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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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Search Summary

This query matches 2,220 Structures.

Refinements

Structure Determination Methodology

experimental (2,220)

Scientific Name of Source Organism

	Homo sapiens (372)
	synthetic construct (108)
	Escherichia coli (69)
	Cricetulus griseus (67)
	Escherichia coli K-12 (63)
	Mus musculus (54)
	Drosophila melanogaster (52)
	Thermus thermophilus HB8 (52)
	Burkholderia pseudomallei 1710b (51)
	Zika virus (39)

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Taxonomy

	Bacteria (1,069)
	Eukaryota (898)
	Archaea (114)
	other sequences (110)
	Riboviria (84)
	Duplodnaviria (15)
	Eukaryota (eukaryotes) (12)
	Varidnaviria (8)
	unclassified sequences (8)
	Riboviria (RNA viruses and viroids) (6)

More...

Experimental Method

	X-RAY DIFFRACTION (2,219)
	NEUTRON DIFFRACTION (3)
	ELECTRON CRYSTALLOGRAPHY (1)

Polymer Entity Type

	Protein (2,207)
	DNA (68)
	RNA (65)

Refinement Resolution (Å)

	0.5 - 1.0 (15)
	1.0 - 1.5 (351)
	1.5 - 2.0 (1,032)
	2.0 - 2.5 (548)
	2.5 - 3.0 (225)
	3.0 - 3.5 (45)
	3.5 - 4.0 (5)
	4.0 - 4.5 (1)

Release Date

	1980 - 1984 (2)
	1990 - 1994 (7)
	1995 - 1999 (8)
	2000 - 2004 (153)
	2005 - 2009 (333)
	2010 - 2014 (404)
	2015 - 2019 (731)
	2020 - 2024 (562)
	2025 - 2029 (20)

Enzyme Classification Name

	Hydrolases (501)
	Oxidoreductases (355)
	Transferases (376)
	Lyases (89)
	Isomerases (63)
	Ligases (34)
	Translocases (18)

Membrane Protein Annotation

	PDBTM (64)
	MemProtMD (50)
	OPM (40)
	mpstruc (23)

Symmetry Type

	Asymmetric (1,169)
	Cyclic (884)
	Dihedral (253)
	Octahedral (9)
	Tetrahedral (7)
	Helical (2)

SCOP Classification

	Alpha and beta proteins (a/b) (448)
	All beta proteins (261)
	Alpha and beta proteins (a+b) (242)
	All alpha proteins (207)
	Artifacts (166)
	Multi-domain proteins (alpha and beta) (57)
	Membrane and cell surface proteins and peptides (13)
	Small proteins (23)
	Coiled coil proteins (7)
	Designed proteins (2)

AllSelected

1 to 25 of 2,220 Structures

Page 1 of 89

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1BF6 \| pdb_00001bf6	Download File View File

PHOSPHOTRIESTERASE HOMOLOGY PROTEIN FROM ESCHERICHIA COLI

Buchbinder, J.L., Stephenson, R.C., Scanlan, T.S., Fletterick, R.J.

(1998) Biochemistry 37: 5096-5106

Released	1999-06-08
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Escherichia coli
Macromolecule	PHOSPHOTRIESTERASE HOMOLOGY PROTEIN (protein)
Unique Ligands	GOL, MPD, SO4, ZN

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1BP2 \| pdb_00001bp2	Download File View File

STRUCTURE OF BOVINE PANCREATIC PHOSPHOLIPASE A2 AT 1.7 ANGSTROMS RESOLUTION

Dijkstra, B.W., Kalk, K.H., Hol, W.G.J., Drenth, J.

(1981) J Mol Biology 147: 97-123

Released	1981-05-21
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Bos taurus
Macromolecule	PHOSPHOLIPASE A2 (protein)
Unique Ligands	CA, MPD

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1BYZ \| pdb_00001byz	Download File View File

DESIGNED PEPTIDE ALPHA-1, P1 FORM

Prive, G.G., Anderson, D.H., Wesson, L., Cascio, D., Eisenberg, D.

(1999) Protein Sci 8: 1400-1409

Released	1998-10-28
Method	X-RAY DIFFRACTION 0.9 Å
Organisms	synthetic construct
Macromolecule	PROTEIN (SYNTHETIC DESIGNED PEPTIDE "ALPHA-1") (protein)
Unique Ligands	CL, ETA, MPD, MRD

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1CXL \| pdb_00001cxl	Download File View File

COMPLEX BETWEEN A COVALENT INTERMEDIATE AND BACILLUS CIRCULANS STRAIN 251 CGTASE E257Q

Uitdehaag, J.C.M., Dijkstra, B.W.

(1999) Nat Struct Biol 6: 432-436

Released	1999-05-03
Method	X-RAY DIFFRACTION 1.81 Å
Organisms	Niallia circulans
Macromolecule	PROTEIN (CYCLODEXTRIN-GLYCOSYLTRANSFERASE) (protein)
Unique Ligands	CA, MPD
Unique branched monosaccharides	G4D, GLC, GLF

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1D3C \| pdb_00001d3c	Download File View File

MICHAELIS COMPLEX OF BACILLUS CIRCULANS STRAIN 251 CYCLODEXTRIN GLYCOSYLTRANSFERASE WITH GAMMA-CYCLODEXTRIN

Uitdehaag, J.C.M., Kalk, K.H., van der Veen, B.A., Dijkhuizen, L., Dijkstra, B.W.

(1999) J Biological Chem 274: 34868-34876

Released	1999-12-22
Method	X-RAY DIFFRACTION 1.78 Å
Organisms	Niallia circulans
Macromolecule	CYCLODEXTRIN GLYCOSYLTRANSFERASE (protein)
Unique Ligands	CA, MPD
Unique branched monosaccharides	GLC

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1DLU \| pdb_00001dlu	Download File View File

UNLIGANDED BIOSYNTHETIC THIOLASE FROM ZOOGLOEA RAMIGERA

Modis, Y., Wierenga, R.K.

(2000) J Mol Biology 297: 1171-1182

Released	2000-04-24
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Zoogloea ramigera
Macromolecule	BIOSYNTHETIC THIOLASE (protein)
Unique Ligands	MPD, SO4

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1DUV \| pdb_00001duv	Download File View File

CRYSTAL STRUCTURE OF E. COLI ORNITHINE TRANSCARBAMOYLASE COMPLEXED WITH NDELTA-L-ORNITHINE-DIAMINOPHOSPHINYL-N-SULPHONIC ACID (PSORN)

Langley, D.B., Templeton, M.D., Fields, B.A., Mitchell, R.E., Collyer, C.A.

(2000) J Biological Chem 275: 20012-20019

Released	2000-07-04
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Escherichia coli
Macromolecule	ORNITHINE TRANSCARBAMOYLASE (protein)
Unique Ligands	MPD, PSQ

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1E6C \| pdb_00001e6c	Download File View File

K15M MUTANT OF SHIKIMATE KINASE FROM ERWINIA CHRYSANTHEMI

Maclean, J., Krell, T., Coggins, J.R., Lapthorn, A.J.

(2001) Protein Sci 10: 1137

Released	2001-06-20
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Dickeya chrysanthemi
Macromolecule	SHIKIMATE KINASE (protein)
Unique Ligands	CL, MPD, MRD, PO4

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1EB8 \| pdb_00001eb8	Download File View File

Structure Determinants of Substrate Specificity of Hydroxynitrile Lyase from Manihot esculenta

Lauble, H., Miehlich, B., Foerster, S., Kobler, C., Wajant, H., Effenberger, F.

(2002) Protein Sci 11: 65

Released	2002-01-01
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Manihot esculenta
Macromolecule	(S)-ACETONE-CYANOHYDRIN LYASE (protein)
Unique Ligands	MPD

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1EM6 \| pdb_00001em6	Download File View File

HUMAN LIVER GLYCOGEN PHOSPHORYLASE A COMPLEXED WITH GLCNAC AND CP-526,423

Rath, V.L., Ammirati, M., Danley, D.E., Ekstrom, J.L., Hynes, T.R., Olson, T.V., Hoover, D.J.

(2000) Chem Biol 7: 677-682

Released	2000-11-01
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens
Macromolecule	LIVER GLYCOGEN PHOSPHORYLASE (protein)
Unique Ligands	CP4, MPD, NBG, PLP

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1EMS \| pdb_00001ems	Download File View File

CRYSTAL STRUCTURE OF THE C. ELEGANS NITFHIT PROTEIN

Pace, H.C., Hodawadekar, S.C., Draganescu, A., Huang, J., Bieganowski, P., Pekarsky, Y., Croce, C.M., Brenner, C.

(2000) Curr Biol 10: 907-917

Released	2000-07-20
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Caenorhabditis elegans
Macromolecule	NIT-FRAGILE HISTIDINE TRIAD FUSION PROTEIN (protein)
Unique Ligands	EMC, MPD, NA

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1EO5 \| pdb_00001eo5	Download File View File

Bacillus circulans strain 251 cyclodextrin glycosyltransferase in complex with maltoheptaose

Uitdehaag, J.C.M., Dijkstra, B.W.

(2000) Biochemistry 39: 7772-7780

Released	2000-11-22
Method	X-RAY DIFFRACTION 2 Å
Organisms	Niallia circulans
Macromolecule	PROTEIN (CYCLODEXTRIN GLYCOSYLTRANSFERASE) (protein)
Unique Ligands	CA, MPD
Unique branched monosaccharides	BGC, GLC

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1EXV \| pdb_00001exv	Download File View File

HUMAN LIVER GLYCOGEN PHOSPHORYLASE A COMPLEXED WITH GLCNAC AND CP-403,700

Rath, V.L., Ammirati, M., Danley, D.E., Ekstrom, J.L., Hynes, T.R., Olson, T.V., Hoover, D.J.

(2000) Chem Biol 7: 677-682

Released	2000-11-01
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens
Macromolecule	LIVER GLYCOGEN PHOSPHORYLASE (protein)
Unique Ligands	700, MPD, NBG, PLP

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1F07 \| pdb_00001f07	Download File View File

STRUCTURE OF COENZYME F420 DEPENDENT TETRAHYDROMETHANOPTERIN REDUCTASE FROM METHANOBACTERIUM THERMOAUTOTROPHICUM

Shima, S., Warkentin, E., Grabarse, W., Thauer, R.K., Ermler, U.

(2000) J Mol Biology 300: 935-950

Released	2000-09-06
Method	X-RAY DIFFRACTION 2 Å
Organisms	Methanothermobacter thermautotrophicus
Macromolecule	COENZYME F420-DEPENDENT N5,N10-METHYLENETETRAHYDROMETHANOPTERIN REDUCTASE (protein)
Unique Ligands	CL, MPD, MPO

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1F0N \| pdb_00001f0n	Download File View File

MYCOBACTERIUM TUBERCULOSIS ANTIGEN 85B

Anderson, D.H., Harth, G., Horwitz, M.A., Eisenberg, D., TB Structural Genomics Consortium (TBSGC)

(2001) J Mol Biology 307: 671-681

Released	2001-01-24
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Mycobacterium tuberculosis
Macromolecule	ANTIGEN 85B (protein)
Unique Ligands	MES, MPD

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1F0P \| pdb_00001f0p	Download File View File

MYCOBACTERIUM TUBERCULOSIS ANTIGEN 85B WITH TREHALOSE

Anderson, D.H., Harth, G., Horwitz, M.A., Eisenberg, D., TB Structural Genomics Consortium (TBSGC)

(2001) J Mol Biology 307: 671-681

Released	2001-01-24
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Mycobacterium tuberculosis
Macromolecule	ANTIGEN 85-B (protein)
Unique Ligands	MES, MPD
Unique branched monosaccharides	GLC

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1F1H \| pdb_00001f1h	Download File View File

CRYSTAL STRUCTURE OF GLUTAMINE SYNTHETASE FROM SALMONELLA TYPHIMURIUM WITH THALLIUM IONS

Gill, H.S., Eisenberg, D.

(2001) Biochemistry 40: 1903-1912

Released	2001-04-04
Method	X-RAY DIFFRACTION 2.67 Å
Organisms	Salmonella enterica subsp. enterica serovar Typhimurium
Macromolecule	PROTEIN (GLUTAMINE SYNTHETASE) (protein)
Unique Ligands	ADP, MN, MPD, TL

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1F34 \| pdb_00001f34	Download File View File

CRYSTAL STRUCTURE OF ASCARIS PEPSIN INHIBITOR-3 BOUND TO PORCINE PEPSIN

Ng, K.K., Petersen, J.F., Cherney, M.M., Garen, C., James, M.N.

(2000) Nat Struct Biol 7: 653-657

Released	2001-02-01
Method	X-RAY DIFFRACTION 2.45 Å
Organisms	Ascaris suum Sus scrofa
Macromolecule	MAJOR PEPSIN INHIBITOR PI-3 (protein) PEPSIN A (protein)
Unique Ligands	MPD

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1F4N \| pdb_00001f4n	Download File View File

C2 CRYSTAL STRUCTURE OF ALA2ILE2-6, A VERSION OF ROP WITH A REPACKED HYDROPHOBIC CORE AND A NEW FOLD.

Willis, M.A., Bishop, B., Regan, L., Brunger, A.T.

(2000) Structure 8: 1319-1328

Released	2001-01-10
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Escherichia coli
Macromolecule	ROP ALA2ILE2-6 (protein)
Unique Ligands	CA, MPD

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1F52 \| pdb_00001f52	Download File View File

CRYSTAL STRUCTURE OF GLUTAMINE SYNTHETASE FROM SALMONELLA TYPHIMURIUM CO-CRYSTALLIZED WITH ADP

Gill, H.S., Pfluegl, G.M.U., Eisenberg, D.

(2001) Biochemistry 40: 1903-1912

Released	2000-06-28
Method	X-RAY DIFFRACTION 2.49 Å
Organisms	Salmonella enterica subsp. enterica serovar Typhimurium
Macromolecule	GLUTAMINE SYNTHETASE (protein)
Unique Ligands	ADP, MN, MPD

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1FZJ \| pdb_00001fzj	Download File View File

MHC CLASS I NATURAL MUTANT H-2KBM1 HEAVY CHAIN COMPLEXED WITH BETA-2 MICROGLOBULIN AND VESICULAR STOMATITIS VIRUS NUCLEOPROTEIN

Rudolph, M.G., Speir, J.A., Brunmark, A., Mattsson, N., Jackson, M.R., Peterson, P.A., Teyton, L., Wilson, I.A.

(2001) Immunity 14: 231-242

Released	2001-03-28
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Mus musculus Vesicular stomatitis Indiana virus (strain Glasgow)
Macromolecule	BETA-2-MICROGLOBULIN (protein) H-2 CLASS I HISTOCOMPATIBILITY ANTIGEN, K-B ALPHA CHAIN (protein) NUCLEOCAPSID PROTEIN (protein)
Unique Ligands	MPD, NAG, PO4
Unique branched monosaccharides	FUL, NAG

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1FZK \| pdb_00001fzk	Download File View File

MHC CLASS I NATURAL MUTANT H-2KBM1 HEAVY CHAIN COMPLEXED WITH BETA-2 MICROGLOBULIN AND SENDAI VIRUS NUCLEOPROTEIN

Rudolph, M.G., Speir, J.A., Brunmark, A., Mattsson, N., Jackson, M.R., Peterson, P.A., Teyton, L., Wilson, I.A.

(2001) Immunity 14: 231-242

Released	2001-03-28
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Mus musculus Sendai virus (strain Enders)
Macromolecule	H-2 CLASS I HISTOCOMPATIBILITY ANTIGEN, K-B ALPHA CHAIN (protein) PROTEIN (BETA-2-MICROGLOBULIN) (protein) PROTEIN (NUCLEOCAPSID PROTEIN) (protein)
Unique Ligands	MPD, MRD, NAG, PO4
Unique branched monosaccharides	FUL, NAG

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1FZM \| pdb_00001fzm	Download File View File

MHC CLASS I NATURAL MUTANT H-2KBM8 HEAVY CHAIN COMPLEXED WITH BETA-2 MICROGLOBULIN AND VESICULAR STOMATITIS VIRUS NUCLEOPROTEIN

Rudolph, M.G., Speir, J.A., Brunmark, A., Mattsson, N., Jackson, M.R., Peterson, P.A., Teyton, L., Wilson, I.A.

(2001) Immunity 14: 231-242

Released	2001-03-28
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Mus musculus Vesicular stomatitis Indiana virus (strain Glasgow)
Macromolecule	H-2 CLASS I HISTOCOMPATIBILITY ANTIGEN, K-B ALPHA CHAIN (protein) PROTEIN (BETA-2-MICROGLOBULIN) (protein) PROTEIN (NUCLEOCAPSID PROTEIN) (protein)
Unique Ligands	MPD, MRD, NAG, PO4
Unique branched monosaccharides	FUL, NAG

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1FZO \| pdb_00001fzo	Download File View File

MHC CLASS I NATURAL MUTANT H-2KBM8 HEAVY CHAIN COMPLEXED WITH BETA-2 MICROGLOBULIN AND SENDAI VIRUS NUCLEOPROTEIN

Rudolph, M.G., Speir, J.A., Brunmark, A., Mattsson, N., Jackson, M.R., Peterson, P.A., Teyton, L., Wilson, I.A.

(2001) Immunity 14: 231-242

Released	2001-03-28
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Mus musculus Sendai virus (strain Enders)
Macromolecule	H-2 CLASS I HISTOCOMPATIBILITY ANTIGEN, K-B ALPHA CHAIN (protein) PROTEIN (BETA-2-MICROGLOBULIN) (protein) PROTEIN (NUCLEOCAPSID PROTEIN) (protein)
Unique Ligands	MPD, MRD, NAG, PO4
Unique branched monosaccharides	FUL, NAG