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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Zhang, W."

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Search Summary

This query matches 1,108 Structures.

Refinements

Structure Determination Methodology

experimental (1,108)

Scientific Name of Source Organism

	Homo sapiens (383)
	synthetic construct (113)
	Mus musculus (51)
	Severe acute respiratory syndrome coronavirus 2 (46)
	Escherichia coli (36)
	Influenza A virus (26)
	Arabidopsis thaliana (24)
	Pseudomonas aeruginosa PAO1 (22)
	Saccharomyces cerevisiae S288C (22)
	Escherichia coli K-12 (19)

More...

Taxonomy

	Eukaryota (565)
	Bacteria (303)
	Riboviria (195)
	other sequences (114)
	Archaea (20)
	Duplodnaviria (14)
	Varidnaviria (12)
	Monodnaviria (2)
	Eukaryota (eukaryotes) (1)
	unclassified viruses (1)

Experimental Method

	X-RAY DIFFRACTION (808)
	ELECTRON MICROSCOPY (261)
	SOLUTION NMR (39)

Polymer Entity Type

	Protein (1,034)
	RNA (79)
	DNA (71)

Refinement Resolution (Å)

	0.5 - 1.0 (2)
	1.0 - 1.5 (67)
	1.5 - 2.0 (240)
	2.0 - 2.5 (234)
	2.5 - 3.0 (259)
	3.0 - 3.5 (159)
	3.5 - 4.0 (57)
	4.0 - 4.5 (15)
	> 4.5 (36)

Release Date

	1990 - 1994 (2)
	1995 - 1999 (12)
	2000 - 2004 (37)
	2005 - 2009 (58)
	2010 - 2014 (189)
	2015 - 2019 (283)
	2020 - 2024 (489)
	2025 - 2029 (38)

Enzyme Classification Name

	Transferases (196)
	Hydrolases (201)
	Oxidoreductases (83)
	Lyases (22)
	Ligases (20)
	Isomerases (18)
	Translocases (3)

Membrane Protein Annotation

	PDBTM (91)
	mpstruc (80)
	MemProtMD (50)
	OPM (37)

Symmetry Type

	Asymmetric (632)
	Cyclic (352)
	Dihedral (52)
	Icosahedral (16)
	Helical (6)
	Octahedral (1)
	Tetrahedral (1)

SCOP Classification

	All beta proteins (111)
	Alpha and beta proteins (a+b) (106)
	Alpha and beta proteins (a/b) (71)
	Coiled coil proteins (63)
	Artifacts (52)
	All alpha proteins (53)
	Multi-domain proteins (alpha and beta) (20)
	Low resolution protein structures (6)
	Membrane and cell surface proteins and peptides (13)
	Small proteins (8)

AllSelected

1 to 25 of 1,108 Structures

Page 1 of 45

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1BQM \| pdb_00001bqm	Download File View File

HIV-1 RT/HBY 097

Hsiou, Y., Das, K., Ding, J., Arnold, E.

(1998) J Mol Biology 284: 313-323

Released	1999-01-06
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Human immunodeficiency virus 1
Macromolecule	REVERSE TRANSCRIPTASE (protein)
Unique Ligands	HBY

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1BQN \| pdb_00001bqn	Download File View File

TYR 188 LEU HIV-1 RT/HBY 097

Hsiou, Y., Das, K., Ding, J., Arnold, E.

(1998) J Mol Biology 284: 313-323

Released	1999-01-06
Method	X-RAY DIFFRACTION 3.3 Å
Organisms	Human immunodeficiency virus 1
Macromolecule	REVERSE TRANSCRIPTASE (protein)
Unique Ligands	HBY

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1DLO \| pdb_00001dlo	Download File View File

HUMAN IMMUNODEFICIENCY VIRUS TYPE 1

Hsiou, Y., Ding, J., Das, K., Hughes, S., Arnold, E.

(1996) Structure 4: 853-860

Released	1996-08-01
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Human immunodeficiency virus 1
Macromolecule	HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 REVERSE TRANSCRIPTASE (protein)

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1FEZ \| pdb_00001fez	Download File View File

THE CRYSTAL STRUCTURE OF BACILLUS CEREUS PHOSPHONOACETALDEHYDE HYDROLASE COMPLEXED WITH TUNGSTATE, A PRODUCT ANALOG

Morais, M.C., Zhang, W., Baker, A.S., Zhang, G., Dunaway-Mariano, D., Allen, K.N.

(2000) Biochemistry 39: 10385-10396

Released	2000-10-04
Method	X-RAY DIFFRACTION 3 Å
Organisms	Bacillus cereus
Macromolecule	PHOSPHONOACETALDEHYDE HYDROLASE (protein)
Unique Ligands	MG, WO4

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1FSH \| pdb_00001fsh	Download File View File

STRUCTURAL BASIS OF THE RECOGNITION OF THE DISHEVELLED DEP DOMAIN IN THE WNT SIGNALING PATHWAY

Wong, H.C., Zheng, J.

(2000) Nat Struct Biol 7: 1178-1184

Released	2001-03-08
Method	SOLUTION NMR
Organisms	Mus musculus
Macromolecule	DISHEVELLED-1 (protein)

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1HNI \| pdb_00001hni	Download File View File

STRUCTURE OF HIV-1 REVERSE TRANSCRIPTASE IN A COMPLEX WITH THE NONNUCLEOSIDE INHIBITOR ALPHA-APA R 95845 AT 2.8 ANGSTROMS RESOLUTION

Ding, J., Das, K., Arnold, E.

(1995) Structure 3: 365-379

Released	1995-06-03
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Human immunodeficiency virus 1
Macromolecule	HIV-1 REVERSE TRANSCRIPTASE (SUBUNIT P51) (protein) HIV-1 REVERSE TRANSCRIPTASE (SUBUNIT P66) (protein)
Unique Ligands	AAA

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1HNV \| pdb_00001hnv	Download File View File

STRUCTURE OF HIV-1 RT(SLASH)TIBO R 86183 COMPLEX REVEALS SIMILARITY IN THE BINDING OF DIVERSE NONNUCLEOSIDE INHIBITORS

Das, K., Ding, J., Arnold, E.

(1995) Nat Struct Biol 2: 407-415

Released	1995-07-10
Method	X-RAY DIFFRACTION 3 Å
Organisms	Human immunodeficiency virus 1
Macromolecule	HIV-1 REVERSE TRANSCRIPTASE (SUBUNIT P51) (protein) HIV-1 REVERSE TRANSCRIPTASE (SUBUNIT P66) (protein)
Unique Ligands	TBO

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1HOC \| pdb_00001hoc	Download File View File

THE THREE-DIMENSIONAL STRUCTURE OF H-2DB AT 2.4 ANGSTROMS RESOLUTION: IMPLICATIONS FOR ANTIGEN-DETERMINANT SELECTION

Young, A.C.M., Zhang, W., Sacchettini, J.C.

(1994) Cell 76: 39-50

Released	1994-04-30
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Influenza A virus (A/swine/Hong Kong/126/1982(H3N2)) Mus musculus
Macromolecule	9-RESIDUE PEPTIDE (protein) BETA 2-MICROGLOBULIN (protein) CLASS I HISTOCOMPATIBILITY ANTIGEN (H2-DB) (ALPHA CHAIN) (protein)

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1HPZ \| pdb_00001hpz	Download File View File

HUMAN IMMUNODEFICIENCY VIRUS TYPE 1

Ding, J., Hsiou, Y., Arnold, E.

(2001) J Mol Biology 309: 437-445

Released	2001-05-30
Method	X-RAY DIFFRACTION 3 Å
Organisms	Human immunodeficiency virus 1
Macromolecule	POL POLYPROTEIN (protein)
Unique Ligands	AAP

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1I1S \| pdb_00001i1s	Download File View File

SOLUTION STRUCTURE OF THE TRANSCRIPTIONAL ACTIVATION DOMAIN OF THE BACTERIOPHAGE T4 PROTEIN MOTA

Li, N., Zhang, W., White, S.W., Kriwacki, R.W.

(2001) Biochemistry 40: 4293-4302

Released	2001-02-14
Method	SOLUTION NMR
Organisms	Tequatrovirus T4
Macromolecule	MOTA (protein)

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1JW8 \| pdb_00001jw8	Download File View File

1.3 ANGSTROM RESOLUTION CRYSTAL STRUCTURE OF P6 FORM OF MYOGLOBIN

Phillips Jr., G.N.

(2008) Proteins 70: 353-362

Released	2001-10-10
Method	X-RAY DIFFRACTION 1.3 Å
Organisms	Physeter macrocephalus
Macromolecule	MYOGLOBIN (protein)
Unique Ligands	CMO, HEM, SO4

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1JXZ \| pdb_00001jxz	Download File View File

Structure of the H90Q mutant of 4-Chlorobenzoyl-Coenzyme A Dehalogenase complexed with 4-hydroxybenzoyl-Coenzyme A (product)

Thoden, J.B., Zhang, W., Wei, Y., Luo, L., Taylor, K.L., Yang, G., Dunaway-Mariano, D., Benning, M.M., Holden, H.M.

(2001) Biochemistry 40: 13474-13482

Released	2001-10-03
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Pseudomonas sp. CBS3
Macromolecule	4-chlorobenzoyl Coenzyme A dehalogenase (protein)
Unique Ligands	BCA, CA, PO4

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1K4R \| pdb_00001k4r	Download File View File

Structure of Dengue Virus

Kuhn, R.J., Zhang, W., Rossmann, M.G., Pletnev, S.V., Corver, J., Lenches, E., Jones, C.T., Mukhopadhyay, S., Chipman, P.R., Strauss, E.G., Baker, T.S., Strauss, J.H.

(2002) Cell 108: 717-725

Released	2002-03-13
Method	ELECTRON MICROSCOPY 24 Å
Organisms	Chimeric Tick-borne encephalitis virus/Dengue virus 4
Macromolecule	MAJOR ENVELOPE PROTEIN E (protein)

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1KD6 \| pdb_00001kd6	Download File View File

Solution structure of the eukaryotic pore-forming cytolysin equinatoxin II

Hinds, M.G., Zhang, W., Anderluh, G., Hansen, P.E., Norton, R.S.

(2002) J Mol Biology 315: 1219-1229

Released	2002-02-13
Method	SOLUTION NMR
Organisms	Actinia equina
Macromolecule	EQUINATOXIN II (protein)

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1LD4 \| pdb_00001ld4	Download File View File

Placement of the Structural Proteins in Sindbis Virus

Zhang, W., Mukhopadhyay, S., Pletnev, S.V., Baker, T.S., Kuhn, R.J., Rossmann, M.G.

(2002) J Virol 76: 11645-11658

Released	2002-11-04
Method	ELECTRON MICROSCOPY 11.4 Å
Organisms	Saccharomyces cerevisiae Sindbis virus
Macromolecule	Coat protein C (protein) GENERAL CONTROL PROTEIN GCN4 (protein) Spike glycoprotein E1 (protein)
Unique Ligands	UNX

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1LFK \| pdb_00001lfk	Download File View File

Crystal structure of OxyB, a Cytochrome P450 Implicated in an Oxidative Phenol Coupling Reaction During Vancomycin Biosynthesis

Pylypenko, O., Zerbe, K., Vitali, F., Zhang, W., Vrijbloed, J.W., Robinson, J.A., Schlichting, I.

(2002) J Biological Chem 277: 47476-47485

Released	2002-12-11
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Amycolatopsis orientalis
Macromolecule	P450 monooxygenase (protein)
Unique Ligands	HEM

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1LG9 \| pdb_00001lg9	Download File View File

Crystal structure of OxyB, a Cytochrome P450 Implicated in an Oxidative Phenol Coupling Reaction During Vancomycin Biosynthesis

Pylypenko, O., Zerbe, K., Vitali, F., Zhang, W., Vrijbloed, J.W., Robinson, J.A., Schlichting, I.

(2002) J Biological Chem 277: 47476-47485

Released	2002-12-11
Method	X-RAY DIFFRACTION 2 Å
Organisms	Amycolatopsis orientalis
Macromolecule	P450 monooxygenase (protein)
Unique Ligands	HEM

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1LGF \| pdb_00001lgf	Download File View File

Crystal structure of OxyB, a Cytochrome P450 Implicated in an Oxidative Phenol Coupling Reaction During Vancomycin Biosynthesis

Pylypenko, O., Zerbe, K., Vitali, F., Zhang, W., Vrijbloed, J.W., Robinson, J.A., Schlichting, I.

(2002) J Biological Chem 277: 47476-47485

Released	2002-12-11
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Amycolatopsis orientalis
Macromolecule	P450 monooxygenase (protein)
Unique Ligands	HEM

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1N14 \| pdb_00001n14	Download File View File

Structure and Dynamics of Thioguanine-modified Duplex DNA in Comparison with Unmodified DNA; Structure of Unmodified Duplex DNA

Somerville, L., Krynetski, E.Y., Krynetskaia, N.F., Beger, R.D., Zhang, W., Marhefka, C.A., Evans, W.E., Kriwacki, R.W.

(2003) J Biological Chem 278: 1005-1011

Released	2002-10-23
Method	SOLUTION NMR
Macromolecule	5'-D(GPCPTPAPAPGPGPAPAPAPGPCPC)-3' (nucleic acid) 5'-D(GPGPCPTPTPTPCPCPTPTPAPGPC)-3' (nucleic acid)

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1N17 \| pdb_00001n17	Download File View File

Structure and Dynamics of Thioguanine-modified Duplex DNA

Somerville, L., Krynetski, E.Y., Krynetskaia, N.F., Beger, R.D., Zhang, W., Marhefka, C.A., Evans, W.E., Kriwacki, R.W.

(2003) J Biological Chem 278: 1005-1011

Released	2002-10-23
Method	SOLUTION NMR
Macromolecule	5'-D(GPCPTPAPAPGP(S6G)PAPAPAPGPCPC)-3' (nucleic acid) 5'-D(GPGPCPTPTPTPCPCPTPTPAPGPC)-3' (nucleic acid)

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1N6G \| pdb_00001n6g	Download File View File

The structure of immature Dengue-2 prM particles

Zhang, Y., Corver, J., Chipman, P.R., Zhang, W., Pletnev, S.V., Sedlak, D., Baker, T.S., Strauss, J.H., Kuhn, R.J., Rossmann, M.G.

(2003) EMBO J 22: 2604-2613

Released	2003-06-03
Method	ELECTRON MICROSCOPY 16 Å
Organisms	Dengue virus 2 Puerto Rico/PR159-S1/1969
Macromolecule	major envelope protein E (protein)

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1NA4 \| pdb_00001na4	Download File View File

The structure of immature Yellow Fever virus particle

Zhang, Y., Corver, J., Chipman, P.R., Lenches, E., Zhang, W., Pletnev, S.V., Sedlak, D., Baker, T.S., Strauss, J.H., Kuhn, R.J., Rossmann, M.G.

(2003) EMBO J 22: 2604-2613

Released	2003-12-09
Method	ELECTRON MICROSCOPY 25 Å
Organisms	Yellow fever virus
Macromolecule	major envelope protein E (protein)

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1OR4 \| pdb_00001or4	Download File View File

Crystal Structure of HemAT sensor domain from B.subtilis in the cyano-liganded form

Zhang, W., Phillips Jr., G.N.

(2003) Structure 11: 1097-1110

Released	2003-09-23
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Bacillus subtilis
Macromolecule	Heme-based aerotactic transducer hemAT (protein)
Unique Ligands	CYN, HEM

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1OR6 \| pdb_00001or6	Download File View File

Crystal Structure of HemAT sensor domain from B.subtilis in the unliganded form

Zhang, W., Phillips Jr., G.N.

(2003) Structure 11: 1097-1110

Released	2003-09-23
Method	X-RAY DIFFRACTION 2.71 Å
Organisms	Bacillus subtilis
Macromolecule	Heme-based aerotactic transducer hemAT (protein)
Unique Ligands	HEM

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1P58 \| pdb_00001p58	Download File View File

Complex Organization of Dengue Virus Membrane Proteins as Revealed by 9.5 Angstrom Cryo-EM reconstruction

Zhang, W., Chipman, P.R., Corver, J., Johnson, P.R., Zhang, Y., Mukhopadhyay, S., Baker, T.S., Strauss, J.H., Rossmann, M.G., Kuhn, R.J.

(2003) Nat Struct Biol 10: 907-912

Released	2003-11-04
Method	ELECTRON MICROSCOPY 9.5 Å
Organisms	Dengue virus 2 Puerto Rico/PR159-S1/1969
Macromolecule	Envelope protein M (protein) Major envelope protein E (protein)

1 to 25 of 1,108 Structures

Page 1 of 45

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1BQM | pdb_00001bqm

1BQN | pdb_00001bqn

1DLO | pdb_00001dlo

1FEZ | pdb_00001fez

1FSH | pdb_00001fsh

1HNI | pdb_00001hni

1HNV | pdb_00001hnv

1HOC | pdb_00001hoc

1HPZ | pdb_00001hpz

1I1S | pdb_00001i1s

1JW8 | pdb_00001jw8

1JXZ | pdb_00001jxz

1K4R | pdb_00001k4r

1KD6 | pdb_00001kd6

1LD4 | pdb_00001ld4

1LFK | pdb_00001lfk

1LG9 | pdb_00001lg9

1LGF | pdb_00001lgf

1N14 | pdb_00001n14

1N17 | pdb_00001n17

1N6G | pdb_00001n6g

1NA4 | pdb_00001na4

1OR4 | pdb_00001or4

1OR6 | pdb_00001or6

1P58 | pdb_00001p58