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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Chemical ID(s) = BU1

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Search Summary

This query matches 86 Structures.

Refinements

Structure Determination Methodology

experimental (86)

Scientific Name of Source Organism

	Homo sapiens (18)
	Mus musculus (6)
	Pseudomonas aeruginosa PAO1 (5)
	Tequatrovirus T4 (5)
	Arabidopsis thaliana (4)
	Drosophila melanogaster (4)
	Pyrococcus horikoshii OT3 (4)
	Gloydius halys (3)
	Vibrio cholerae O1 biovar El Tor str. N16961 (3)
	synthetic construct (3)

More...

Taxonomy

	Eukaryota (45)
	Bacteria (33)
	Archaea (6)
	Duplodnaviria (5)
	other sequences (3)
	Riboviria (1)

Experimental Method

X-RAY DIFFRACTION (86)

Polymer Entity Type

	Protein (86)
	DNA (4)
	RNA (2)

Refinement Resolution (Å)

	1.0 - 1.5 (9)
	1.5 - 2.0 (32)
	2.0 - 2.5 (30)
	2.5 - 3.0 (12)
	3.0 - 3.5 (2)
	3.5 - 4.0 (1)

Release Date

	1995 - 1999 (1)
	2000 - 2004 (4)
	2005 - 2009 (9)
	2010 - 2014 (27)
	2015 - 2019 (25)
	2020 - 2024 (18)
	2025 - 2029 (2)

Enzyme Classification Name

	Hydrolases (28)
	Transferases (10)
	Oxidoreductases (8)
	Ligases (6)
	Lyases (6)
	Isomerases (1)
	Translocases (1)

Membrane Protein Annotation

	MemProtMD (7)
	PDBTM (7)
	OPM (5)
	mpstruc (4)

Symmetry Type

	Asymmetric (46)
	Cyclic (37)
	Dihedral (13)
	Tetrahedral (1)

SCOP Classification

	Alpha and beta proteins (a+b) (13)
	All alpha proteins (13)
	All beta proteins (5)
	Artifacts (7)
	Alpha and beta proteins (a/b) (4)
	Membrane and cell surface proteins and peptides (3)
	Multi-domain proteins (alpha and beta) (1)
	Small proteins (1)

AllSelected

1 to 25 of 86 Structures

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1BK9 \| pdb_00001bk9	Download File View File

PHOSPHOLIPASE A2 MODIFIED BY PBPB

Zhao, H., Tang, L., Wang, X., Lin, Z., Zhou, Y.

(1998) Toxicon 36: 875-886

Released	1999-03-02
Method	X-RAY DIFFRACTION 2 Å
Organisms	Gloydius halys
Macromolecule	PHOSPHOLIPASE A2 (protein)
Unique Ligands	BU1, CA, PBP

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1M8R \| pdb_00001m8r	Download File View File

Crystal Structures of Cadmium-binding Acidic Phospholipase A2 from the Venom of Agkistrodon halys pallas at 1.9 Resolution (crystal grown at pH 7.4)

Xu, S., Gu, L., Zhou, Y., Lin, Z.

(2003) Biochem Biophys Res Commun 300: 271-277

Released	2003-02-11
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Gloydius halys
Macromolecule	phospholipase A2 (protein)
Unique Ligands	BU1, CD

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1M8S \| pdb_00001m8s	Download File View File

Crystal Structures of Cadmium-binding Acidic Phospholipase A2 from the Venom of Agkistrodon halys pallas at 1.9 Resolution (crystal grown at pH 5.9)

Xu, S., Gu, L., Zhou, Y., Lin, Z.

(2003) Biochem Biophys Res Commun 300: 271-277

Released	2003-02-11
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Gloydius halys
Macromolecule	phospholipase a2 (protein)
Unique Ligands	BU1, CD

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1TZP \| pdb_00001tzp	Download File View File

MEPA, inactive form without ZN in P21

Marcyjaniak, M., Odintsov, S.G., Sabala, I., Bochtler, M.

(2004) J Biological Chem 279: 43982-43989

Released	2004-09-07
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Escherichia coli
Macromolecule	Penicillin-insensitive murein endopeptidase (protein)
Unique Ligands	BU1, SO4

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1VIO \| pdb_00001vio	Download File View File

Crystal structure of pseudouridylate synthase

Structural GenomiX

(2005) Acta Crystallogr Sect F Struct Biol Cryst Commun 61: 350-354

Released	2003-12-30
Method	X-RAY DIFFRACTION 1.59 Å
Organisms	Haemophilus influenzae
Macromolecule	Ribosomal small subunit pseudouridine synthase A (protein)
Unique Ligands	BU1

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1X9D \| pdb_00001x9d	Download File View File

Crystal Structure Of Human Class I alpha-1,2-Mannosidase In Complex With Thio-Disaccharide Substrate Analogue

Karaveg, K., Tempel, W., Liu, Z.J., Siriwardena, A., Moremen, K.W., Wang, B.C.

(2005) J Biological Chem 280: 16197-16207

Released	2005-02-22
Method	X-RAY DIFFRACTION 1.41 Å
Organisms	Homo sapiens
Macromolecule	Endoplasmic reticulum mannosyl-oligosaccharide 1,2-alpha-mannosidase (protein)
Unique Ligands	BU1, CA, SO4
Unique branched monosaccharides	MAN, Z5L

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2B9Y \| pdb_00002b9y	Download File View File

Crystal structure of CLA-producing fatty acid isomerase from P. acnes

Rudolph, M.G., Liavonchanka, A.

(2006) Proc Natl Acad Sci U S A 103: 2576-2581

Released	2006-01-31
Method	X-RAY DIFFRACTION 2.21 Å
Organisms	Cutibacterium acnes
Macromolecule	putative aminooxidase (protein)
Unique Ligands	BU1, CL, FAD, SO4

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2BAB \| pdb_00002bab	Download File View File

Crystal structure of CLA-producing fatty acid isomerase from P. acnes

Rudolph, M.G., Liavonchanka, A.

(2006) Proc Natl Acad Sci U S A 103: 2576-2581

Released	2006-01-31
Method	X-RAY DIFFRACTION 2 Å
Organisms	Cutibacterium acnes
Macromolecule	putative aminooxidase (protein)
Unique Ligands	BU1, FAD, ODD, SO4

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2HW8 \| pdb_00002hw8	Download File View File

Structure of ribosomal protein L1-mRNA complex at 2.1 resolution.

Tishchenko, S., Nikonova, E., Nikulin, A., Nevskaya, N., Volchkov, S., Piendl, W., Garber, M., Nikonov, S.

(2006) Acta Crystallogr D Biol Crystallogr 62: 1545-1554

Released	2006-12-19
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Thermus thermophilus
Macromolecule	50S ribosomal protein L1 (protein) 36-MER (nucleic acid)
Unique Ligands	BU1, K, MG

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2RH1 \| pdb_00002rh1	Download File View File

High resolution crystal structure of human B2-adrenergic G protein-coupled receptor.

Cherezov, V., Rosenbaum, D.M., Hanson, M.A., Rasmussen, S.G.F., Thian, F.S., Kobilka, T.S., Choi, H.J., Kuhn, P., Weis, W.I., Kobilka, B.K., Stevens, R.C., Accelerated Technologies Center for Gene to 3D Structure (ATCG3D), GPCR Network (GPCR)

(2007) Science 318: 1258-1265

Released	2007-10-30
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens Tequatrovirus T4
Macromolecule	beta-2-adrenergic receptor/T4-lysozyme chimera (protein)
Unique Ligands	12P, ACM, BU1, CAU, CLR, PLM, SO4
Unique branched monosaccharides	GLC

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2W62 \| pdb_00002w62	Download File View File

Saccharomyces cerevisiae Gas2p in complex with laminaripentaose

Schuettelkopf, A.W., Hurtado-Guerrero, R., van Aalten, D.M.F.

(2009) J Biological Chem 284: 8461

Released	2009-01-27
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	GLYCOLIPID-ANCHORED SURFACE PROTEIN 2 (protein)
Unique Ligands	BU1
Unique branched monosaccharides	BGC

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2X2U \| pdb_00002x2u	Download File View File

First two Cadherin-like domains from Human RET

Kjaer, S., Hanrahan, S., Purkiss-Trew, A.G., Totty, N., McDonald, N.Q.

(2010) Nat Struct Mol Biol 17: 726-731

Released	2010-05-19
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	PROTO-ONCOGENE TYROSINE-PROTEIN KINASE RECEPTOR RET (protein)
Unique Ligands	BU1, SO4, UNX
Unique branched monosaccharides	NAG

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2XAA \| pdb_00002xaa	Download File View File

Alcohol dehydrogenase ADH-'A' from Rhodococcus ruber DSM 44541 at pH 8.5 in complex with NAD and butane-1,4-diol

Kroutil, W., Gruber, K., Grogan, G.

(2010) Chem Commun (Camb) 46: 6314

Released	2010-08-11
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Rhodococcus ruber
Macromolecule	SECONDARY ALCOHOL DEHYDROGENASE (protein)
Unique Ligands	BU1, NAD, ZN

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3CED \| pdb_00003ced	Download File View File

Crystal structure of the C-terminal NIL domain of an ABC transporter protein homologue from Staphylococcus aureus

Cuff, M.E., Bigelow, L., Clancy, S., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

To be published

Released	2008-05-13
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Staphylococcus aureus subsp. aureus Mu50
Macromolecule	Methionine import ATP-binding protein metN 2 (protein)
Unique Ligands	BU1

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3EYC \| pdb_00003eyc	Download File View File

New crystal structure of human tear lipocalin in complex with 1,4-butanediol in space group P21

Breustedt, D.A., Keil, L., Skerra, A.

(2009) Acta Crystallogr D Biol Crystallogr 65: 1118-1125

Released	2009-10-06
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Homo sapiens
Macromolecule	Lipocalin-1 (protein)
Unique Ligands	BU1

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3FNK \| pdb_00003fnk	Download File View File

Crystal structure of the second type II cohesin module from the cellulosomal adaptor ScaA scaffoldin of Acetivibrio cellulolyticus

Noach, I., Frolow, F., Bayer, E.A.

(2009) J Mol Biology 391: 86-97

Released	2009-06-23
Method	X-RAY DIFFRACTION 1.99 Å
Organisms	Acetivibrio cellulolyticus
Macromolecule	Cellulosomal scaffoldin adaptor protein B (protein)
Unique Ligands	ACT, BU1, EDO, PDO

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3K65 \| pdb_00003k65	Download File View File

Crystal Structure of Prethombin-2/Fragment-2 Complex

Adams, T.E., Huntington, J.A.

(2016) Biochimie 122: 235-242

Released	2010-09-29
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Homo sapiens
Macromolecule	Prothrombin (protein)
Unique Ligands	BU1

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3KWO \| pdb_00003kwo	Download File View File

Crystal Structure of Putative Bacterioferritin from Campylobacter jejuni

Kim, Y., Gu, M., Papazisi, L., Anderson, W., Joachimiak, A., Center for Structural Genomics of Infectious Diseases (CSGID)

To be published

Released	2010-01-19
Method	X-RAY DIFFRACTION 1.985 Å
Organisms	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819
Macromolecule	Putative bacterioferritin (protein)
Unique Ligands	ACY, BU1, GOL, ZN

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3LAT \| pdb_00003lat	Download File View File

Crystal structure of Staphylococcus peptidoglycan hydrolase AmiE

Zoll, S., Stehle, T.

(2010) PLoS Pathog 6: e1000807-e1000807

Released	2010-03-23
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Staphylococcus epidermidis
Macromolecule	Bifunctional autolysin (protein)
Unique Ligands	BU1, CL, IMD, ZN

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3NZ2 \| pdb_00003nz2	Download File View File

Crystal Structure of Hexapeptide-Repeat containing-Acetyltransferase VCA0836 Complexed with Acetyl Co Enzyme A from Vibrio cholerae O1 biovar eltor

Kim, Y., Maltseva, N., Hasseman, J., Anderson, W.F., Joachimiak, A., Center for Structural Genomics of Infectious Diseases (CSGID)

To be published

Released	2010-08-04
Method	X-RAY DIFFRACTION 2.35 Å
Organisms	Vibrio cholerae O1 biovar El Tor str. N16961
Macromolecule	Hexapeptide-repeat containing-acetyltransferase (protein)
Unique Ligands	ACO, ACY, BU1, CL, GOL, MG

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3OT2 \| pdb_00003ot2	Download File View File

Crystal structure of a putative nuclease belonging to DUF820 (Ava_3926) from Anabaena variabilis ATCC 29413 at 1.96 A resolution

Joint Center for Structural Genomics (JCSG)

To be published

Released	2010-10-06
Method	X-RAY DIFFRACTION 1.96 Å
Organisms	Trichormus variabilis ATCC 29413
Macromolecule	Uncharacterized protein (protein)
Unique Ligands	ACT, BU1, CL, EDO

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3Q9H \| pdb_00003q9h	Download File View File

LVFFA segment from Alzheimer's Amyloid-Beta displayed on 42-membered macrocycle scaffold

Liu, C., Sawaya, M.R., Eisenberg, D., Nowick, J.S., Cheng, P., Zheng, J.

(2011) J Am Chem Soc 133: 6736-6744

Released	2011-06-08
Method	X-RAY DIFFRACTION 2.25 Å
Macromolecule	Cyclic pseudo-peptide LVFFA(ORN)(HAO)LK(ORN) (protein)
Unique Ligands	BU1, GOL, SO4

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3S3E \| pdb_00003s3e	Download File View File

Crystal structure of the catalytic domain of PTP10D from Drosophila melanogaster

Madan, L.L., Gopal, B.

(2011) Biochemistry 50: 10114-10125

Released	2011-11-02
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Drosophila melanogaster
Macromolecule	Tyrosine-protein phosphatase 10D (protein)
Unique Ligands	1BO, BU1, IPA

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3S3F \| pdb_00003s3f	Download File View File

Crystal Structure of the catalytic domain of PTP10D from Drosophila melanogaster with a small molecule inhibitor Vanadate

Madan, L.L., Gopal, B.

(2011) Biochemistry 50: 10114-10125

Released	2011-11-02
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Drosophila melanogaster
Macromolecule	Tyrosine-protein phosphatase 10D (protein)
Unique Ligands	1BO, BU1, IPA, VO4

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3S3H \| pdb_00003s3h	Download File View File

Crystal structure of the catalytic domain of PTP10D from Drosophila melanogaster with a phosphopeptide substrate GP4

Madan, L.L., Gopal, B.

(2011) Biochemistry 50: 10114-10125

Released	2011-11-02
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Drosophila melanogaster
Macromolecule	Tyrosine-protein phosphatase 10D (protein) phosphopeptide GP4 (protein)
Unique Ligands	1BO, BU1

1 to 25 of 86 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1BK9 | pdb_00001bk9

1M8R | pdb_00001m8r

1M8S | pdb_00001m8s

1TZP | pdb_00001tzp

1VIO | pdb_00001vio

1X9D | pdb_00001x9d

2B9Y | pdb_00002b9y

2BAB | pdb_00002bab

2HW8 | pdb_00002hw8

2RH1 | pdb_00002rh1

2W62 | pdb_00002w62

2X2U | pdb_00002x2u

2XAA | pdb_00002xaa

3CED | pdb_00003ced

3EYC | pdb_00003eyc

3FNK | pdb_00003fnk

3K65 | pdb_00003k65

3KWO | pdb_00003kwo

3LAT | pdb_00003lat

3NZ2 | pdb_00003nz2

3OT2 | pdb_00003ot2

3Q9H | pdb_00003q9h

3S3E | pdb_00003s3e

3S3F | pdb_00003s3f

3S3H | pdb_00003s3h