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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: BIRD Type = "Polypeptide"

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Search Summary

This query matches 127 Structures.

Refinements

Structure Determination Methodology

experimental (127)

Scientific Name of Source Organism

	Brevibacillus brevis (27)
	Homo sapiens (27)
	synthetic construct (24)
	Streptomyces antibioticus (16)
	Helianthus annuus (8)
	Escherichia coli (7)
	Pseudomonas aeruginosa PAO1 (5)
	Severe acute respiratory syndrome-related coronavirus (5)
	Streptomyces sp. (5)
	Streptomyces (4)

More...

Taxonomy

	Bacteria (80)
	Eukaryota (38)
	other sequences (24)
	Riboviria (6)

Experimental Method

	X-RAY DIFFRACTION (93)
	SOLUTION NMR (32)
	SOLID-STATE NMR (2)

Polymer Entity Type

	Protein (126)
	DNA (23)
	Other (1)

Refinement Resolution (Å)

	0.5 - 1.0 (5)
	1.0 - 1.5 (16)
	1.5 - 2.0 (23)
	2.0 - 2.5 (21)
	2.5 - 3.0 (16)
	3.0 - 3.5 (9)
	3.5 - 4.0 (3)

Release Date

	1990 - 1994 (2)
	1995 - 1999 (18)
	2000 - 2004 (27)
	2005 - 2009 (21)
	2010 - 2014 (41)
	2015 - 2019 (8)
	2020 - 2024 (9)
	2025 - 2029 (1)

Enzyme Classification Name

	Hydrolases (27)
	Transferases (10)
	Translocases (1)

Membrane Protein Annotation

	MemProtMD (9)
	PDBTM (9)
	mpstruc (5)
	OPM (3)

Symmetry Type

	Asymmetric (73)
	Cyclic (48)
	Dihedral (2)

SCOP Classification

	Peptides (26)
	All beta proteins (12)
	Alpha and beta proteins (a/b) (5)
	Alpha and beta proteins (a+b) (5)
	All alpha proteins (1)
	Artifacts (1)
	Membrane and cell surface proteins and peptides (1)

AllSelected

1 to 25 of 127 Structures

Page 1 of 6

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173D \| pdb_0000173d	Download File View File

MULTIPLE BINDING MODES OF ANTICANCER DRUG ACTINOMYCIN D: X-RAY, MOLECULAR MODELING, AND SPECTROSCOPIC STUDIES OF D(GAAGCTTC)2-ACTINOMYCIN D COMPLEXES AND ITS HOST DNA

Kamitori, S., Takusagawa, F.

(1994) J Am Chem Soc 116: 4154

Released	1994-10-15
Method	X-RAY DIFFRACTION 3 Å
Organisms	Streptomyces antibioticus
Macromolecule	ACTINOMYCIN D (protein) DNA (5'-D(GPAPAPGPCPTPTPC)-3') (nucleic acid)

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1A7Y \| pdb_00001a7y	Download File View File

CRYSTAL STRUCTURE OF ACTINOMYCIN D

Schafer, M., Sheldrick, G.M., Bahner, I., Lackner, H.

(1998) Angew Chem Int Ed Engl 37: 2381-2384

Released	1999-03-23
Method	X-RAY DIFFRACTION 0.94 Å
Organisms	Streptomyces antibioticus
Macromolecule	ACTINOMYCIN D (protein)
Unique Ligands	EEE, MOH

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1A7Z \| pdb_00001a7z	Download File View File

CRYSTAL STRUCTURE OF ACTINOMYCIN Z3

Schafer, M.

(1998) Angew Chem Int Ed Engl 37: 2381-2384

Released	1999-03-23
Method	X-RAY DIFFRACTION 0.95 Å
Organisms	Streptomyces fradiae
Macromolecule	ACTINOMYCIN Z3 (protein)
Unique Ligands	BNZ

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1AL4 \| pdb_00001al4	Download File View File

GRAMICIDIN D FROM BACILLUS BREVIS (N-PROPANOL SOLVATE)

Burkhart, B.M., Gassman, R.M., Pangborn, W.A., Duax, W.L.

(1998) Biophys J 75: 2135

Released	1998-03-04
Method	X-RAY DIFFRACTION 1.13 Å
Organisms	Brevibacillus brevis
Macromolecule	GRAMICIDIN D (protein)
Unique Ligands	POL

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1ALX \| pdb_00001alx	Download File View File

GRAMICIDIN D FROM BACILLUS BREVIS (METHANOL SOLVATE)

Burkhart, B.M., Langs, D.A., Smith, G.D., Courseille, C., Precigoux, G., Hospital, M., Pangborn, W.A., Duax, W.L.

(1998) Biophys J 75: 2135

Released	1998-03-04
Method	X-RAY DIFFRACTION 1.2 Å
Organisms	Brevibacillus brevis
Macromolecule	GRAMICIDIN A (protein)
Unique Ligands	MOH

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1ALZ \| pdb_00001alz	Download File View File

GRAMICIDIN D FROM BACILLUS BREVIS (ETHANOL SOLVATE)

Burkhart, B.M., Pangborn, W.A., Duax, W.L., Langs, D.A.

(1998) Biophys J 75: 2135

Released	1998-03-04
Method	X-RAY DIFFRACTION 0.86 Å
Organisms	Brevibacillus brevis
Macromolecule	ILE-GRAMICIDIN C (protein) VAL-GRAMICIDIN A (protein)
Unique Ligands	EOH

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1AV2 \| pdb_00001av2	Download File View File

Gramicidin A/CsCl complex, active as a dimer

Burkhart, B.M., Li, N., Langs, D.A., Duax, W.L.

(1998) Proc Natl Acad Sci U S A 95: 12950

Released	1998-07-01
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Brevibacillus brevis
Macromolecule	GRAMICIDIN A (protein)
Unique Ligands	CL, CS, MOH

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1BDW \| pdb_00001bdw	Download File View File

GRAMICIDIN D FROM BACILLUS BREVIS (ACTIVE FORM)

Burkhart, B.M., Pangborn, W.A., Duax, W.L.

(1998) Proc Natl Acad Sci U S A 95: 12950

Released	1998-10-14
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Brevibacillus brevis
Macromolecule	GRAMICIDIN A (protein)
Unique Ligands	ACY

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1C4D \| pdb_00001c4d	Download File View File

GRAMICIDIN CSCL COMPLEX

Wallace, B.A.

(1988) Science 241: 182

Released	2000-01-03
Method	X-RAY DIFFRACTION 2 Å
Organisms	Brevibacillus brevis
Macromolecule	GRAMICIDIN A (protein)
Unique Ligands	CL, CS, MOH

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1DSC \| pdb_00001dsc	Download File View File

NMR STUDY OF DNA (5'-D(GPAPAPGPCPTPTPC)-3') SELF-COMPLEMENTARY DUPLEX COMPLEXED WITH ACTINOMYCIN D, MINIMIZED AVERAGE STRUCTURE

Lian, C., Robinson, H., Wang, A.H.-J.

(1996) J Am Chem Soc 118: 8791

Released	1996-12-07
Method	SOLUTION NMR
Organisms	Streptomyces antibioticus
Macromolecule	ACTINOMYCIN D (protein) DNA (5'-D(GPAPAPGPCPTPTPC)-3') (nucleic acid)

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1DSD \| pdb_00001dsd	Download File View File

NMR STUDY OF DNA (5'-D(GPAPTPGPCPTPTPC)-3') T:T MISMATCHED DUPLEX COMPLEXED WITH ACTINOMYCIN D, MINIMIZED AVERAGE STRUCTURE

Lian, C., Robinson, H., Wang, A.H.-J.

(1996) J Am Chem Soc 118: 8791

Released	1996-12-07
Method	SOLUTION NMR
Organisms	Streptomyces antibioticus
Macromolecule	ACTINOMYCIN D (protein) DNA (5'-D(GPAPTPGPCPTPTPC)-3') (nucleic acid)

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1EFR \| pdb_00001efr	Download File View File

BOVINE MITOCHONDRIAL F1-ATPASE COMPLEXED WITH THE PEPTIDE ANTIBIOTIC EFRAPEPTIN

Abrahams, J.P., Buchanan, S.K., Van Raaij, M.J., Fearnley, I.M., Leslie, A.G.W., Walker, J.E.

(1996) Proc Natl Acad Sci U S A 93: 9420

Released	1997-02-12
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Bos taurus Tolypocladium inflatum
Macromolecule	BOVINE MITOCHONDRIAL F1-ATPASE SUBUNIT ALPHA (protein) BOVINE MITOCHONDRIAL F1-ATPASE SUBUNIT BETA (protein) BOVINE MITOCHONDRIAL F1-ATPASE SUBUNIT GAMMA (protein) EFRAPEPTIN C (protein)
Unique Ligands	ADP, ANP, MG

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1FJA \| pdb_00001fja	Download File View File

NMR STUDY OF DEOXYRIBONUCLEIC ACID COMPLEXED WITH ACTINOMYCIN D

Chen, H., Liu, X., Patel, D.J.

(1996) J Mol Biology 258: 457

Released	1996-06-10
Method	SOLUTION NMR
Organisms	Streptomyces antibioticus
Macromolecule	ACTINOMYCIN D (protein) DNA (5'-D(APAPGPCPGPCPTPT)-3') (nucleic acid)

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1GMK \| pdb_00001gmk	Download File View File

GRAMICIDIN/KSCN COMPLEX

Doyle, D.A., Wallace, B.A.

(1997) J Mol Biology 266: 963

Released	1998-07-01
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Brevibacillus brevis
Macromolecule	GRAMICIDIN A (protein)
Unique Ligands	K, MOH, SCN

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1GRM \| pdb_00001grm	Download File View File

REFINEMENT OF THE SPATIAL STRUCTURE OF THE GRAMICIDIN A TRANSMEMBRANE ION-CHANNEL (RUSSIAN)

Arseniev, A.S., Barsukov, I.L., Lomize, A.L., Orekhov, V.Y., Bystrov, V.F.

(1992) Биологические мембраны Журнал мембранной и клеточной биологии 18: 182

Released	1994-01-31
Method	SOLUTION NMR
Organisms	Brevibacillus brevis
Macromolecule	GRAMICIDIN A (protein)

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1I3W \| pdb_00001i3w	Download File View File

ACTINOMYCIN D BINDING TO CGATCGATCG

Robinson, H., Gao, Y.-G., Yang, X.-L., Sanishvili, R., Joachimiak, A., Wang, A.H.-J.

(2001) Biochemistry 40: 5587

Released	2001-05-21
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Streptomyces antibioticus
Macromolecule	ACTINOMYCIN D (protein) 5'-D(CGPAPTPCPGPAP(BRU)PCPGP)-3' (nucleic acid)

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1JBL \| pdb_00001jbl	Download File View File

Solution structure of SFTI-1, A cyclic trypsin inhibitor from sunflower seeds

Korsinczky, M.L.J., Schirra, H.J., Rosengren, K.J., West, J., Condie, B.A., Otvos, L., Anderson, M.A., Craik, D.J.

(2001) J Mol Biology 311: 579-591

Released	2001-08-22
Method	SOLUTION NMR
Organisms	Helianthus annuus
Macromolecule	CYCLIC TRYPSIN INHIBITOR (protein)

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1JBN \| pdb_00001jbn	Download File View File

Solution structure of an acyclic permutant of SFTI-1, A trypsin inhibitor from sunflower seeds

Korsinczky, M.L.J., Schirra, H.J., Rosengren, K.J., West, J., Condie, B.A., Otvos, L., Anderson, M.A., Craik, D.J.

(2001) J Mol Biology 311: 579-591

Released	2001-08-22
Method	SOLUTION NMR
Organisms	Helianthus annuus
Macromolecule	CYCLIC TRYPSIN INHIBITOR (protein)

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1JNO \| pdb_00001jno	Download File View File

Gramicidin A in Sodium Dodecyl Sulfate Micelles (NMR)

Tucker, W.A., Sham, S., Townsley, L.E., Hinton, J.F.

(2001) Biochemistry 40: 11676

Released	2001-08-08
Method	SOLUTION NMR
Organisms	Brevibacillus brevis
Macromolecule	GRAMICIDIN A (protein)

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1JO3 \| pdb_00001jo3	Download File View File

Gramicidin B in Sodium Dodecyl Sulfate Micelles (NMR)

Townsley, L.E., Tucker, W.A., Hinton, J.F.

(2001) Biochemistry 40: 11676

Released	2001-08-08
Method	SOLUTION NMR
Organisms	Brevibacillus brevis
Macromolecule	GRAMICIDIN B (protein)

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1JO4 \| pdb_00001jo4	Download File View File

Gramicidin C in Sodium Dodecyl Sulfate Micelles (NMR)

Townsley, L.E., Tucker, W.A., Hinton, J.F.

(2001) Biochemistry 40: 11676

Released	2001-08-08
Method	SOLUTION NMR
Organisms	Brevibacillus brevis
Macromolecule	GRAMICIDIN C (protein)

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1KQE \| pdb_00001kqe	Download File View File

Solution structure of a linked shortened gramicidin A in benzene/acetone 10:1

Arndt, H.D., Bockelmann, D., Knoll, A., Lamberth, S., Griesinger, C., Koert, U.

(2002) Angew Chem Int Ed Engl 41: 4062

Released	2002-11-27
Method	SOLUTION NMR
Organisms	Brevibacillus brevis
Macromolecule	MINI-GRAMICIDIN A (protein)

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1L1V \| pdb_00001l1v	Download File View File

UNUSUAL ACTD/DNA_TA COMPLEX STRUCTURE

Chou, S.-H., Chin, K.-H., Chen, F.-M.

(2002) Proc Natl Acad Sci U S A 99: 6625

Released	2002-03-06
Method	SOLUTION NMR
Organisms	Streptomyces antibioticus
Macromolecule	ACTINOMYCIN D (protein) 5'-D(GPTPCPAPCPCPGPAP*C)-3' (nucleic acid)