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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: BIRD Class = "Metabolism"

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Search Summary

This query matches 528 Structures.

Refinements

Structure Determination Methodology

experimental (528)

Scientific Name of Source Organism

	Acetivibrio thermocellus (29)
	Homo sapiens (26)
	Panus similis (24)
	uncultured bacterium (14)
	Trichoderma reesei (13)
	Trichoderma reesei RUT C-30 (12)
	Bacteroides xylanisolvens XB1A (11)
	Leptoxyphium fumago (11)
	Thermotoga maritima (11)
	Phanerodontia chrysosporium (10)

More...

Taxonomy

	Bacteria (277)
	Eukaryota (235)
	Archaea (10)
	Riboviria (9)
	unclassified sequences (3)
	other sequences (1)

Experimental Method

	X-RAY DIFFRACTION (514)
	ELECTRON MICROSCOPY (12)
	NEUTRON DIFFRACTION (3)
	SOLUTION NMR (2)

Polymer Entity Type

Protein (528)

Refinement Resolution (Å)

	0.5 - 1.0 (6)
	1.0 - 1.5 (97)
	1.5 - 2.0 (238)
	2.0 - 2.5 (131)
	2.5 - 3.0 (41)
	3.0 - 3.5 (8)
	3.5 - 4.0 (3)
	> 4.5 (5)

Release Date

	1990 - 1994 (2)
	1995 - 1999 (22)
	2000 - 2004 (57)
	2005 - 2009 (77)
	2010 - 2014 (133)
	2015 - 2019 (133)
	2020 - 2024 (100)
	2025 - 2029 (4)

Enzyme Classification Name

	Hydrolases (301)
	Oxidoreductases (41)
	Transferases (13)
	Ligases (2)
	Lyases (2)
	Translocases (1)

Membrane Protein Annotation

	OPM (6)
	PDBTM (5)
	MemProtMD (3)
	mpstruc (2)

Symmetry Type

	Asymmetric (427)
	Cyclic (100)
	Dihedral (17)

SCOP Classification

	All beta proteins (158)
	Alpha and beta proteins (a/b) (125)
	All alpha proteins (38)
	Artifacts (34)
	Alpha and beta proteins (a+b) (12)
	Coiled coil proteins (5)
	Multi-domain proteins (alpha and beta) (1)

AllSelected

1 to 25 of 528 Structures

Page 1 of 22

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1B30 \| pdb_00001b30	Download File View File

XYLANASE FROM PENICILLIUM SIMPLICISSIMUM, COMPLEX WITH 1,2-(4-DEOXY-BETA-L-THREO-HEX-4-ENOPYRANOSYLURONIC ACID)-BETA-1,4-XYLOTRIOSE)

Schmidt, A., Kratky, C.

(1999) Biochemistry 38: 2403-2412

Released	1999-03-31
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Penicillium simplicissimum
Macromolecule	PROTEIN (XYLANASE) (protein)
Unique branched monosaccharides	XYP

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1B3X \| pdb_00001b3x	Download File View File

XYLANASE FROM PENICILLIUM SIMPLICISSIMUM, COMPLEX WITH XYLOTRIOSE

Schmidt, A., Kratky, C.

(1999) Biochemistry 38: 2403-2412

Released	1999-04-07
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Penicillium simplicissimum
Macromolecule	PROTEIN (XYLANASE) (protein)
Unique Ligands	XYP
Unique branched monosaccharides	XYP

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1B3Y \| pdb_00001b3y	Download File View File

XYLANASE FROM PENICILLIUM SIMPLICISSIMUM, COMPLEX WITH XYLOTETRAOSE

Schmidt, A., Kratky, C.

(1999) Biochemistry 38: 2403-2412

Released	1999-04-06
Method	X-RAY DIFFRACTION 2.45 Å
Organisms	Penicillium simplicissimum
Macromolecule	PROTEIN (XYLANASE) (protein)
Unique Ligands	XYS
Unique branched monosaccharides	XYP

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1B3Z \| pdb_00001b3z	Download File View File

XYLANASE FROM PENICILLIUM SIMPLICISSIMUM, COMPLEX WITH XYLOPENTAOSE

Schmidt, A., Kratky, C.

(1999) Biochemistry 38: 2403-2412

Released	1999-04-06
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Penicillium simplicissimum
Macromolecule	PROTEIN (XYLANASE) (protein)
Unique Ligands	XYP
Unique branched monosaccharides	XYP, XYS

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1BCX \| pdb_00001bcx	Download File View File

MUTATIONAL AND CRYSTALLOGRAPHIC ANALYSES OF THE ACTIVE SITE RESIDUES OF THE BACILLUS CIRCULANS XYLANASE

Campbell, R.L., Wakarchuk, W.W.

(1994) Protein Sci 3: 467-475

Released	1994-10-15
Method	X-RAY DIFFRACTION 1.81 Å
Organisms	Niallia circulans
Macromolecule	XYLANASE (protein)
Unique Ligands	SO4
Unique branched monosaccharides	XYP

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1BYH \| pdb_00001byh	Download File View File

MOLECULAR AND ACTIVE-SITE STRUCTURE OF A BACILLUS (1-3,1-4)-BETA-GLUCANASE

Keitel, T., Heinemann, U.

(1993) Proc Natl Acad Sci U S A 90: 5287-5291

Released	1993-10-31
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	synthetic construct
Macromolecule	HYBRID (protein)
Unique Ligands	CA, NBU
Unique branched monosaccharides	BGC

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1C3M \| pdb_00001c3m	Download File View File

CRYSTAL STRUCTURE OF HELTUBA COMPLEXED TO MAN(1-3)MAN

Bourne, Y., Zamboni, V., Barre, A., Peumans, W.J., van Damme, E.J.M., Rouge, P.

(1999) Structure 7: 1473-1482

Released	2000-01-10
Method	X-RAY DIFFRACTION 2 Å
Organisms	Helianthus tuberosus
Macromolecule	AGGLUTININ (protein)
Unique branched monosaccharides	MAN

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1C3N \| pdb_00001c3n	Download File View File

CRYSTAL STRUCTURE OF HELIANTHUS TUBEROSUS LECTIN COMPLEXED TO MAN(1-2)MAN

Bourne, Y., Zamboni, V., Barre, A., Peumans, W.J., van Damme, E.J.M., Rouge, P.

(1999) Structure 7: 1473-1482

Released	2000-01-10
Method	X-RAY DIFFRACTION 2.45 Å
Organisms	Helianthus tuberosus
Macromolecule	AGGLUTININ (protein)
Unique branched monosaccharides	MAN

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1CEN \| pdb_00001cen	Download File View File

CELLULASE (CELC) MUTANT WITH GLU 140 REPLACED BY GLN COMPLEXED WITH CELLOHEXAOSE

Dominguez, R., Alzari, P.M.

(1996) J Mol Biology 257: 1042-1051

Released	1996-04-03
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Acetivibrio thermocellus
Macromolecule	CELLULASE CELC (protein)
Unique branched monosaccharides	BGC

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1ECE \| pdb_00001ece	Download File View File

ACIDOTHERMUS CELLULOLYTICUS ENDOCELLULASE E1 CATALYTIC DOMAIN IN COMPLEX WITH A CELLOTETRAOSE

Sakon, J., Thomas, S.R., Himmel, M.E., Karplus, P.A.

(1996) Biochemistry 35: 10648-10660

Released	1996-10-14
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Acidothermus cellulolyticus
Macromolecule	ENDOCELLULASE E1 (protein)
Unique branched monosaccharides	BGC

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1G0C \| pdb_00001g0c	Download File View File

ALKALINE CELLULASE K CATALYTIC DOMAIN-CELLOBIOSE COMPLEX

Shirai, T., Ishida, H., Noda, J., Yamane, T., Ozaki, K., Hakamada, Y., Ito, S.

(2001) J Mol Biology 310: 1079-1087

Released	2001-08-01
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Bacillus sp. KSM-635
Macromolecule	ENDOGLUCANASE (protein)
Unique Ligands	ACY, CD
Unique branched monosaccharides	BGC

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1GA2 \| pdb_00001ga2	Download File View File

THE CRYSTAL STRUCTURE OF ENDOGLUCANASE 9G FROM CLOSTRIDIUM CELLULOLYTICUM COMPLEXED WITH CELLOBIOSE

Mandelman, D., Belaich, A., Belaich, J.P., Aghajari, N., Driguez, H., Haser, R.

(2003) J Bacteriol 185: 4127-4135

Released	2003-07-22
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Ruminiclostridium cellulolyticum
Macromolecule	ENDOGLUCANASE 9G (protein)
Unique Ligands	ACY, CA, GOL, MG
Unique branched monosaccharides	BGC

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1GOQ \| pdb_00001goq	Download File View File

Thermostable xylanase I from Thermoascus aurantiacus - Room temperature xylobiose complex

Lo Leggio, L., Larsen, S.

(2001) FEBS Lett 509: 303

Released	2001-12-07
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Thermoascus aurantiacus
Macromolecule	ENDO-1,4-BETA-XYLANASE (protein)
Unique Ligands	XYP
Unique branched monosaccharides	XYP

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1GQJ \| pdb_00001gqj	Download File View File

Structure of Pseudomonas cellulosa alpha-D-glucuronidase complexed with xylobiose

Nurizzo, D., Nagy, T., Gilbert, H.J., Davies, G.J.

(2002) Structure 10: 547

Released	2002-09-26
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Cellvibrio japonicus
Macromolecule	ALPHA-D-GLUCURONIDASE (protein)
Unique Ligands	CO, EDO
Unique branched monosaccharides	XYP

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1GU3 \| pdb_00001gu3	Download File View File

CBM4 structure and function

Nurizzo, D., Notenboom, V., Davies, G.J.

(2002) J Mol Biology 319: 1143

Released	2002-09-26
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Cellulomonas fimi
Macromolecule	ENDOGLUCANASE C (protein)
Unique branched monosaccharides	BGC

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1HF6 \| pdb_00001hf6	Download File View File

ENDOGLUCANASE CEL5A FROM BACILLUS AGARADHAERENS IN THE ORTHORHOMBIC CRYSTAL FORM IN COMPLEX WITH CELLOTRIOSE

Varrot, A., Withers, S., Vasella, A., Schulein, M., Davies, G.J.

(2003) Acta Crystallogr D Biol Crystallogr 59: 447

Released	2001-11-29
Method	X-RAY DIFFRACTION 1.15 Å
Organisms	Salipaludibacillus agaradhaerens
Macromolecule	ENDOGLUCANASE B (protein)
Unique Ligands	ACY, GOL, SO4
Unique branched monosaccharides	BGC, GLC

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1HFU \| pdb_00001hfu	Download File View File

TYPE-2 CU-DEPLETED LACCASE FROM COPRINUS CINEREUS at 1.68 A resolution

Ducros, V., Brzozowski, A.M.

(2001) Acta Crystallogr D Biol Crystallogr 57: 333

Released	2001-12-06
Method	X-RAY DIFFRACTION 1.68 Å
Organisms	Coprinopsis cinerea
Macromolecule	LACCASE 1 (protein)
Unique Ligands	CU
Unique branched monosaccharides	MAN, NAG

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1I3H \| pdb_00001i3h	Download File View File

CONCANAVALIN A-DIMANNOSE STRUCTURE

Sanders, D.A.R., Moothoo, D.N., Raftery, J., Howard, A.J., Helliwell, J.R., Naismith, J.H.

(2001) J Mol Biology 310: 875-884

Released	2001-07-25
Method	X-RAY DIFFRACTION 1.2 Å
Organisms	Canavalia ensiformis
Macromolecule	Concanavalin-A (protein)
Unique Ligands	CA, MN
Unique branched monosaccharides	MAN

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1I82 \| pdb_00001i82	Download File View File

FAMILY 9 CARBOHYDRATE-BINDING MODULE FROM THERMOTOGA MARITIMA XYLANASE 10A WITH CELLOBIOSE

Notenboom, V., Boraston, A.B., Warren, R.A.J., Kilburn, D.G., Rose, D.R.

(2001) Biochemistry 40: 6248-6256

Released	2001-06-13
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Thermotoga maritima
Macromolecule	ENDO-1,4-BETA-XYLANASE A (protein)
Unique Ligands	CA
Unique branched monosaccharides	BGC

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1IA7 \| pdb_00001ia7	Download File View File

CRYSTAL STRUCTURE OF THE CELLULASE CEL9M OF C. CELLULOLYTICIUM IN COMPLEX WITH CELLOBIOSE

Parsiegla, G., Belaich, A., Belaich, J.P., Haser, R.

(2002) Biochemistry 41: 11134-11142

Released	2002-10-30
Method	X-RAY DIFFRACTION 2 Å
Organisms	Ruminiclostridium cellulolyticum
Macromolecule	CELLULASE CEL9M (protein)
Unique Ligands	CA, EDO, NI, SO4, ZN
Unique branched monosaccharides	BGC

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1IIY \| pdb_00001iiy	Download File View File

Solution NMR Structure of Complex of 1:2 Cyanovirin-N:Man-Alpha1,2-Man-Alpha Restrained Regularized Mean Coordinates

Bewley, C.A.

(2001) Structure 9: 931-940

Released	2001-10-24
Method	SOLUTION NMR
Organisms	Nostoc ellipsosporum
Macromolecule	CYANOVIRIN-N (protein)
Unique branched monosaccharides	MAN

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1ISW \| pdb_00001isw	Download File View File

Crystal structure of xylanase from Streptomyces olivaceoviridis E-86 complexed with xylobiose

Fujimoto, Z., Kuno, A., Kaneko, S., Kobayashi, H., Kusakabe, I., Mizuno, H.

(2002) J Mol Biology 316: 65-78

Released	2002-02-20
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Streptomyces olivaceoviridis
Macromolecule	endo-1,4-beta-D-xylanase (protein)
Unique Ligands	XYP
Unique branched monosaccharides	XYP

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1ISX \| pdb_00001isx	Download File View File

Crystal structure of xylanase from Streptomyces olivaceoviridis E-86 complexed with xylotriose

Fujimoto, Z., Kuno, A., Kaneko, S., Kobayashi, H., Kusakabe, I., Mizuno, H.

(2002) J Mol Biology 316: 65-78

Released	2002-02-20
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Streptomyces olivaceoviridis
Macromolecule	endo-1,4-beta-D-xylanase (protein)
Unique Ligands	XYP
Unique branched monosaccharides	XYP

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1J84 \| pdb_00001j84	Download File View File

STRUCTURE OF FAM17 CARBOHYDRATE BINDING MODULE FROM CLOSTRIDIUM CELLULOVORANS WITH BOUND CELLOTETRAOSE

Notenboom, V., Boraston, A.B., Chiu, P., Freelove, A.C.J., Kilburn, D.G., Rose, D.R.

(2001) J Mol Biology 314: 797-806

Released	2001-12-12
Method	X-RAY DIFFRACTION 2.02 Å
Organisms	Clostridium cellulovorans
Macromolecule	endo-1,4-beta glucanase EngF (protein)
Unique Ligands	CA
Unique branched monosaccharides	BGC