Nature 521: 322-327

Released	2015-05-06
Method	X-RAY DIFFRACTION 3.3 Å
Organisms	Drosophila melanogaster Mus musculus
Macromolecule	Antibody fragment heavy chain-protein, 9D5-heavy chain (protein) Dopamine transporter, isoform B (protein) Ighg protein (protein)
Unique Ligands	42F, CL, CLR, NA, P4G
Unique branched monosaccharides	GLC

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4XP9 \| pdb_00004xp9	Download File View File

X-ray structure of Drosophila dopamine transporter bound to psychostimulant D-amphetamine

Aravind, P., Wang, K., Gouaux, E.

(2015) Nature 521: 322-327

Released	2015-05-06
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Drosophila melanogaster Mus musculus
Macromolecule	ANTIBODY FRAGMENT HEAVY CHAIN-PROTEIN, 9D5-HEAVY CHAIN (protein) ANTIBODY FRAGMENT LIGHT CHAIN-PROTEIN, 9D5-LIGHT CHAIN (protein) Transporter (protein)
Unique Ligands	1WE, CL, CLR, MPO, NA, NAG, P4G, Y01
Unique branched monosaccharides	GLC

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4XPF \| pdb_00004xpf	Download File View File

X-ray structure of Drosophila dopamine transporter with subsiteB mutations (D121G/S426M) bound to RTI-55

Penmatsa, A., Wang, K.H., Gouaux, E.

(2015) Nature 521: 322-327

Released	2015-05-06
Method	X-RAY DIFFRACTION 3.273 Å
Organisms	Drosophila melanogaster Mus musculus
Macromolecule	ANTIBODY FRAGMENT HEAVY CHAIN-PROTEIN, 9D5-HEAVY CHAIN (protein) ANTIBODY FRAGMENT LIGHT CHAIN-PROTEIN, 9D5-LIGHT CHAIN (protein) Dopamine transporter-protein (protein)
Unique Ligands	42F, CL, CLR, DMU, NA, P4G

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4XPH \| pdb_00004xph	Download File View File

X-ray structure of Drosophila dopamine transporter with subsiteB mutations (D121G/S426M) bound to 3,4dichlorophenethylamine

Penmatsa, A., Wang, K., Gouaux, E.

(2015) Nature 521: 322-327

Released	2015-05-06
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Drosophila melanogaster Mus musculus
Macromolecule	Antibody fragment heavy chain (protein) Antibody fragment light chain (protein) Transporter (protein)
Unique Ligands	42J, CL, CLR, NA, P4G
Unique branched monosaccharides	BGC, GLC

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5CMZ \| pdb_00005cmz	Download File View File

Artificial HIV fusion inhibitor AP3 fused to the C-terminus of gp41 NHR

Zhu, Y., Ye, S., Zhang, R.

(2015) Sci Rep 5: 13028-13028

Released	2015-09-16
Method	X-RAY DIFFRACTION 2.574 Å
Organisms	Human immunodeficiency virus 1 synthetic construct
Macromolecule	Artificial HIV entry inhibitor AP3 (protein) Envelope glycoprotein (protein)
Unique Ligands	EDO, P4G, SO4

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5G3O \| pdb_00005g3o	Download File View File

Bacillus cereus formamidase (BceAmiF) inhibited with urea.

Gavira, J.A., Martinez-Rodriguez, S., Conejero-Muriel, M.

(2019) Arch Biochem Biophys 662: 151-159

Released	2017-04-12
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Bacillus cereus
Macromolecule	FORMAMIDASE (protein)
Unique Ligands	P4G, PEG, PG4, PO4

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5IH2 \| pdb_00005ih2	Download File View File

Structure, thermodynamics, and the role of conformational dynamics in the interactions between the N-terminal SH3 domain of CrkII and proline-rich motifs in cAbl

Bhatt, V.S., Zeng, D., Krieger, I., Sacchettini, J.C., Cho, J.-H.

(2016) Biophys J 110: 2630-2641

Released	2016-06-29
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Endothia gyrosa Mus musculus
Macromolecule	Adapter molecule crk (protein) Proline rich Peptide (protein)
Unique Ligands	NA, P4G, PEG

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5LXM \| pdb_00005lxm	Download File View File

Crystal structure of Aurora-A bound to a hydrocarbon-stapled proteomimetic of TPX2

McIntyre, P.J., Bayliss, R.

(2016) ACS Chem Biol 11: 3383-3390

Released	2016-11-02
Method	X-RAY DIFFRACTION 2.08 Å
Organisms	Homo sapiens
Macromolecule	Aurora kinase A (protein) Targeting protein for Xklp2 (protein)
Unique Ligands	ADP, CL, MES, MG, P4G, PEG, PG4, SO4

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5OEX \| pdb_00005oex	Download File View File

Complex with iodine ion for thiocyanate dehydrogenase from Thioalkalivibrio paradoxus

Polyakov, K.M., Tsallagov, S.I., Tikhonova, T.V., Popov, V.O.

To be published

Released	2018-08-01
Method	X-RAY DIFFRACTION 2 Å
Organisms	Thioalkalivibrio paradoxus ARh 1
Macromolecule	THIOCYANATE DEHYDROGENASE (protein)
Unique Ligands	CU, EDO, GOL, IOD, P4G

1 to 25 of 54 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

2GYU | pdb_00002gyu

2JGL | pdb_00002jgl

2WHR | pdb_00002whr

3BMX | pdb_00003bmx

3CI6 | pdb_00003ci6

3WMR | pdb_00003wmr

4BWC | pdb_00004bwc

4K3X | pdb_00004k3x

4ONY | pdb_00004ony

4PBT | pdb_00004pbt

4PQN | pdb_00004pqn

4R23 | pdb_00004r23

4UE8 | pdb_00004ue8

4US5 | pdb_00004us5

4XP1 | pdb_00004xp1

4XP4 | pdb_00004xp4

4XP5 | pdb_00004xp5

4XP9 | pdb_00004xp9

4XPF | pdb_00004xpf

4XPH | pdb_00004xph

5CMZ | pdb_00005cmz

5G3O | pdb_00005g3o

5IH2 | pdb_00005ih2

5LXM | pdb_00005lxm

5OEX | pdb_00005oex