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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Zhou, Y."

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Search Summary

This query matches 938 Structures.

Refinements

Structure Determination Methodology

experimental (938)

Scientific Name of Source Organism

	Homo sapiens (431)
	Severe acute respiratory syndrome coronavirus 2 (64)
	Mus musculus (49)
	Bos taurus (40)
	Ostrinia furnacalis (34)
	Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 (31)
	synthetic construct (26)
	Escherichia coli K-12 (22)
	Arabidopsis thaliana (19)
	Escherichia coli (19)

More...

Taxonomy

	Eukaryota (696)
	Bacteria (195)
	Riboviria (157)
	other sequences (26)
	Duplodnaviria (13)
	Eukaryota (eukaryotes) (5)
	Monodnaviria (4)
	Riboviria (RNA viruses and viroids) (2)
	Archaea (1)

Experimental Method

	X-RAY DIFFRACTION (653)
	ELECTRON MICROSCOPY (268)
	SOLUTION NMR (17)

Polymer Entity Type

	Protein (927)
	RNA (27)
	DNA (13)

Refinement Resolution (Å)

	1.0 - 1.5 (45)
	1.5 - 2.0 (201)
	2.0 - 2.5 (216)
	2.5 - 3.0 (155)
	3.0 - 3.5 (152)
	3.5 - 4.0 (101)
	4.0 - 4.5 (29)
	> 4.5 (22)

Release Date

	1995 - 1999 (2)
	2000 - 2004 (16)
	2005 - 2009 (47)
	2010 - 2014 (92)
	2015 - 2019 (217)
	2020 - 2024 (541)
	2025 - 2029 (23)

Enzyme Classification Name

	Hydrolases (191)
	Transferases (163)
	Oxidoreductases (33)
	Isomerases (18)
	Lyases (13)
	Ligases (12)
	Translocases (5)

Membrane Protein Annotation

	PDBTM (104)
	OPM (71)
	MemProtMD (67)
	mpstruc (55)

Symmetry Type

	Asymmetric (606)
	Cyclic (297)
	Dihedral (41)
	Icosahedral (3)
	Helical (1)

SCOP Classification

	All beta proteins (125)
	Alpha and beta proteins (a/b) (51)
	Artifacts (54)
	All alpha proteins (32)
	Alpha and beta proteins (a+b) (46)
	Multi-domain proteins (alpha and beta) (14)
	Membrane and cell surface proteins and peptides (13)
	Small proteins (2)

AllSelected

1 to 25 of 938 Structures

Page 1 of 38

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1B4W \| pdb_00001b4w	Download File View File

BASIC PHOSPHOLIPASE A2 FROM AGKISTRODON HALYS PALLAS-IMPLICATIONS FOR ITS ASSOCIATION AND ANTICOAGULANT ACTIVITIES BY X-RAY CRYSTALLOGRAPHY

Zhao, K.H., Lin, Z.J.

(2000) Toxicon 38: 901-916

Released	2000-01-12
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Gloydius halys
Macromolecule	PROTEIN (PHOSPHOLIPASE A2) (protein)
Unique Ligands	BOG

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1BK9 \| pdb_00001bk9	Download File View File

PHOSPHOLIPASE A2 MODIFIED BY PBPB

Zhao, H., Tang, L., Wang, X., Lin, Z., Zhou, Y.

(1998) Toxicon 36: 875-886

Released	1999-03-02
Method	X-RAY DIFFRACTION 2 Å
Organisms	Gloydius halys
Macromolecule	PHOSPHOLIPASE A2 (protein)
Unique Ligands	BU1, CA, PBP

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1BSJ \| pdb_00001bsj	Download File View File

COBALT DEFORMYLASE INHIBITOR COMPLEX FROM E.COLI

Hao, B., Gong, W., Rajagopalan, P.T., Hu, Y., Pei, D., Chan, M.K.

(1999) Biochemistry 38: 4712-4719

Released	2000-04-15
Method	X-RAY DIFFRACTION 3 Å
Organisms	Escherichia coli
Macromolecule	PROTEIN (PEPTIDE DEFORMYLASE) (protein)
Unique Ligands	CO, MLN, PO4

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1BSK \| pdb_00001bsk	Download File View File

ZINC DEFORMYLASE INHIBITOR COMPLEX FROM E.COLI

Hao, B., Gong, W., Rajagopalan, P.T., Hu, Y., Pei, D., Chan, M.K.

(1999) Biochemistry 38: 4712-4719

Released	2000-04-15
Method	X-RAY DIFFRACTION 3 Å
Organisms	Escherichia coli
Macromolecule	PROTEIN (PEPTIDE DEFORMYLASE) (protein)
Unique Ligands	MLN, PO4, ZN

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1C1J \| pdb_00001c1j	Download File View File

STRUCTURE OF CADMIUM-SUBSTITUTED PHOSPHOLIPASE A2 FROM AGKISTRONDON HALYS PALLAS AT 2.8 ANGSTROMS RESOLUTION

Zhang, H.-l., Zhang, Y.-q., Song, S.-y., Zhou, Y., Lin, Z.-j.

(1999) Protein Pept Lett 6: 185-193

Released	2002-07-05
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Gloydius halys
Macromolecule	BASIC PHOSPHOLIPASE A2 (protein)
Unique Ligands	BOG, CD

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1GH2 \| pdb_00001gh2	Download File View File

Crystal structure of the catalytic domain of a new human thioredoxin-like protein

Jin, J., Chen, X., Guo, Q., Yuan, J., Qiang, B., Rao, Z.

(2002) Eur J Biochem 269: 2060-2068

Released	2001-05-01
Method	X-RAY DIFFRACTION 2.22 Å
Organisms	Homo sapiens
Macromolecule	THIOREDOXIN-LIKE PROTEIN (protein)

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1IJL \| pdb_00001ijl	Download File View File

Crystal structure of acidic phospholipase A2 from deinagkistrodon acutus

Gu, L., Zhang, H., Song, S., Zhou, Y., Lin, Z.

(2002) Acta Crystallogr D Biol Crystallogr 58: 104-110

Released	2001-12-28
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Deinagkistrodon acutus
Macromolecule	PHOSPHOLIPASE A2 (protein)
Unique Ligands	CA, ZN

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1JIA \| pdb_00001jia	Download File View File

STRUCTURE OF A BASIC PHOSPHOLIPASE A2 FROM AGKISTRODON HALYS PALLAS AT 2.13A RESOLUTION

Zhao, K., Lin, Z.

(1998) Acta Crystallogr D Biol Crystallogr 54: 510-521

Released	1998-06-10
Method	X-RAY DIFFRACTION 2.13 Å
Organisms	Gloydius halys
Macromolecule	PHOSPHOLIPASE A2 (protein)
Unique Ligands	CA

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1JVM \| pdb_00001jvm	Download File View File

KCSA POTASSIUM CHANNEL WITH TBA (TETRABUTYLAMMONIUM) AND RUBIDIUM

Morais-Cabral, J.H., Zhou, Y., MacKinnon, R.

(2001) Nature 414: 37-42

Released	2001-12-05
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Streptomyces lividans
Macromolecule	Voltage-gated potassium channel (protein)
Unique Ligands	RB, TBA

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1K4C \| pdb_00001k4c	Download File View File

Potassium Channel KcsA-Fab complex in high concentration of K+

Zhou, Y., Morais-Cabral, J.H., Kaufman, A., MacKinnon, R.

(2001) Nature 414: 43-48

Released	2001-11-14
Method	X-RAY DIFFRACTION 2 Å
Organisms	Mus musculus Streptomyces lividans
Macromolecule	antibody Fab fragment heavy chain (protein) antibody Fab fragment light chain (protein) potassium channel KcsA (protein)
Unique Ligands	DGA, F09, K

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1K4D \| pdb_00001k4d	Download File View File

Potassium Channel KcsA-Fab complex in low concentration of K+

Zhou, Y., Morais-Cabral, J.H., Kaufman, A., MacKinnon, R.

(2001) Nature 414: 43-48

Released	2001-11-14
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Mus musculus Streptomyces lividans
Macromolecule	antibody Fab fragment heavy chain (protein) antibody Fab fragment light chain (protein) potassium channel KcsA (protein)
Unique Ligands	DGA, F09, K, NA

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1KGS \| pdb_00001kgs	Download File View File

Crystal Structure at 1.50 A of an OmpR/PhoB Homolog from Thermotoga maritima

Buckler, D.R., Zhou, Y., Stock, A.M.

(2002) Structure 10: 153-164

Released	2001-12-05
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Thermotoga maritima
Macromolecule	DNA BINDING RESPONSE REGULATOR D (protein)
Unique Ligands	SCN

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1M8R \| pdb_00001m8r	Download File View File

Crystal Structures of Cadmium-binding Acidic Phospholipase A2 from the Venom of Agkistrodon halys pallas at 1.9 Resolution (crystal grown at pH 7.4)

Xu, S., Gu, L., Zhou, Y., Lin, Z.

(2003) Biochem Biophys Res Commun 300: 271-277

Released	2003-02-11
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Gloydius halys
Macromolecule	phospholipase A2 (protein)
Unique Ligands	BU1, CD

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1M8S \| pdb_00001m8s	Download File View File

Crystal Structures of Cadmium-binding Acidic Phospholipase A2 from the Venom of Agkistrodon halys pallas at 1.9 Resolution (crystal grown at pH 5.9)

Xu, S., Gu, L., Zhou, Y., Lin, Z.

(2003) Biochem Biophys Res Commun 300: 271-277

Released	2003-02-11
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Gloydius halys
Macromolecule	phospholipase a2 (protein)
Unique Ligands	BU1, CD

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1R3I \| pdb_00001r3i	Download File View File

potassium channel KcsA-Fab complex in Rb+

Zhou, Y., MacKinnon, R.

(2003) J Mol Biology 333: 965-975

Released	2003-11-25
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Mus musculus Streptomyces lividans
Macromolecule	Antibody Fab fragment heavy chain (protein) Antibody Fab fragment light chain (protein) Voltage-gated potassium channel (protein)
Unique Ligands	DGA, F09, RB

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1R3J \| pdb_00001r3j	Download File View File

potassium channel KcsA-Fab complex in high concentration of Tl+

Zhou, Y., MacKinnon, R.

(2003) J Mol Biology 333: 965-975

Released	2003-11-25
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Mus musculus Streptomyces lividans
Macromolecule	Antibody Fab fragment heavy chain (protein) Antibody Fab fragment light chain (protein) Voltage-gated potassium channel (protein)
Unique Ligands	DGA, F09, TL

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1R3K \| pdb_00001r3k	Download File View File

potassium channel KcsA-Fab complex in low concentration of Tl+

Zhou, Y., MacKinnon, R.

(2003) J Mol Biology 333: 965-975

Released	2003-11-25
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Mus musculus Streptomyces lividans
Macromolecule	Antibody Fab fragment heavy chain (protein) Antibody Fab fragment light chain (protein) Voltage-gated potassium channel (protein)
Unique Ligands	DGA, TL

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1R3L \| pdb_00001r3l	Download File View File

potassium channel KcsA-Fab complex in Cs+

Zhou, Y., MacKinnon, R.

(2003) J Mol Biology 333: 965-975

Released	2003-11-25
Method	X-RAY DIFFRACTION 2.41 Å
Organisms	Mus musculus Streptomyces lividans
Macromolecule	Antibody Fab fragment heavy chain (protein) Antibody Fab fragment light chain (protein) Voltage-gated potassium channel (protein)
Unique Ligands	CS, DGA, F09

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2AY0 \| pdb_00002ay0	Download File View File

Structure of the Lys9Met mutant of the E. coli Proline Utilization A (PutA) DNA-binding domain.

Larson, J.D., Schuermann, J.P., Zhou, Y., Jenkins, J.L., Becker, D.F., Tanner, J.J.

(2006) Protein Sci 15: 2630-2641

Released	2006-08-15
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Escherichia coli
Macromolecule	Bifunctional putA protein (protein)
Unique Ligands	CL

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2DGN \| pdb_00002dgn	Download File View File

Mouse Muscle Adenylosuccinate Synthetase partially ligated complex with GTP, 2'-deoxy-IMP

Iancu, C.V., Zhou, Y., Borza, T., Fromm, H.J., Honzatko, R.B.

(2006) Biochemistry 45: 11703-11711

Released	2006-09-15
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Mus musculus
Macromolecule	Adenylosuccinate synthetase isozyme 1 (protein)
Unique Ligands	DOI, GDP, MG

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2DI3 \| pdb_00002di3	Download File View File

Crystal structure of the transcriptional factor CGL2915 from Corynebacterium glutamicum

Gao, Y.G., Yao, M., Tanaka, I.

(2008) Nucleic Acids Res 36: 7110-7123

Released	2007-03-28
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Corynebacterium glutamicum
Macromolecule	Bacterial regulatory proteins, GntR family (protein)
Unique Ligands	ZN

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2DU9 \| pdb_00002du9	Download File View File

crystal structure of the transcriptional factor from C.glutamicum

Gao, Y., Yao, M., Tanaka, I.

(2007) Protein Sci 16: 1878-1886

Released	2007-07-24
Method	X-RAY DIFFRACTION 2.28 Å
Organisms	Corynebacterium glutamicum ATCC 13032
Macromolecule	Predicted transcriptional regulators (protein)
Unique Ligands	MPD

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2DWD \| pdb_00002dwd	Download File View File

crystal structure of KcsA-FAB-TBA complex in Tl+

Yohannan, S., Zhou, Y.

(2007) J Mol Biology 366: 806-814

Released	2007-02-20
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Mus musculus Streptomyces lividans
Macromolecule	ANTIBODY FAB HEAVY CHAIN (protein) ANTIBODY FAB LIGHT CHAIN (protein) Voltage-gated potassium channel (protein)
Unique Ligands	F09, L2C, TBA, TL

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2DWE \| pdb_00002dwe	Download File View File

Crystal structure of KcsA-FAB-TBA complex in Rb+

Yohannan, S., Zhou, Y.

(2007) J Mol Biology 366: 806-814

Released	2007-02-20
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Mus musculus Streptomyces lividans
Macromolecule	ANTIBODY FAB HEAVY CHAIN (protein) ANTIBODY FAB LIGHT CHAIN (protein) Voltage-gated potassium channel (protein)
Unique Ligands	F09, L2C, RB, TBA

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2EK5 \| pdb_00002ek5	Download File View File

Crystal structure of the transcriptional factor from C.glutamicum at 2.2 angstrom resolution

Gao, Y.G., Yao, M., Tanaka, I.

(2007) Protein Sci 16: 1878-1886

Released	2007-09-18
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Corynebacterium glutamicum ATCC 13032
Macromolecule	Predicted transcriptional regulators (protein)

1 to 25 of 938 Structures

Page 1 of 38

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1B4W | pdb_00001b4w

1BK9 | pdb_00001bk9

1BSJ | pdb_00001bsj

1BSK | pdb_00001bsk

1C1J | pdb_00001c1j

1GH2 | pdb_00001gh2

1IJL | pdb_00001ijl

1JIA | pdb_00001jia

1JVM | pdb_00001jvm

1K4C | pdb_00001k4c

1K4D | pdb_00001k4d

1KGS | pdb_00001kgs

1M8R | pdb_00001m8r

1M8S | pdb_00001m8s

1R3I | pdb_00001r3i

1R3J | pdb_00001r3j

1R3K | pdb_00001r3k

1R3L | pdb_00001r3l

2AY0 | pdb_00002ay0

2DGN | pdb_00002dgn

2DI3 | pdb_00002di3

2DU9 | pdb_00002du9

2DWD | pdb_00002dwd

2DWE | pdb_00002dwe

2EK5 | pdb_00002ek5